mRNA_H-canaliculatus_F_contig10126.153.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10126.153.1
Unique NamemRNA_H-canaliculatus_F_contig10126.153.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10126.153.1 vs. uniprot
Match: A0A6H5JKQ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ4_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 6.530e-69
Identity = 112/165 (67.88%), Postives = 130/165 (78.79%), Query Frame = 1 
Query:  871 NCPYLELWPDLFRRGRFPGGVPSEPNEETLTVVLEAFDSLGREEMFASYVDSITKRVKAAPCEQNGHWSPQFCHCSLDLTAPVYHIVGWSNMTDAAAEAIVPATYSRRRGLEIAKFLDDRMKNNHERHGKKTFARGSTTEAYSPKMLQAVHEAYARDYELFSQYW 1365
            NCPYLELWPDLF R RFP GVP+ P  +TL +V EAF S GR+ MFA YV+ IT+RVK  PC QN HWSPQ+CHCSLD+TAPV+ IVGW+NMT+AA+ AIVP   S  RGLEI +FL DRM  NHERHGKKT A   + EAY+ + LQAVHEAYA+DY+LFSQYW
Sbjct:  203 NCPYLELWPDLFDRERFPDGVPTRPGVDTLAIVWEAFTSRGRDSMFAPYVEVITRRVKQDPCGQNKHWSPQYCHCSLDVTAPVFRIVGWANMTEAASAAIVPFASSSARGLEIKEFLVDRMDTNHERHGKKTSAGSRSQEAYTAEALQAVHEAYAKDYKLFSQYW 367
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BLAST of mRNA_H-canaliculatus_F_contig10126.153.1 vs. uniprot
Match: D8LBQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBQ5_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 4.670e-49
Identity = 83/121 (68.60%), Postives = 96/121 (79.34%), Query Frame = 1 
Query: 1003 MFASYVDSITKRVKAAPCEQNGHWSPQFCHCSLDLTAPVYHIVGWSNMTDAAAEAIVPATYSRRRGLEIAKFLDDRMKNNHERHGKKTFARGSTTEAYSPKMLQAVHEAYARDYELFSQYW 1365
            MFA YVD IT+R+K  PC QN HWSPQ+CHCSLD+TAPV+ IVGW+NMT+ A+ AIVP   S  RGLEI +FL DRM  NHERHGKKT A   + EAY+ + LQAVHEAYA+DYELFSQYW
Sbjct:    1 MFALYVDVITRRIKQDPCGQNKHWSPQYCHCSLDVTAPVFRIVGWANMTEVASAAIVPFASSPARGLEIKEFLVDRMDTNHERHGKKTSAGSRSQEAYTTEALQAVHEAYAKDYELFSQYW 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10126.153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKQ4_9PHAE6.530e-6967.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBQ5_ECTSI4.670e-4968.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10126contigH-canaliculatus_F_contig10126:509..5160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionprobable Sulfotransferase pseudogene
Ec32 orthologEc-27_003110.1
Hectar predicted targeting categoryother localisation
Exons4
Model size2374
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10126.153.1prot_H-canaliculatus_F_contig10126.153.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10126 2581..4157 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928641.933068-UTR-H-canaliculatus_F_contig10126:508..14461622928641.933068-UTR-H-canaliculatus_F_contig10126:508..1446Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10126 509..1446 +
1696845509.1973057-UTR-H-canaliculatus_F_contig10126:508..14461696845509.1973057-UTR-H-canaliculatus_F_contig10126:508..1446Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10126 509..1446 +
