mRNA_H-canaliculatus_F_contig118.1588.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig118.1588.1
Unique NamemRNA_H-canaliculatus_F_contig118.1588.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig118.1588.1 vs. uniprot
Match: D7FHX4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX4_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 1.370e-88
Identity = 142/233 (60.94%), Postives = 166/233 (71.24%), Query Frame = 1 
Query:    1 RYSRVYREIVRLRHDIQTSDHPFQNVASPGRDLVYLPSFSWQYLGYNMRPLMESLCWVLAAMTAGLHGATVALHPQYGWDWRRSE-EFGVEGGLVEGGQDQKRHATPRFTTSRMKKNVLGVVMERRGNQSPHRLIQGVLEGLDRSRFRLVMFTRDYVTEFPDAGQALLELADEVLILAWHPFVKGLADPFADRGVISSAQAWTLAEIAFGHGHPVTSGSPGIDYFVSSDLFET 696
            R+SRV  E  RL   IQTSD P +NV +PGRDL+++PSFSW YLG NMRPLMESLCW+LAAMT GLH A   L P+  WD   S    G  G   EG Q Q     P    ++  +  +G VMER GN+SPHRLIQGVLEG+DRSRFRLV+F++DY   + +AG+ALLE A+EV I  WHPF +GL DPFADRGVI+S Q      + FGHGHPVTSGSPGIDYFVSSDLFET
Sbjct:    3 RFSRVSAETRRLVEHIQTSDAPLRNVPNPGRDLIHIPSFSWPYLGRNMRPLMESLCWILAAMTVGLHEAIARLQPRNAWDNSTSSGRQGTRGAFGEGEQPQISLTPPPSIATKDVRITVGFVMERWGNRSPHRLIQGVLEGMDRSRFRLVVFSQDYTGYYCEAGKALLEAAEEVKIFPWHPFAEGLTDPFADRGVIASVQ------VVFGHGHPVTSGSPGIDYFVSSDLFET 229
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BLAST of mRNA_H-canaliculatus_F_contig118.1588.1 vs. uniprot
Match: A0A6H5JQ47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ47_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 8.990e-58
Identity = 111/218 (50.92%), Postives = 131/218 (60.09%), Query Frame = 1 
Query:  142 MRPLMESLCWVLAAMTAGLHGATVALHPQYGWDWRRSEEFGVEGGLVEGGQDQKRHATPRFTTSRMKKNVLGVVMERRGNQSPHRLIQGVLEGLDRSRFRLVMFTRDYVTEFPDAGQALLELADEVLILAWHPFVKGLADPFADRGVISSAQAWTL---------------------AEIAFGHGHPVTSGSPGIDYFVSSDLFETATSIDAREARRL 732
            MRPLMESLCW+LAA+  GLH A   L P+  W             L+E   D++R    R T        +G VMER GN+SPH LIQ +LE +DRSRFRLV+F+RDY   + +AGQAL E A+EV I  WHPFV+GL DPFADRGVI+S Q   L                      ++ FGHGH VTSGSPGID FVSSDL+ET  SIDARE   L
Sbjct:    1 MRPLMESLCWILAALMVGLHEAIAQLQPRKAW---------TTASLLE---DKERRGRVRIT--------VGFVMERWGNRSPHHLIQRILESVDRSRFRLVVFSRDYTDCYCEAGQALPEAAEEVKIFPWHPFVEGLTDPFADRGVIASVQVDVLLSAALGNTLWSHLLALGRLAPVQVVFGHGHSVTSGSPGIDCFVSSDLYETTASIDARELAEL 198
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BLAST of mRNA_H-canaliculatus_F_contig118.1588.1 vs. uniprot
Match: A0A3L7P3B7_9BACT (TIGR03032 family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7P3B7_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 7.330e-5
Identity = 73/247 (29.55%), Postives = 104/247 (42.11%), Query Frame = 1 
Query:   22 EIVRLRHDIQT--SDHPFQNVASPGRDLVYLPSFSWQYLGYNMRPLMESLCWVLAAMTAGLHGATVALHPQYGWDWRRSEEFGVEGGLVEGGQDQKRHATPRFTTSRMKKNVLGVVMERRGNQSPHRLIQGVLEGLDRSRFRL-VMFTRDYVTEFPDAGQALLELADEVLILAWH--PFVKGLADP------FADRGVISSAQAWTLAEIAFGH------GHPVTSGSPGIDYFVSSDLFETATSID 711
            E+ R RH+ ++   D   + V      L+   SF W Y G N R +M+            L G+ V      G   RRS     +GGLV  G          F ++  + + +G            RL  G LE LDRSRF + V  T     EF D  ++    AD+ +++       +K LAD       FAD G+   A + TLA            GHP T+GS  +DYF+SS+L +  +S D
