mRNA_H-canaliculatus_F_contig11722.1531.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11722.1531.1
Unique NamemRNA_H-canaliculatus_F_contig11722.1531.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11722.1531.1 vs. uniprot
Match: A0A4P9WP25_9FUNG (Telomere-capping, CST complex subunit-domain-containing protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WP25_9FUNG)

HSP 1 Score: 73.9 bits (180), Expect = 6.630e-15
Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:    1 LESYDAAADAAVVEYKGHQLGIDTSLLTDFQFRIASLYEFIGEIEARRKGESAGGEERNKRKTLLKARVCRNVDGLDTHLFEKALEVRRAF 273
            L SYD   + AV+E+ G +L +D +LL DF  R+ SL +FIGE+E       AGG        +L+AR+ RNVDGLD  LFE++L +RR F
Sbjct:   36 LISYDVPTNIAVIEHGGERLLVDVTLLGDFPHRLKSLLQFIGELEDH--APHAGGGS-----VVLRARIVRNVDGLDLKLFEQSLLIRRRF 119
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BLAST of mRNA_H-canaliculatus_F_contig11722.1531.1 vs. uniprot
Match: D8RL68_SELML (Uncharacterized protein (Fragment) n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RL68_SELML)

HSP 1 Score: 72.0 bits (175), Expect = 2.240e-14
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:    1 LESYDAAADAAVVEYKGHQLGIDTSLLTDFQFRIASLYEFIGEIEARRKGESAGGEERNKRKTLLKARVCRNVDGLDTHLFEKALEVRRAF 273
            LES+D  +  A + ++G +L +DT+LL D   R  SLY+FIGE+  +                +L+ARV RNVDGLD  L+EKAL +RR F
Sbjct:   31 LESFDVESGVAHIRHEGAKLAVDTTLLRDIHLRPGSLYQFIGELLLQNG-------------MMLRARVARNVDGLDVKLYEKALRLRRIF 108
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BLAST of mRNA_H-canaliculatus_F_contig11722.1531.1 vs. uniprot
Match: A0A433PWY1_9FUNG (Telomere-capping, CST complex subunit-domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PWY1_9FUNG)

HSP 1 Score: 71.2 bits (173), Expect = 8.860e-14
Identity = 41/91 (45.05%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:    1 LESYDAAADAAVVEYKGHQLGIDTSLLTDFQFRIASLYEFIGEIEARRKGESAGGEERNKRKTLLKARVCRNVDGLDTHLFEKALEVRRAF 273
            L  YDA A+ AV+E++G +L +DTSLL  F  R  SL+++IGEI       S   E       +L+ARV RN+DGLD  L+E+A+ +RR F
Sbjct:   35 LLEYDAHANRAVIEHEGARLLVDTSLLGVFPHRERSLFQWIGEI-------SVSDEHTAAAPLILRARVVRNIDGLDLRLYEQAVRLRRRF 118
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BLAST of mRNA_H-canaliculatus_F_contig11722.1531.1 vs. uniprot
Match: D7G0N6_ECTSI (Ubiquitin-like protein ATG12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0N6_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 9.650e-14
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 LESYDAAADAAVVEYKGHQLGIDTSLLTDFQFRIASLYEFIGEIE 135
            L+SYDAAAD AVV+YKG QL ID  LLTDFQFRI SLYEFIGE++
Sbjct:   34 LKSYDAAADVAVVDYKGDQLTIDACLLTDFQFRIDSLYEFIGEVQ 78
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BLAST of mRNA_H-canaliculatus_F_contig11722.1531.1 vs. uniprot
Match: W4H842_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H842_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.020e-13
Identity = 41/92 (44.57%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:    1 LESYDAAADAAVVEYKGHQLGIDTSLLTDFQFRIASLYEFIGEIEARRKGESAGGEERNKRKTLLKARVCRNVDGLDTHLFEKALEVRRAFL 276
            L+ YDAA   A + ++   + + T LL +F F I SLY+FIGE  A            N+ K  L+ARV RNVDGLDT LF  AL++RR F+
Sbjct:   29 LDMYDAAKSIASLSFQNAVIVVATDLLVNFDFAIGSLYQFIGETYA------------NEGKMQLRARVGRNVDGLDTQLFVDALKLRREFI 108
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BLAST of mRNA_H-canaliculatus_F_contig11722.1531.1 vs. uniprot
Match: A0A024UV78_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UV78_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.330e-12
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:    1 LESYDAAADAAVVEYKGHQLGIDTSLLTDFQFRIASLYEFIGEIEARRKGESAGGEERNKRKTLLKARVCRNVDGLDTHLFEKALEVRRAFL 276
            L+ YDA+   A + ++   + + T LL +F F + SLY+FIGE               N+ K  L+ARV RNVDGLDT LF  AL++RR F+
Sbjct:   29 LDMYDASKCLATLSFQNSVIVVATDLLVNFDFAVGSLYQFIGETYT------------NEGKMQLRARVGRNVDGLDTQLFLDALKLRREFI 108
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BLAST of mRNA_H-canaliculatus_F_contig11722.1531.1 vs. uniprot
Match: A0A1S8W7W3_9FUNG (Uncharacterized protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W7W3_9FUNG)