1622928641.9480824-UTR-H-canaliculatus_F_contig10126:2516..25801622928641.9480824-UTR-H-canaliculatus_F_contig10126:2516..2580Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10126 2517..2580 +
1696845509.2144349-UTR-H-canaliculatus_F_contig10126:2516..25801696845509.2144349-UTR-H-canaliculatus_F_contig10126:2516..2580Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10126 2517..2580 +
1622928642.0150042-UTR-H-canaliculatus_F_contig10126:4157..51601622928642.0150042-UTR-H-canaliculatus_F_contig10126:4157..5160Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10126 4158..5160 +
1696845509.2558017-UTR-H-canaliculatus_F_contig10126:4157..51601696845509.2558017-UTR-H-canaliculatus_F_contig10126:4157..5160Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10126 4158..5160 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928641.967683-CDS-H-canaliculatus_F_contig10126:2580..26451622928641.967683-CDS-H-canaliculatus_F_contig10126:2580..2645Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10126 2581..2645 +
1696845509.2242615-CDS-H-canaliculatus_F_contig10126:2580..26451696845509.2242615-CDS-H-canaliculatus_F_contig10126:2580..2645Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10126 2581..2645 +
1622928641.9840004-CDS-H-canaliculatus_F_contig10126:3248..34711622928641.9840004-CDS-H-canaliculatus_F_contig10126:3248..3471Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10126 3249..3471 +
1696845509.2329736-CDS-H-canaliculatus_F_contig10126:3248..34711696845509.2329736-CDS-H-canaliculatus_F_contig10126:3248..3471Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10126 3249..3471 +
1622928642.0005426-CDS-H-canaliculatus_F_contig10126:4076..41571622928642.0005426-CDS-H-canaliculatus_F_contig10126:4076..4157Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10126 4077..4157 +
1696845509.2450638-CDS-H-canaliculatus_F_contig10126:4076..41571696845509.2450638-CDS-H-canaliculatus_F_contig10126:4076..4157Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10126 4077..4157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10126.153.1

>prot_H-canaliculatus_F_contig10126.153.1 ID=prot_H-canaliculatus_F_contig10126.153.1|Name=mRNA_H-canaliculatus_F_contig10126.153.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=123bp
MFASYVDSITKRVKAAPCEQNGHWSPQFCHCSLDLTAPVYHIVGWSNMTD
AAAEAIVPATYSRRRGLEIAKFLDDRMKNNHERHGKKTFARGSTTEAYSP
KMLQAVHEAYARDYELFSQYWG*
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mRNA from alignment at H-canaliculatus_F_contig10126:509..5160+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10126.153.1 ID=mRNA_H-canaliculatus_F_contig10126.153.1|Name=mRNA_H-canaliculatus_F_contig10126.153.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4652bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10126:509..5160+ (Hapterophycus canaliculatus Oshoro5f female)
ATCAGCTAGCTTCGCAACACATTTACCCGGCGCATTCTGTTTTACACTCG
AGGGCAGGCTACTGCAACACAACAGTTTGCTCTTCGCAAGCGCAGCAGCG
ATGACCACACGCGTCCGCGTATTTAAGTAATCTTGAGGAAAGGGACTCGA
