mRNA_H-canaliculatus_F_contig10134.160.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10134.160.1
Unique NamemRNA_H-canaliculatus_F_contig10134.160.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10134.160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10134contigH-canaliculatus_F_contig10134:4360..5149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size790
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10134.160.1prot_H-canaliculatus_F_contig10134.160.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10134 4556..4984 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928642.809965-UTR-H-canaliculatus_F_contig10134:4359..45551622928642.809965-UTR-H-canaliculatus_F_contig10134:4359..4555Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10134 4360..4555 +
1696845509.5776565-UTR-H-canaliculatus_F_contig10134:4359..45551696845509.5776565-UTR-H-canaliculatus_F_contig10134:4359..4555Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10134 4360..4555 +
1622928642.8399246-UTR-H-canaliculatus_F_contig10134:4984..51491622928642.8399246-UTR-H-canaliculatus_F_contig10134:4984..5149Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10134 4985..5149 +
1696845509.60421-UTR-H-canaliculatus_F_contig10134:4984..51491696845509.60421-UTR-H-canaliculatus_F_contig10134:4984..5149Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10134 4985..5149 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928642.823922-CDS-H-canaliculatus_F_contig10134:4555..49841622928642.823922-CDS-H-canaliculatus_F_contig10134:4555..4984Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10134 4556..4984 +
1696845509.5948474-CDS-H-canaliculatus_F_contig10134:4555..49841696845509.5948474-CDS-H-canaliculatus_F_contig10134:4555..4984Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10134 4556..4984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10134.160.1

>prot_H-canaliculatus_F_contig10134.160.1 ID=prot_H-canaliculatus_F_contig10134.160.1|Name=mRNA_H-canaliculatus_F_contig10134.160.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=143bp
MKGKHKGGHDRFRHHHRHHRGAHIVNGCLKGHVVDVAFWPRVGSFGPCSP
EEYIVQFLPNLDGSGSSVRTSSAVELPPYSKNSSKEPGLCSVIFPSMFYR
RTRRSRRFTGKLSCYRLPPRAVPPKNEIPSTVRTTIVVLATV*
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mRNA from alignment at H-canaliculatus_F_contig10134:4360..5149+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10134.160.1 ID=mRNA_H-canaliculatus_F_contig10134.160.1|Name=mRNA_H-canaliculatus_F_contig10134.160.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=790bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10134:4360..5149+ (Hapterophycus canaliculatus Oshoro5f female)
CTTGCTTTCGGTAGACGGGGGCGTGGGACTAATCATGCAGCAGTAGCACA
AGTTTCAAGCACCTTTAATGCACCCCCGTATGGTCTGCACAGCCCAGCGG
ATTTATTCGTGCACACCCGTCGGACCAGAGTAAGACTACCGTTCAAAGAG
ACCATATTACATCAACACTTTCGCCAAATGGGCCCACGTTTGAGGAATGA
AGGGCAAGCACAAGGGGGGACATGATCGATTTCGACACCATCATCGACAC
CATCGTGGGGCGCACATCGTGAATGGTTGTTTGAAGGGGCACGTGGTAGA
CGTCGCCTTTTGGCCGCGCGTTGGCTCCTTCGGGCCTTGCTCTCCAGAAG
AATACATTGTGCAGTTTTTGCCAAACTTGGACGGGTCAGGCTCAAGTGTC
AGAACAAGTTCTGCGGTTGAGCTGCCTCCGTACAGTAAAAATAGCTCGAA
AGAACCAGGGTTGTGTTCGGTTATTTTTCCGTCGATGTTCTACCGCCGTA
CACGACGGTCCCGGCGATTCACCGGCAAATTGTCGTGTTACCGTCTACCG
CCAAGGGCGGTACCGCCGAAAAACGAGATACCGTCTACCGTCAGGACAAC
TATCGTCGTCCTGGCTACCGTCTGATAAAATACCGTTAGATTCACGATTC
TACCGTCTGGCGGTCCATGAATACCGTCAGATTCACCATCACCGTCCCCC
GCCATCATAAATACCGGCAACCGTTAGATACCGTCAGAAAAGTACCGACA
GATTCGCTATTACCGTCTACCGGCAACTCTAGGTATCGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10134:4360..5149+

>mRNA_H-canaliculatus_F_contig10134.160.1 ID=mRNA_H-canaliculatus_F_contig10134.160.1|Name=mRNA_H-canaliculatus_F_contig10134.160.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=858bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10134:4360..5149+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGGGCAAGCACAAGGGGGGACATGATCGATTTCGACACCATCATCG
ACACCATCGTGGGGCGCACATCGTGAATGGTTGTTTGAAGGGGCACGTGG
TAGACGTCGCCTTTTGGCCGCGCGTTGGCTCCTTCGGGCCTTGCTCTCCA
GAAGAATACATTGTGCAGTTTTTGCCAAACTTGGACGGGTCAGGCTCAAG
TGTCAGAACAAGTTCTGCGGTTGAGCTGCCTCCGTACAGTAAAAATAGCT
CGAAAGAACCAGGGTTGTGTTCGGTTATTTTTCCGTCGATGTTCTACCGC
CGTACACGACGGTCCCGGCGATTCACCGGCAAATTGTCGTGTTACCGTCT
ACCGCCAAGGGCGGTACCGCCGAAAAACGAGATACCGTCTACCGTCAGGA
CAACTATCGTCGTCCTGGCTACCGTCTGAATGAAGGGCAAGCACAAGGGG
GGACATGATCGATTTCGACACCATCATCGACACCATCGTGGGGCGCACAT
CGTGAATGGTTGTTTGAAGGGGCACGTGGTAGACGTCGCCTTTTGGCCGC
GCGTTGGCTCCTTCGGGCCTTGCTCTCCAGAAGAATACATTGTGCAGTTT
TTGCCAAACTTGGACGGGTCAGGCTCAAGTGTCAGAACAAGTTCTGCGGT
TGAGCTGCCTCCGTACAGTAAAAATAGCTCGAAAGAACCAGGGTTGTGTT
CGGTTATTTTTCCGTCGATGTTCTACCGCCGTACACGACGGTCCCGGCGA
TTCACCGGCAAATTGTCGTGTTACCGTCTACCGCCAAGGGCGGTACCGCC
GAAAAACGAGATACCGTCTACCGTCAGGACAACTATCGTCGTCCTGGCTA
CCGTCTGA
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