mRNA_H-canaliculatus_F_contig10133.159.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10133.159.1
Unique NamemRNA_H-canaliculatus_F_contig10133.159.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10133.159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10133contigH-canaliculatus_F_contig10133:3915..5038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1093
Cds size621
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10133.159.1prot_H-canaliculatus_F_contig10133.159.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10133 3915..4535 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928642.6320329-CDS-H-canaliculatus_F_contig10133:3914..45351622928642.6320329-CDS-H-canaliculatus_F_contig10133:3914..4535Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10133 3915..4535 +
1696845509.4722092-CDS-H-canaliculatus_F_contig10133:3914..45351696845509.4722092-CDS-H-canaliculatus_F_contig10133:3914..4535Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10133 3915..4535 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928642.6438625-UTR-H-canaliculatus_F_contig10133:4535..48311622928642.6438625-UTR-H-canaliculatus_F_contig10133:4535..4831Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10133 4536..4831 +
1696845509.4859805-UTR-H-canaliculatus_F_contig10133:4535..48311696845509.4859805-UTR-H-canaliculatus_F_contig10133:4535..4831Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10133 4536..4831 +
1622928642.6543949-UTR-H-canaliculatus_F_contig10133:4862..50381622928642.6543949-UTR-H-canaliculatus_F_contig10133:4862..5038Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10133 4863..5038 +
1696845509.495864-UTR-H-canaliculatus_F_contig10133:4862..50381696845509.495864-UTR-H-canaliculatus_F_contig10133:4862..5038Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10133 4863..5038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10133.159.1

>prot_H-canaliculatus_F_contig10133.159.1 ID=prot_H-canaliculatus_F_contig10133.159.1|Name=mRNA_H-canaliculatus_F_contig10133.159.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=207bp
MLESSRSRSVALGRPQGTALSVFSVGSFPLATPVYSLFKENITTPLERLL
FSLCLGCPSLNVSLCLCQTIPFLLSPRLRFSASLPAWVVTFCPVSLTHSH
TRHIFSHLLTCCMPVILALRAQSLSLSLSLSLSLDVRLSDYPTTSLPFSP
VSVSQSQCLSLSLCVTYSADVFVRRLYTSHVSHFFKLQAYTQRENDDRGE
NSRRRF*
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mRNA from alignment at H-canaliculatus_F_contig10133:3915..5038+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10133.159.1 ID=mRNA_H-canaliculatus_F_contig10133.159.1|Name=mRNA_H-canaliculatus_F_contig10133.159.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1124bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10133:3915..5038+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTAGAGTCCAGCAGGAGCCGTTCGGTCGCTCTCGGGCGCCCACAAGG
