mRNA_H-canaliculatus_F_contig118.1590.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig118.1590.1
Unique NamemRNA_H-canaliculatus_F_contig118.1590.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig118.1590.1 vs. uniprot
Match: D7FHX6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHX6_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 4.220e-35
Identity = 71/109 (65.14%), Postives = 80/109 (73.39%), Query Frame = 2 
Query:  857 QVVATYNT*LHVYFWSERASLRICPPTAHLCSPLSLHPQGKCGQFVDKPGRLATCSSRLLCPKEQRELIACIRTTRDASMCHEFRDEVERCGVKMSQRMLRAALSDDWF 1183
            Q+++T     H +   ER  L   P    +  PL    QGKCGQF+DKP R A CSSR LCPKEQ +L+ACIRTTRDASMCHEFRDEVERCGVKMSQR+LRAALSDDWF
Sbjct:   40 QLLSTLKLFRHQFSPRERHCLGKHP----VLGPLYEGVQGKCGQFIDKPRRFAVCSSRQLCPKEQSQLLACIRTTRDASMCHEFRDEVERCGVKMSQRLLRAALSDDWF 144
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig118.1590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHX6_ECTSI4.220e-3565.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig118contigH-canaliculatus_F_contig118:44160..47299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_006260.1
Exons2
Model size2013
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig118.1590.1prot_H-canaliculatus_F_contig118.1590.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig118 44619..45074 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928878.4567406-UTR-H-canaliculatus_F_contig118:44159..446181622928878.4567406-UTR-H-canaliculatus_F_contig118:44159..44618Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig118 44160..44618 +
1696845598.583992-UTR-H-canaliculatus_F_contig118:44159..446181696845598.583992-UTR-H-canaliculatus_F_contig118:44159..44618Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig118 44160..44618 +
1622928878.545789-UTR-H-canaliculatus_F_contig118:45074..452161622928878.545789-UTR-H-canaliculatus_F_contig118:45074..45216Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig118 45075..45216 +
1696845598.60004-UTR-H-canaliculatus_F_contig118:45074..452161696845598.60004-UTR-H-canaliculatus_F_contig118:45074..45216Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig118 45075..45216 +
1622928878.557265-UTR-H-canaliculatus_F_contig118:46343..472991622928878.557265-UTR-H-canaliculatus_F_contig118:46343..47299Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig118 46344..47299 +
1696845598.6081047-UTR-H-canaliculatus_F_contig118:46343..472991696845598.6081047-UTR-H-canaliculatus_F_contig118:46343..47299Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig118 46344..47299 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928878.468613-CDS-H-canaliculatus_F_contig118:44618..450741622928878.468613-CDS-H-canaliculatus_F_contig118:44618..45074Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig118 44619..45074 +