GGAGCACAAGCCCGTGGCGTGACGGCGCGCGTGTAGGACCCTTTCCGTGG
AGCTGTACATCTCGCGGTGACCTTCCTACTTTTCCTTCTGGCAAGCTTAT
TCTGTACCTGGCTTGCGATCGCTGATTGGGTTACCCGTTGCGACATAAGT
ATGTTGGAAATAAAGGTAGGAAGGCAAAACTGAAGCACATCGACCGCTCT
GTAGCGTGCGGAAAGGGTAGTCGCGCCGATGTCGAGAACTTTGAAATTAA
AGCGTTCCTAGTGATAAAGGTGGCGGCGACGACGATGGCGACGATCAACC
AACGGTGATGGTAGTGAACTTGGACATGGTCTCATGTTAGGTTTATCAGG
ATTTCCCTGCACACTTTCAAACATGGCCTCATTTTGCAATTGAACAACCG
AACGCGCCGAACCCAACGACCGATAGATTAGGGGCGAGTCTTCTTGCCTT
GGAAAAATCTAAATCGATACCGCAAAGCAACGCCGCTTCCTGCAACCATT
TTCCGATAGGGTCGAACTCCCAAGAAACGGACACAATATACGCAAAACGG
GCGTGCCCTGCCCGCGTCCTGTATGTACGTCGTCAAACCAAACGCCCGAC
TCACCTTAAGCGCGAGCATCGAACAATCGTTTCCTTTTACCCCCGCCTTT
TGCCTTTGGTTTCGGATAAATGCTTGCTATCGACATCTCGGGCGTATTCA
CCAACTAACCAACAAACAGGAACTGCCCGTATTTGGAGCTGTGGCCCGAC
CTGTTTCGACGTGGACGCTTTCCGGGTGGGGTTCCCAGGTGAGGCGTCGG
AGGTGGGATCAACCAACCAAGCGAGGTGGCGGATCATACACATATCTGCG
CTGTCCTCGTTTTTCCTTTCCTGAATCTAAATGTTTTGGCCGGTCTGCCT
ACACGCGTCAGGTACTCTGATCAAAATTGAACCAGTTCTTCGTTTGGCGA
TTGCCCATGGGGGGGGAAAGAGAGCAGAGCGCGTGCTAAGTATGTGCTGG
TAAAGGCAGTGCAAGGATCTTTTGTTGCTAGATCTGAAGCAGTGTTTTGA
TTTTCGTCACGAGGGATCAATTAAAAGGCTCTCATAGGTGGTATTGCTCT
CTATCTTCCCCACACACGCCGAGAAACATCAAATCGGAGAAACGCCTTCG
ATCAAGTGTGAAGAAATGGATCCGGTATCTACTCAAAATAAATCGGCTGC
AAGTGCGTGCGTGCGTGCGTGTAGCGCACGTGTTGTAGCTTGTTCGGACG
AGCGACGCGTGTTCCCGCCGAATGGTGATTGAAACATTTGGTTTGATTGT
GCGGCAGGCGAGGAAGTGGGCCGCTCAAATTTCAGGTGTTCTTTCCTTTA
GAAGATAACTCTGAACAGTTGAGGACGACTGTAATGCCTTTGAACTTTCG
ACGGGGAGGGCTCAATACGAGCAGCTAGGACAAAGGCAACAGATCGTTGA
AAATTGTGGCCCACGGCGGTCTTGAGCTGATGAAGCGTTGCACGGCGAGC
GAGGTTGACCTCTACTCAGATGCTTCCTGTCGCTGACGTAAGGCGAGGCT
GATTGCGGAGGAGACGAGACGAGTGAACGGCAGCTCCGTGAGATGATGCC
GAACGCACCCATCCCCGGGGCAGAAACGAGGAAGAAAGCGCGAGAGACGA
TGACACCGGAGGGCACAACCTGAAATACGTCCGCGCTTTCGTTCGCAAAC
ACGTCCTTGCCCGCGTAAGATAAACGAAGTTTTTACTCCGTCTACTGGCT
GTGTTTTGGTTGTTAAGTGTTTCTGCTGCGTTTCACGTTAACCCGCAAGT
GACTTCATTCGAGCACCCCAAATGCGCATGAATTGCACGTCAACCGCACG
TGCCACAGCGAACCGAACGAGGAGACCCTCACTGTGGTCTTGGAAGCTTT
TGACAGCCTAGGCAGGGAGGAGATGTTCGCCTCGTACGTTGATTCCATCA
CAAAGAGGGTCAAGGCCGCCCCTTGCGAGCAGAACGGGTGAGTGAGTCGA
GCTTAGAATTCGACCAAAACATTTTCCTGTCTCAAATTTCGTCATGAGCG
AAGAAGGAGCTGTTTCATGCCCCTGGTCCCAACGCGATGGGGTGGCGATC
GCGGTGTGGGCAATTTATGACGCTTTGCTCACCCCTGCTACTCTCACACA
CCTCTCGGAGGGGTGACACTCCTACCTCACAGTGGCTGTTCTAAACTCGG
CGAGATCAATCGAAAAGCGAAGCTTGCACATTGCATTCTTGCAAAGAAAA
TAAAAGCGCACATGTGAACCGATCGCCGAGGTCAGACCACACTGAGTGGC
ATCTCTGAAGTTGCTGATGACTCCCTCTAGAGCACCCAGACACCATACAA
AGCTTCCTCAAGCCAGGAACAAAAAAACCAACGTCAACGAAGTAACAATG
ACGACGACGGCAACAGCAGCAGATCAGTAGCAGCAACAACACCAGCAGCA
ACAACACCAACGGCAACACCAACACCATCACTACCAACAACAGCAACAAC
AGCAACAACAGCAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAAGAACAACAACAACAACAACAACAACAACAAACAGGCATTGGTCA
CCGCAGTTCTGCCACTGTTCGTTGGACTTGACGGCTCCGGTCTACCACAT
CGTGGGATGGAGCAACATGACCGACGCGGCGGCGGAGGCCATCGTTCCCG
CAACCTACTCTCGCCGCCGTGGCCTAGAGATCGCCAAATTTCTCGACGAC
AGGATGAAGAACAACCACGAAAGGCACGGGAAAAAGACCTTCGCGAGGGG