CACCGCTTTGAGTGTTTTCAGCGTTGGGAGTTTTCCGCTCGCCACTCCAG
TCTACTCTCTTTTTAAAGAAAACATAACAACACCGTTGGAACGCCTCCTC
TTCTCTCTTTGTCTCGGCTGTCCATCGCTCAATGTCTCTCTCTGCCTGTG
TCAGACTATCCCATTTCTTCTCTCTCCCCGCCTCCGTTTTTCAGCCTCGC
TGCCTGCCTGGGTTGTCACATTTTGTCCTGTATCTCTGACACACTCTCAT
ACACGTCACATCTTCTCACATCTTCTGACATGTTGCATGCCGGTAATTCT
CGCGTTGCGTGCTCAATCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TAGATGTACGTCTCTCAGACTATCCCACTACAAGCTTGCCCTTTTCTCCC
GTCTCTGTTTCGCAGTCTCAGTGTCTCTCGCTTTCTCTGTGCGTTACATA
CTCTGCCGACGTATTCGTTCGCAGACTCTACACGTCCCACGTCTCACATT
TTTTCAAACTGCAAGCGTACACGCAGAGAGAAAACGATGACAGAGGCGAA
AACAGCAGGAGAAGGTTCTGAAGTACACGCAGACGTGAAACTGAAAGCAA
CAGGGAAACCGAACACTCATCCCTCGGAAAATGGTGCCCTCAATGTCGCA
GAACAATTGCTTGCAGGGGTCACTTCTCCAGGTCTCACGGGTGGCCTGTT
GTCTCATACGTTGGTGTGTGCCATTCGTTTGTCTGCCGTCGACGGCACGG
TCAGGACCGAGCAGTCAACTGCAATGCGACGTCATGTCCTTCAGCTCGCT
TAAACGAGGTCTAGACACGCCGATGTACGACAACTCAACGTTCGTCGGCG
AAGGGGACGAAATCCGCGTTCCGAGATATTTACATACCAGGTACTGAGCA
TTTTGAGACAGGTCTCTTCTTCCCATCATTCTCGGCCTACACGCGAGCTC
GACCTTCCACCCCACGCCGCACTCCCTACACGCATCGCACGCAACTCACG
CTTGCCCACGCACACGAAATCACTCTTACACACAGACAGGCAAACCACGC
ACACCACTTTTCCAGGCATCTTGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10133:3915..5038+

>mRNA_H-canaliculatus_F_contig10133.159.1 ID=mRNA_H-canaliculatus_F_contig10133.159.1|Name=mRNA_H-canaliculatus_F_contig10133.159.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1242bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10133:3915..5038+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTAGAGTCCAGCAGGAGCCGTTCGGTCGCTCTCGGGCGCCCACAAGG
CACCGCTTTGAGTGTTTTCAGCGTTGGGAGTTTTCCGCTCGCCACTCCAG
TCTACTCTCTTTTTAAAGAAAACATAACAACACCGTTGGAACGCCTCCTC
TTCTCTCTTTGTCTCGGCTGTCCATCGCTCAATGTCTCTCTCTGCCTGTG
TCAGACTATCCCATTTCTTCTCTCTCCCCGCCTCCGTTTTTCAGCCTCGC
TGCCTGCCTGGGTTGTCACATTTTGTCCTGTATCTCTGACACACTCTCAT
ACACGTCACATCTTCTCACATCTTCTGACATGTTGCATGCCGGTAATTCT
CGCGTTGCGTGCTCAATCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TAGATGTACGTCTCTCAGACTATCCCACTACAAGCTTGCCCTTTTCTCCC
GTCTCTGTTTCGCAGTCTCAGTGTCTCTCGCTTTCTCTGTGCGTTACATA
CTCTGCCGACGTATTCGTTCGCAGACTCTACACGTCCCACGTCTCACATT
TTTTCAAACTGCAAGCGTACACGCAGAGAGAAAACGATGACAGAGGCGAA
AACAGCAGGAGAAGGTTCTGAATGTTAGAGTCCAGCAGGAGCCGTTCGGT
CGCTCTCGGGCGCCCACAAGGCACCGCTTTGAGTGTTTTCAGCGTTGGGA
GTTTTCCGCTCGCCACTCCAGTCTACTCTCTTTTTAAAGAAAACATAACA
ACACCGTTGGAACGCCTCCTCTTCTCTCTTTGTCTCGGCTGTCCATCGCT
CAATGTCTCTCTCTGCCTGTGTCAGACTATCCCATTTCTTCTCTCTCCCC
GCCTCCGTTTTTCAGCCTCGCTGCCTGCCTGGGTTGTCACATTTTGTCCT
GTATCTCTGACACACTCTCATACACGTCACATCTTCTCACATCTTCTGAC
ATGTTGCATGCCGGTAATTCTCGCGTTGCGTGCTCAATCGCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTAGATGTACGTCTCTCAGACTATCCCACT
ACAAGCTTGCCCTTTTCTCCCGTCTCTGTTTCGCAGTCTCAGTGTCTCTC
GCTTTCTCTGTGCGTTACATACTCTGCCGACGTATTCGTTCGCAGACTCT
ACACGTCCCACGTCTCACATTTTTTCAAACTGCAAGCGTACACGCAGAGA
GAAAACGATGACAGAGGCGAAAACAGCAGGAGAAGGTTCTGA
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