1696845598.5920246-CDS-H-canaliculatus_F_contig118:44618..450741696845598.5920246-CDS-H-canaliculatus_F_contig118:44618..45074Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig118 44619..45074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig118.1590.1

>prot_H-canaliculatus_F_contig118.1590.1 ID=prot_H-canaliculatus_F_contig118.1590.1|Name=mRNA_H-canaliculatus_F_contig118.1590.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=152bp
MEDDEGVAATAQPSEDITQQAKTPKTVLKKPPTREDMPRLESAVTVLRHP
FSPRQRTCLSNDPILGPVYEKIMVRVEEGIRYRLEEQYTTFVSIVGSFVC
YSQRGQEEVCLALTLFGDVRVWGCLRVGWSVVPGCCYVQHVASCIFLERA
S*
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mRNA from alignment at H-canaliculatus_F_contig118:44160..47299+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig118.1590.1 ID=mRNA_H-canaliculatus_F_contig118.1590.1|Name=mRNA_H-canaliculatus_F_contig118.1590.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3140bp|location=Sequence derived from alignment at H-canaliculatus_F_contig118:44160..47299+ (Hapterophycus canaliculatus Oshoro5f female)
GCGACCAGGAACGAAAATGGATTGCCTACATTCCAGAAGCCAGACATCGG
AGCGGATCCCTTTCGCTGGACACAAGTCTTGGAAAATCAACTTTGCCCGC
ACCGATCGAATGAACAACAGAGGAGGTTTGAAAGCGCGCCGTAATCCCCC
CTCTGAGCCGCAAGAAGCAACGTCGATGCTCGGGGTGTCAAGGACCCTTC
GCCTTTGCGTGGCTCTTCCGCTTCGAAACCCTTCATCATTTTACGTTATC
CGGCCATCTAATTTCCAGCCCTATCCAGTTTCGACTGGGCCCTACAACAA
ATCATGGGAGATCCCAGCAGCTGGCAGATCTTACCTGCATTCACGGAGTC
CCCAAACCCCGCGGGTTGCCGCGGGGGAGGGGCAGACTTGAATCACGGGG
AGGAGAGCAGGTAGCAGCTTTGTAGCAGGCAGGACAAATTCAGATGGGTC
GGCGTTACAATGGAGGACGATGAGGGAGTAGCGGCTACGGCACAACCAAG
CGAGGACATAACGCAGCAGGCCAAAACGCCAAAGACGGTCTTGAAGAAAC
CACCAACACGAGAGGACATGCCTCGGTTGGAATCGGCGGTGACGGTCTTG
AGGCACCCTTTTTCACCTCGGCAGCGAACATGTCTATCCAATGATCCCAT
CCTTGGCCCTGTATACGAGAAAATCATGGTGAGGGTTGAGGAGGGCATCA
GATACCGTTTAGAGGAGCAGTATACTACGTTCGTGTCGATTGTCGGTTCA
TTCGTGTGTTATTCTCAACGAGGGCAAGAGGAGGTTTGCCTCGCGCTGAC
TCTATTTGGAGATGTGCGTGTTTGGGGATGCCTCCGCGTTGGCTGGTCCG
TCGTCCCAGGTTGTTGCTACGTACAACACGTAGCTTCATGTATATTTCTG
GAGCGAGCGAGCTAGCCTGCGCATCTGCCCCCCCACGGCCCATCTCTGTT
CGCCGCTTTCTCTGCACCCTCAGGGAAAATGCGGTCAGTTTGTAGATAAG
CCGGGGAGGCTCGCCACCTGTTCCTCGCGGCTGCTGTGCCCGAAAGAGCA
AAGAGAGGTATGAAGGAGTGACCGACCGCGGTGAGGTACAATGACGAATT
CCAGCCCGAAGTATTTTGTGCCCTACACGAGCGCCACAGTGTGATTGATC
CGTACTGCCCGTCGTGGGGCAGGTTGCATTCTGTGAAAGGTACCGTGAAC
CTTCGATTCTCGTACTAGCCTGTGCCTACCGTCCGGGGTCAACACACTTT
CGTGATGAGAGGACAATCCATTGACCGTTTGCATATATACCGCAACTCTG
TTGACGCCGGCCCTACAACACATCCCTTGAGAGGAAAAACTGCTTTGCTG
GTGTTGTGTTGCGGGGAAACAATGGGTTCTCCCCGAATTTTTGCTGTTGA
CATCTTACAGACTACAACCTGAGTTTCTCACGACCCCCGGTACAATAGCT
GTATCACAATCGGTTTCTGTGCAGGCCAATGCATTGAATCTTCGCTACAA
GGTAGTAAACGAAACCCTCCCGAGCCTTCTCCCAGAGTGGCTTTCTCCCA
CATAGTCAAGTTTTGTTTTCCAGACAGGAACATTTTGTCTTCATTTGGTG
GCTGGGCATGATCGTAAGTCAAAACTGATTCACTCCATTCACTGTCTGTT
GGCGTCAACGATGGGATGTCTGACTTCTGGTGAACAACACCCGTTTTCGG
ACCCGCTACTCACCATGGTCCTTCTTTTAAAAAAAGACCGGATCAGGAAC