HSP 1 Score: 65.9 bits (159), Expect = 4.250e-12
Identity = 38/92 (41.30%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:    1 LESYDAAADAAVVEYKGHQLGIDTSLLTDFQFRIASLYEFIGEIEARRKGESAGGEERNKRKTLLKARVCRNVDGLDTHLFEKALEVRRAFL 276
            L SY+   + A VEY+G QL +DT+LL  F ++I SLY++IGE+       +  G+        L+A++ RNVD LDT LFE++L++RR  +
Sbjct:   12 LRSYNVHTNMAQVEYRGQQLLVDTALLGIFDYKINSLYQWIGELVV---STTDTGD-----CICLQAKILRNVDELDTALFEESLKLRRQIM 95
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BLAST of mRNA_H-canaliculatus_F_contig11722.1531.1 vs. uniprot
Match: A0A835UYM1_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835UYM1_VANPL)

HSP 1 Score: 66.2 bits (160), Expect = 5.770e-12
Identity = 36/91 (39.56%), Postives = 58/91 (63.74%), Query Frame = 1 
Query:    1 LESYDAAADAAVVEYKGHQLGIDTSLLTDFQFRIASLYEFIGEIEARRKGESAGGEERNKRKTLLKARVCRNVDGLDTHLFEKALEVRRAF 273
            LESY + +  AV+   G  L +DT  L D  FRI+S+Y+FIGE++ + +G  A          +L+AR+ RNVDG+D +L+ +++++RR F
Sbjct:   34 LESYSSESAIAVIVDGGVTLRVDTQHLRDINFRISSIYQFIGELKIQ-EGNQA----------ILEARIGRNVDGMDLNLYHQSIQLRRKF 113
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BLAST of mRNA_H-canaliculatus_F_contig11722.1531.1 vs. uniprot
Match: A0A835ZB80_9STRA (Telomere-capping, CST complex subunit-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB80_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.040e-11
Identity = 39/89 (43.82%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:   10 YDAAADAAVVEYKGHQLGIDTSLLTDFQFRIASLYEFIGEIEARRKGESAGGEERNKRKTLLKARVCRNVDGLDTHLFEKALEVRRAFL 276
            ++AA   A +++    L +D +LL +F FRI SL+EFIG ++       AG E R      + AR  RNVDGLD  L+E  L VRRAFL
Sbjct:    3 FNAATRVATLQHGTCTLAVDATLLPEFDFRIGSLFEFIGTVQV------AGLERR------VAARAHRNVDGLDMALYENVLRVRRAFL 79
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BLAST of mRNA_H-canaliculatus_F_contig11722.1531.1 vs. uniprot
Match: A0A485LP17_9STRA (Aste57867_23900 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LP17_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.320e-11
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:    1 LESYDAAADAAVVEYKGHQLGIDTSLLTDFQFRIASLYEFIGEIEARRKGESAGGEERNKRKTLLKARVCRNVDGLDTHLFEKALEVRRAFL 276
            L++YDA    A + ++   + + T LL +F F I S+Y+FIGE  A            ++ K  L+ARV RNVDGLD  +F  AL++RR F+
Sbjct:   29 LDAYDANKSLAALSFQNATIVVSTELLVNFDFMIGSMYQFIGETYA------------HEGKLQLRARVGRNVDGLDIQMFTDALKLRRDFI 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11722.1531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4P9WP25_9FUNG6.630e-1546.15Telomere-capping, CST complex subunit-domain-conta... [more]
D8RL68_SELML2.240e-1442.86Uncharacterized protein (Fragment) n=3 Tax=Selagin... [more]
A0A433PWY1_9FUNG8.860e-1445.05Telomere-capping, CST complex subunit-domain-conta... [more]
D7G0N6_ECTSI9.650e-1477.78Ubiquitin-like protein ATG12 n=1 Tax=Ectocarpus si... [more]
W4H842_9STRA1.020e-1344.57Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024UV78_9STRA2.330e-1241.30Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1S8W7W3_9FUNG4.250e-1241.30Uncharacterized protein n=1 Tax=Batrachochytrium s... [more]
A0A835UYM1_VANPL5.770e-1239.56Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A835ZB80_9STRA1.040e-1143.82Telomere-capping, CST complex subunit-domain-conta... [more]