TTCAACGACAGAGGTAGGGAGCACGGGTACCACGCTTGCATGCGCTGTTC
CCTAAAGATCTAACATGTACCTGGTAGTCTTTGTACATGTTGTATCGTAT
AATACTTACTACCGGGTAAATATCTTATGTCTCTGTTTTCGGGCTGCCCG
AGTTGTGCGGTTTTGTGTTCCGTGATGCCATGCAAACCTGTGCCATGCCA
TGCCGTGTCGTCTCGCAATAGCGCGTCTTCGTTTCTCGCCAACGATACGT
GCAGTGCCGCCGACGACGCGCTGATCAATCCGGTCGCGTCCTTCTGGAAT
TGTGCATTTTGCTTTAGTACGTGCTAGCGTCGAGGGGGGGGGGATGGTCT
TCGAGCGTTTGTTGAAGGGCCCAGCCGCACAGCCATTTTCTCCCGAGGAA
CAAAATTCATCCCGTGGTACATCCCGCACATGTGTTGCTGTTGAATTCTG
ATGCCATGTTCCCTTTCTCTTGCTTTGTCGGCGTCTTTTGTTTATGCCGA
TTCACATAAACCTTTCCCCCCCTTTTTTCTGCCGCGTTTGCACCTATCCG
CCTTGCCATTTGCTATGATCCGATACGACACACCACTGCTCAATAAAAAC
GGCCACACGTCGAACCAGGCATACTCGCCGAAAATGCTCCAGGCGGTTCA
TGAGGCCTATGCCAGAGACTACGAGCTTTTTTCCCAGTACTGGGGGTGAT
TGCGAAAACTGAAGTCAGGTGGTAAGGTACACTGCTCTGTGTGATGCGGC
AGCCTCTTCTTGCCTCATGGCTTCGCCTGAAAACAACGCAGAAGGGTGTT
CTCTTTGTTAGAGCTTGTTCCGGCCGTTTGCTCAGGAGGGATTGTCTTTC
GACGATGCCGTAGAAATAGAGGTTACGCACGGGTACCATAAACACATTCG
CAAAGAACGTGTTAGACGCTTTCTGAGCTGTTGTTCCTCAATTTGTATCT
TTATCGAAAAATTGACTTGTCTTGTTCGCCTGGGTCTTTGCGATGAACGT
GGTTCGTGAGATGGATTTTTGGGTGTTGCGGTGACTGTCGTGCCATGGAA
CCTCTTTCAGCTTGTTGTAAGAAGAGTTTTTCAACGGAGAACCTACCTTT
GCAGAACCAACAGAACGCGACATTGCATACCTGATGCGAATGGGTATCAC
GGAAGCATTGTAGACGATACTCTCCCTGTACTGGATGTTTCCTTGCAATA
CACACACAGAAGGCACTGCAATAGATGTTTTTCCAATTATACAATATGAC
ATGTCTTGGTTGTGCGTATCAGGGGAGGGAACGGGTTTTGTTCACGTTGC
GAGAGAGTGTTTCACCAGTAGAAACAAACAGCAACTGGGCAGATTTATTG
AACAGGCGCAACAGCCTTTGGACCTCCAAAACCAAACGCCTTGGAAAGTG
CGGCAGCGAGCAAGGAAGGAATAAACGATTGCTCGCGTGCAGCCGCGAAG
GCACAAAGAGGTTGTGTGTATCACGCGCGAAAACGTTGCTTTGAAACAGG
AGGTACGTTTCTCTCCGATGCCCCCTCTGTTCTAGATATTGTTTGACTGG
TGTTCGTTTCGGCAGTTTTTATAAAACAAGTCAACAACACCGAAGGAATA
CCCACCTGAGACACTGTCTATCTCAAGGGGCTTTTGTTAATTCCATTCAG
TGAGGGTTCCATTCGTGTGGCAGGATGAAACTATGTAGCGGTAGGCCAGT
TG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10126:509..5160+

>mRNA_H-canaliculatus_F_contig10126.153.1 ID=mRNA_H-canaliculatus_F_contig10126.153.1|Name=mRNA_H-canaliculatus_F_contig10126.153.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=738bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10126:509..5160+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTCGCCTCGTACGTTGATTCCATCACAAAGAGGGTCAAGGCCGCCCC
TTGCGAGCAGAACGGATGTTCGCCTCGTACGTTGATTCCATCACAAAGAG
GGTCAAGGCCGCCCCTTGCGAGCAGAACGGGCATTGGTCACCGCAGTTCT
GCCACTGTTCGTTGGACTTGACGGCTCCGGTCTACCACATCGTGGGATGG
AGCAACATGACCGACGCGGCGGCGGAGGCCATCGTTCCCGCAACCTACTC
TCGCCGCCGTGGCCTAGAGATCGCCAAATTTCTCGACGACAGGATGAAGA
ACAACCACGAAAGGCACGGGAAAAAGACCTTCGCGAGGGGTTCAACGACA
GAGGCATTGGTCACCGCAGTTCTGCCACTGTTCGTTGGACTTGACGGCTC
CGGTCTACCACATCGTGGGATGGAGCAACATGACCGACGCGGCGGCGGAG
GCCATCGTTCCCGCAACCTACTCTCGCCGCCGTGGCCTAGAGATCGCCAA
ATTTCTCGACGACAGGATGAAGAACAACCACGAAAGGCACGGGAAAAAGA
CCTTCGCGAGGGGTTCAACGACAGAGGCATACTCGCCGAAAATGCTCCAG
GCGGTTCATGAGGCCTATGCCAGAGACTACGAGCTTTTTTCCCAGTACTG
GGGGTGAGCATACTCGCCGAAAATGCTCCAGGCGGTTCATGAGGCCTATG
CCAGAGACTACGAGCTTTTTTCCCAGTACTGGGGGTGA
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