Sbjct:  511 ELQRWRHEQESVLQDMSLKGVVVDASRLLVPTSFFWPYQGLNDRSIMQ------------LRGSIVRGRDAIGRG-RRSSAGRAKGGLVRVG----------FLSAYFRNHTIG------------RLNVGRLEQLDRSRFHVTVCSTGGGSDEFSDRFESA---ADDFVVVPRDVTAAIKLLADLKLAVLIFADVGM--DALSTTLASSRMARVQCATWGHPETTGSEFMDYFLSSELLDDESSQD 717
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig118.1588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FHX4_ECTSI1.370e-8860.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQ47_9PHAE8.990e-5850.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3L7P3B7_9BACT7.330e-529.55TIGR03032 family protein n=1 Tax=Planctomycetes ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig118contigH-canaliculatus_F_contig118:37118..38591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_006240.1
Exons2
Model size771
Cds size771
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928878.319407-CDS-H-canaliculatus_F_contig118:37117..377271622928878.319407-CDS-H-canaliculatus_F_contig118:37117..37727Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig118 37118..37727 +
1696845598.5304248-CDS-H-canaliculatus_F_contig118:37117..377271696845598.5304248-CDS-H-canaliculatus_F_contig118:37117..37727Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig118 37118..37727 +
1622928878.3451614-CDS-H-canaliculatus_F_contig118:38430..385911622928878.3451614-CDS-H-canaliculatus_F_contig118:38430..38591Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig118 38431..38591 +
1696845598.5388734-CDS-H-canaliculatus_F_contig118:38430..385911696845598.5388734-CDS-H-canaliculatus_F_contig118:38430..38591Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig118 38431..38591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig118.1588.1prot_H-canaliculatus_F_contig118.1588.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig118 37118..38591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig118.1588.1

>prot_H-canaliculatus_F_contig118.1588.1 ID=prot_H-canaliculatus_F_contig118.1588.1|Name=mRNA_H-canaliculatus_F_contig118.1588.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=257bp
RYSRVYREIVRLRHDIQTSDHPFQNVASPGRDLVYLPSFSWQYLGYNMRP
LMESLCWVLAAMTAGLHGATVALHPQYGWDWRRSEEFGVEGGLVEGGQDQ
KRHATPRFTTSRMKKNVLGVVMERRGNQSPHRLIQGVLEGLDRSRFRLVM
FTRDYVTEFPDAGQALLELADEVLILAWHPFVKGLADPFADRGVISSAQA
WTLAEIAFGHGHPVTSGSPGIDYFVSSDLFETATSIDAREARRLADAESD
VPTATTA
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mRNA from alignment at H-canaliculatus_F_contig118:37118..38591+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig118.1588.1 ID=mRNA_H-canaliculatus_F_contig118.1588.1|Name=mRNA_H-canaliculatus_F_contig118.1588.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1474bp|location=Sequence derived from alignment at H-canaliculatus_F_contig118:37118..38591+ (Hapterophycus canaliculatus Oshoro5f female)
AGGTATTCCCGGGTGTATCGCGAGATTGTCCGCCTCCGGCACGACATTCA
GACCTCAGACCATCCATTTCAAAACGTGGCCAGCCCCGGCCGAGACTTGG
TATATTTGCCAAGCTTTTCCTGGCAGTATCTAGGATACAACATGCGCCCC
CTGATGGAAAGCTTATGCTGGGTACTTGCAGCAATGACGGCCGGATTGCA
CGGAGCCACCGTAGCATTGCACCCGCAATACGGATGGGATTGGAGGCGGT
CTGAGGAATTTGGGGTAGAAGGGGGGCTCGTTGAAGGGGGGCAAGATCAA
AAACGGCATGCCACTCCTCGCTTCACAACCTCAAGAATGAAAAAAAATGT
CCTGGGAGTAGTGATGGAAAGGCGCGGAAACCAATCGCCTCATCGCCTGA