A0A485LP17_9STRA1.320e-1139.13Aste57867_23900 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11722contigH-canaliculatus_F_contig11722:947..1678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue9.5e-11
Seed eggNOG ortholog2880.D7G0N6
Preferred nameATG12
KEGG koko:K08336
KEGG Pathwayko04068,ko04136,ko04138,ko04140,ko04621,ko04622,map04068,map04136,map04138,map04140,map04621,map04622
GOsGO:0000045,GO:0000272,GO:0000407,GO:0000422,GO:0002165,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005776,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0006073,GO:0006091,GO:0006112,GO:0006464,GO:0006497,GO:0006501,GO:0006807,GO:0006914,GO:0006950,GO:0006996,GO:0007005,GO:0007033,GO:0007154,GO:0007275,GO:0007552,GO:0007568,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009251,GO:0009267,GO:0009605,GO:0009653,GO:0009791,GO:0009886,GO:0009987,GO:0009991,GO:0010259,GO:0010623,GO:0012501,GO:0012506,GO:0015980,GO:0016020,GO:0016043,GO:0016052,GO:0016236,GO:0016237,GO:0016740,GO:0018410,GO:0019538,GO:0019776,GO:0022411,GO:0022607,GO:0030139,GO:0030154,GO:0030234,GO:0030659,GO:0030666,GO:0030670,GO:0031090,GO:0031386,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032258,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034045,GO:0034274,GO:0034613,GO:0034645,GO:0034727,GO:0035069,GO:0035096,GO:0036211,GO:0042157,GO:0042158,GO:0042594,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043687,GO:0044042,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044275,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0044805,GO:0045335,GO:0048468,GO:0048707,GO:0048856,GO:0048869,GO:0050790,GO:0050896,GO:0051179,GO:0051641,GO:0051716,GO:0055114,GO:0060033,GO:0061723,GO:0061726,GO:0061912,GO:0061919,GO:0065007,GO:0065009,GO:0070727,GO:0070925,GO:0071496,GO:0071704,GO:0071840,GO:0072665,GO:0097708,GO:0098588,GO:0098772,GO:0098805,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902494,GO:1903008,GO:1905037,GO:1990234
EggNOG free text desc.autophagosome assembly
EggNOG OGsKOG3439@1,KOG3439@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAutophagy-related protein 12
Ec32 orthologEc-14_001670.1
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928867.7670183-CDS-H-canaliculatus_F_contig11722:946..10291622928867.7670183-CDS-H-canaliculatus_F_contig11722:946..1029Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11722 947..1029 -
1696845595.1091921-CDS-H-canaliculatus_F_contig11722:946..10291696845595.1091921-CDS-H-canaliculatus_F_contig11722:946..1029Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11722 947..1029 -
1622928867.7790194-CDS-H-canaliculatus_F_contig11722:1485..16781622928867.7790194-CDS-H-canaliculatus_F_contig11722:1485..1678Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11722 1486..1678 -
1696845595.1211717-CDS-H-canaliculatus_F_contig11722:1485..16781696845595.1211717-CDS-H-canaliculatus_F_contig11722:1485..1678Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11722 1486..1678 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11722.1531.1prot_H-canaliculatus_F_contig11722.1531.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11722 947..1678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11722.1531.1