GAATGAATGTTGGAGGCAGAGTAGAGTTCGAATTCGCGATTGCTCGTGCA
AGGTGTGACGTGGTGCACCCGTGGAAATACGGCACAGCAGAAGACTAGGC
GTCGAACTGGCGAAACCCTCCGGACAAGCGTAGTGGGCGTGTAGAACCCT
GTGAAAGCACGCGAGCAAAAGAAGAATGTGACGACGTGGAAGAAGTCCTC
GTTGACAGCCGCTTGAATTCGAGTTCGAACCATTTCTATTCATCTCGCCT
TTCATTTCGCCGCTACTGCTGTGAACCTGAGAATAGTAAATCGGCCTCGA
TTGATCGATTGGCGTTGGAGATACTTTTATTTAGAAAGCTCACGCCCGGC
ACTTGCACCTTTCATTTTCCCCTTCTCAAACGATGTTGCTGATACCCATT
CCCCGCATCAACGACCCTTGTCGATCTTTTACAGTTGATCGCGTGCATCC
GCACCACGCGTGACGCGAGCATGTGCCACGAGTTTAGGGACGAAGTCGAG
CGCTGTGGAGTGAAGATGTCTCAGCGCATGCTTCGAGCAGCGTTGTCCGA
CGACTGGTTCTAATTGTTTGCAAGCTGCGACTGGGGGAAGGGGGGCATGG
AAAGATGAGGGCGGTGCTGGTCAAGAGGTTTCACGTAGTACATCGGTCCT
GACATGTGCCGACTTGCAATGTGATGTTTCGTCGCCAACCAGATGCTTGT
GCGATTGCTGGTTGATAAGGTTCGTGTGCATTTCGGTCTTATGTTCAAGG
AGAAATATGACGCGATAGCGCAGAAACCTGCAGAAAAACTTGAGCACGGC
ATGTAGGCAGTGAGATGTGCAGCCTCGACCCGGCCTCGCACGGCGCTCGC
ATTGTTGTTCTCAAGATGCCGTGAGAGCAGAAATGCGGCTGTCGTTGGGC
CTCTCTCGTTCGATCCAGTGACGGGGACAGGGCGAGGGCGGTGGGCGGGT
TCCTCAGAGAAATTGACTGTCGCTGGCTGTGAATGACTGCGGCGATAAAA
CATGTACGCACAAGAGGAGCGAGCGATCGACGAGGGATTTGGCTTCGTAA
AAATATTCCGTTCCTGACACCGGAGAGTAATGCCTTGATTTGATGCCTTT
AGGACGCACAAGGGTAATCCTATTCACAGCCTTTCAAAACCCAGATCACT
CTGCTGCACAGTAGTGGCCTGCTGCTTGCTTAGTGTTGTGCTTATCCTTT
TGTATCAATTTTTATCTCGCTGGCAGCCCAAGCGCCTTTGTGGTAGGTTA
TACATCGGGCGTACACCATGAAGGTTACACAAAACAAATCCTCTTTCTTC
GGTTTTCCGCATTTCTCTCATGGTGCCCCGACCTTCAAGCGCAGACGCAA
GAAGGGTTCAACGATTACGTTCCTCATGCGTGCTACAAGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig118:44160..47299+

>mRNA_H-canaliculatus_F_contig118.1590.1 ID=mRNA_H-canaliculatus_F_contig118.1590.1|Name=mRNA_H-canaliculatus_F_contig118.1590.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=912bp|location=Sequence derived from alignment at H-canaliculatus_F_contig118:44160..47299+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGGACGATGAGGGAGTAGCGGCTACGGCACAACCAAGCGAGGACAT
AACGCAGCAGGCCAAAACGCCAAAGACGGTCTTGAAGAAACCACCAACAC
GAGAGGACATGCCTCGGTTGGAATCGGCGGTGACGGTCTTGAGGCACCCT
TTTTCACCTCGGCAGCGAACATGTCTATCCAATGATCCCATCCTTGGCCC
TGTATACGAGAAAATCATGGTGAGGGTTGAGGAGGGCATCAGATACCGTT
TAGAGGAGCAGTATACTACGTTCGTGTCGATTGTCGGTTCATTCGTGTGT
TATTCTCAACGAGGGCAAGAGGAGGTTTGCCTCGCGCTGACTCTATTTGG
AGATGTGCGTGTTTGGGGATGCCTCCGCGTTGGCTGGTCCGTCGTCCCAG
GTTGTTGCTACGTACAACACGTAGCTTCATGTATATTTCTGGAGCGAGCG
AGCTAGATGGAGGACGATGAGGGAGTAGCGGCTACGGCACAACCAAGCGA
GGACATAACGCAGCAGGCCAAAACGCCAAAGACGGTCTTGAAGAAACCAC
CAACACGAGAGGACATGCCTCGGTTGGAATCGGCGGTGACGGTCTTGAGG
CACCCTTTTTCACCTCGGCAGCGAACATGTCTATCCAATGATCCCATCCT
TGGCCCTGTATACGAGAAAATCATGGTGAGGGTTGAGGAGGGCATCAGAT
ACCGTTTAGAGGAGCAGTATACTACGTTCGTGTCGATTGTCGGTTCATTC
GTGTGTTATTCTCAACGAGGGCAAGAGGAGGTTTGCCTCGCGCTGACTCT
ATTTGGAGATGTGCGTGTTTGGGGATGCCTCCGCGTTGGCTGGTCCGTCG
TCCCAGGTTGTTGCTACGTACAACACGTAGCTTCATGTATATTTCTGGAG
CGAGCGAGCTAG
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