TCCAGGGCGTCTTGGAGGGCCTGGACCGCTCGAGGTTTCGACTCGTGATG
TTTACGCGGGACTACGTGACGGAGTTTCCCGACGCGGGACAGGCCTTGCT
GGAGCTTGCGGACGAGGTCCTGATCTTAGCGTGGCACCCTTTTGTCAAGG
GATTGGCGGACCCGTTCGCTGATCGTGGGGTCATCTCATCTGCCCAGGCA
TGGACGCTTGGTTCCATCGTGATTATCTTACCAGCTCGCTCGTGCAAACG
ACTGTATTGGCGAAGGGTCTGCCTGCGTCAAGTTCGCGCTGCCCGTTCAT
GGCCTTATTGCTTCCACTCGTGTTTCTTCGAGAAACCGCGGTCAACCGCG
CTTCTCTGCGGCTTAATGGGGTAGCGGAGCCCGCCCGAACATTGATCGTT
TGCGGCGACGGCAGACTTGTGCTTTTCCGACGTTTAGCAACAGTTCCGTC
TTGTCCACATGCTTTCCTCTGCTTGCCTTCCTCCTCGAAAAATGAGTTCG
AGAGCTTGGGCTTCGATTGTTGCTCGAAACCAGGTAGACGTCCTACTTTA
CACCGCCTTGGGCAACACCTTATGGAGTCACCTGCTTGCGCTGGGTCGAC
TAGCGCCTGTACAGGTAAAGAGTTACTTGGCACCTGGCGAGACGAAGGAT
TCTCGTCGTTATCGGGCCGCGAGAGACTTCTTGACACCAGACGCAAATGA
TGCTCTGCTTTGAAGGGGAACCTCCTACCGAAGCGGCCACTCTCCGAGAA
GGCGCATGTGTGCTTTGTTGTAAGCGGTTGGGCTCAGTGACCCAGGCGGG
TGATCCTTGTGTTCATACGATACACCAGCCTGTCTCCATAACTTCCCGCC
GATCGATTCCACTGTTTGCGCCCGAGGCCTTGGCTAACTTTGTCCACCCT
TTTTCGTGACGAGCGGAGATCGCTTTCGGGCACGGCCACCCAGTTACGTC
GGGCTCGCCGGGGATCGACTATTTCGTGAGCAGCGATCTTTTTGAGACGG
CGACGAGCATCGATGCGCGAGAGGCTCGCCGGCTTGCCGACGCGGAGAGC
GACGTACCGACGGCAACCACCGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig118:37118..38591+

>mRNA_H-canaliculatus_F_contig118.1588.1 ID=mRNA_H-canaliculatus_F_contig118.1588.1|Name=mRNA_H-canaliculatus_F_contig118.1588.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1542bp|location=Sequence derived from alignment at H-canaliculatus_F_contig118:37118..38591+ (Hapterophycus canaliculatus Oshoro5f female)
AGGTATTCCCGGGTGTATCGCGAGATTGTCCGCCTCCGGCACGACATTCA
GACCTCAGACCATCCATTTCAAAACGTGGCCAGCCCCGGCCGAGACTTGG
TATATTTGCCAAGCTTTTCCTGGCAGTATCTAGGATACAACATGCGCCCC
CTGATGGAAAGCTTATGCTGGGTACTTGCAGCAATGACGGCCGGATTGCA
CGGAGCCACCGTAGCATTGCACCCGCAATACGGATGGGATTGGAGGCGGT
CTGAGGAATTTGGGGTAGAAGGGGGGCTCGTTGAAGGGGGGCAAGATCAA
AAACGGCATGCCACTCCTCGCTTCACAACCTCAAGAATGAAAAAAAATGT
CCTGGGAGTAGTGATGGAAAGGCGCGGAAACCAATCGCCTCATCGCCTGA
TCCAGGGCGTCTTGGAGGGCCTGGACCGCTCGAGGTTTCGACTCGTGATG
TTTACGCGGGACTACGTGACGGAGTTTCCCGACGCGGGACAGGCCTTGCT
GGAGCTTGCGGACGAGGTCCTGATCTTAGCGTGGCACCCTTTTGTCAAGG
GATTGGCGGACCCGTTCGCTGATCGTGGGGTCATCTCATCTGCCCAGGCA
TGGACGCTTGAGGTATTCCCGGGTGTATCGCGAGATTGTCCGCCTCCGGC
ACGACATTCAGACCTCAGACCATCCATTTCAAAACGTGGCCAGCCCCGGC
CGAGACTTGGTATATTTGCCAAGCTTTTCCTGGCAGTATCTAGGATACAA
CATGCGCCCCCTGATGGAAAGCTTATGCTGGGTACTTGCAGCAATGACGG
CCGGATTGCACGGAGCCACCGTAGCATTGCACCCGCAATACGGATGGGAT
TGGAGGCGGTCTGAGGAATTTGGGGTAGAAGGGGGGCTCGTTGAAGGGGG
GCAAGATCAAAAACGGCATGCCACTCCTCGCTTCACAACCTCAAGAATGA
AAAAAAATGTCCTGGGAGTAGTGATGGAAAGGCGCGGAAACCAATCGCCT
CATCGCCTGATCCAGGGCGTCTTGGAGGGCCTGGACCGCTCGAGGTTTCG
ACTCGTGATGTTTACGCGGGACTACGTGACGGAGTTTCCCGACGCGGGAC
AGGCCTTGCTGGAGCTTGCGGACGAGGTCCTGATCTTAGCGTGGCACCCT
TTTGTCAAGGGATTGGCGGACCCGTTCGCTGATCGTGGGGTCATCTCATC
TGCCCAGGCATGGACGCTTGCGGAGATCGCTTTCGGGCACGGCCACCCAG
TTACGTCGGGCTCGCCGGGGATCGACTATTTCGTGAGCAGCGATCTTTTT
GAGACGGCGACGAGCATCGATGCGCGAGAGGCTCGCCGGCTTGCCGACGC
GGAGAGCGACGTACCGACGGCAACCACCGCGCGGAGATCGCTTTCGGGCA
CGGCCACCCAGTTACGTCGGGCTCGCCGGGGATCGACTATTTCGTGAGCA
GCGATCTTTTTGAGACGGCGACGAGCATCGATGCGCGAGAGGCTCGCCGG
CTTGCCGACGCGGAGAGCGACGTACCGACGGCAACCACCGCG
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