>prot_H-canaliculatus_F_contig11722.1531.1 ID=prot_H-canaliculatus_F_contig11722.1531.1|Name=mRNA_H-canaliculatus_F_contig11722.1531.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=92bp
LESYDAAADAAVVEYKGHQLGIDTSLLTDFQFRIASLYEFIGEIEARRKG
ESAGGEERNKRKTLLKARVCRNVDGLDTHLFEKALEVRRAFL
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mRNA from alignment at H-canaliculatus_F_contig11722:947..1678-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11722.1531.1 ID=mRNA_H-canaliculatus_F_contig11722.1531.1|Name=mRNA_H-canaliculatus_F_contig11722.1531.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=732bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11722:947..1678- (Hapterophycus canaliculatus Oshoro5f female)
CTCGAGAGCTACGACGCGGCGGCGGACGCGGCCGTTGTCGAATACAAGGG
CCATCAACTCGGTATCGACACGTCCTTGCTAACGGACTTCCAGTTCAGGA
TCGCCTCGCTCTACGAGTTCATCGGCGAGATCGAGGCAAGAAGAAAAGGC
GAATCCGCGGGAGGGGAGGAGAGGAACAAACGAAAAACTCTATGTTCGCC
CATGAGGCATAGCAGTCCGTCCGATTATGTTGGCGTGCTTGGCATTGTGA
ACTACGTCTCGATCGATCGGAATAGCAGGGCATACAACCCAGGGGCCACG
TCCCCCCCGCGAAGGAATCGCTTGTAAAGAAGGTGGTTCAACGACTTGCG
CTCTGAGCCAAACCGACTTGTGCTCTGAGCCAAACTTCCCTTTCCCCCGC
GATATGCACAACGCGGCGTGAGATAAGGGGAAACGGGGTTACCTTTGATC
ACAAGGGAGAGCACTCAATGGTCGGGGTTGGCTCCGCTTCGAACACTCCC
GGTGCCGGCGCGCTTGCAACAAGTGTCTGACGGTCTCGTAGCAATCTTCC
AATCTCCCGCAAACCTTGAGTACCACCGCAAACCTTGAGTACCACCCCCG
ACCGCTCTACAACACCGTCAAATACAGGAGGGGCCAAGGGGAAAGAGAGT
AAAGGCCCGTGTGTGCCGCAACGTGGACGGCCTCGACACGCACCTGTTTG
AGAAAGCGCTCGAGGTGCGCCGCGCTTTTCTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11722:947..1678-

>mRNA_H-canaliculatus_F_contig11722.1531.1 ID=mRNA_H-canaliculatus_F_contig11722.1531.1|Name=mRNA_H-canaliculatus_F_contig11722.1531.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=552bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11722:947..1678- (Hapterophycus canaliculatus Oshoro5f female)
CTCGAGAGCTACGACGCGGCGGCGGACGCGGCCGTTGTCGAATACAAGGG
CCATCAACTCGGTATCGACACGTCCTTGCTAACGGACTTCCAGTTCAGGA
TCGCCTCGCTCTACGAGTTCATCGGCGAGATCGAGGCAAGAAGAAAAGGC
GAATCCGCGGGAGGGGAGGAGAGGAACAAACGAAAAACTCTATCTCGAGA
GCTACGACGCGGCGGCGGACGCGGCCGTTGTCGAATACAAGGGCCATCAA
CTCGGTATCGACACGTCCTTGCTAACGGACTTCCAGTTCAGGATCGCCTC
GCTCTACGAGTTCATCGGCGAGATCGAGGCAAGAAGAAAAGGCGAATCCG
CGGGAGGGGAGGAGAGGAACAAACGAAAAACTCTATTAAAGGCCCGTGTG
TGCCGCAACGTGGACGGCCTCGACACGCACCTGTTTGAGAAAGCGCTCGA
GGTGCGCCGCGCTTTTCTCTAAAGGCCCGTGTGTGCCGCAACGTGGACGG
CCTCGACACGCACCTGTTTGAGAAAGCGCTCGAGGTGCGCCGCGCTTTTC
TC
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