mRNA_H-canaliculatus_F_contig11710.1526.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11710.1526.1
Unique NamemRNA_H-canaliculatus_F_contig11710.1526.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11710.1526.1 vs. uniprot
Match: D7FPW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPW2_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 3.310e-19
Identity = 56/98 (57.14%), Postives = 69/98 (70.41%), Query Frame = 1 
Query:   13 SSEVSQLSEMSAELSSSKESNGRRRSEVADTAVKIGRLEKSLEEQVALADRHREDLAALSAALEKRVQKTQDLDLKLGHIARQTSEVHFPRLAAVSKG 306
            SSEVSQL EM+AELSSSKE+N R R E++D  V IG  EK LE QV++ +RHR   AA  AA+EKRVQ   DL LK+ HIA+Q +EVH  R+   + G
Sbjct:    3 SSEVSQLCEMNAELSSSKENNDRTRQEISDIRVMIGLQEKRLESQVSVTNRHRSGKAAAMAAVEKRVQGLFDLCLKVDHIAKQHNEVHQQRMKRAAAG 100
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BLAST of mRNA_H-canaliculatus_F_contig11710.1526.1 vs. uniprot
Match: A0A6H5L7J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7J4_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.420e-17
Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = 1 
Query:   13 SSEVSQLSEMSAELSSSKESNGRRRSEVADTAVKIGRLEKSLEEQVALADRHREDLAALSAALEKRVQKTQDLDLKLGHIARQTSE 270
            SSEVSQL EM+AELSS KE+N R R E++D  V IG  EK LE QV+  +RHR   AA +AA+EKR+Q+  DL LK+ HIA+Q +E
Sbjct:    3 SSEVSQLCEMNAELSSCKENNDRTRQEISDIRVMIGLQEKRLESQVSATNRHRSGKAAATAAVEKRMQRLFDLRLKVDHIAKQHNE 88
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11710.1526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPW2_ECTSI3.310e-1957.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7J4_9PHAE3.420e-1758.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11710contigH-canaliculatus_F_contig11710:2399..3474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928866.5142696-CDS-H-canaliculatus_F_contig11710:2398..26171622928866.5142696-CDS-H-canaliculatus_F_contig11710:2398..2617Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11710 2399..2617 +
1696845594.900966-CDS-H-canaliculatus_F_contig11710:2398..26171696845594.900966-CDS-H-canaliculatus_F_contig11710:2398..2617Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11710 2399..2617 +
1622928866.5306015-CDS-H-canaliculatus_F_contig11710:3387..34741622928866.5306015-CDS-H-canaliculatus_F_contig11710:3387..3474Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11710 3388..3474 +
1696845594.909162-CDS-H-canaliculatus_F_contig11710:3387..34741696845594.909162-CDS-H-canaliculatus_F_contig11710:3387..3474Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11710 3388..3474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11710.1526.1prot_H-canaliculatus_F_contig11710.1526.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11710 2399..3474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11710.1526.1

>prot_H-canaliculatus_F_contig11710.1526.1 ID=prot_H-canaliculatus_F_contig11710.1526.1|Name=mRNA_H-canaliculatus_F_contig11710.1526.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=102bp
MPPSSSEVSQLSEMSAELSSSKESNGRRRSEVADTAVKIGRLEKSLEEQV
ALADRHREDLAALSAALEKRVQKTQDLDLKLGHIARQTSEVHFPRLAAVS
KG
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mRNA from alignment at H-canaliculatus_F_contig11710:2399..3474+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11710.1526.1 ID=mRNA_H-canaliculatus_F_contig11710.1526.1|Name=mRNA_H-canaliculatus_F_contig11710.1526.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1076bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11710:2399..3474+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCGCCGTCTTCGTCAGAGGTCTCGCAGCTGAGCGAGATGAGCGCGGA
GCTGTCCTCCTCGAAGGAAAGCAACGGCCGCCGGCGTTCGGAGGTGGCAG
ACACGGCAGTCAAGATCGGACGCCTGGAGAAGAGTCTCGAGGAGCAGGTG
GCCCTCGCCGACCGCCACCGTGAAGACCTGGCGGCTCTGTCGGCGGCCTT
GGAGAAAAGGGTCCAGAAGGTGGGTTAGCTCGCGGCGGGGAGAGGGAGGG
AGGGGAAGGAGGGAGGGGGAAAGGGGCGGACAGGCGAATCTCATGGATTA
GCCGTGGAGGGGTCGACAAGATGAAGGGGGCTTGAGGGAAGAGCGTTGAG
GTGAGGGGATGGTGGCGGAAGAATCTGAGCGCACGGTCAAGTGTCGTAGC
GACGAGTTCACGAGGGGGCACCCGCGATGACTCGGCAATGAAGAAGAGGA
GGAGGAGGGGGAGGAGGAGGAGGAGGAGTGGGGAGTGAATTGAATGGCCG
CTGAGCGATGAAGAGCGGTGTGAAAACATAGTTGGGGGAGTGGCATGCCG
AGTGAGAAAAAGCAGAGGATGTTTTCGGCACACACGCCACGTTTGTCGGG
CGGAAGTCGATCGTGCACGGTACCCTGCCTACGGACCTGAGAAGAGAACT
CCCGTGTGTGCATGCGTGGTCTTGTATTGCGTCACGCATCCCTCTTGAGA
AGAAGAACCTCGAGAGAGGAAAAATTATAATTGTGGATTTCTAAACGTGG
GCCAGGCACTACGGGAACCCCAGTAGGCAAAAAGTGAAGCAATCAGGGAA
ACTGTTGAGTGCAGACAACGTCGTCGTCGTTCTTGGCGTTGCGCTGTCGT
CGAACGTCCCTGTTGGTAGCGACGGCGCGTTGATCCCGGTCTTGGATCGG
CCACAGGCTCGGCCGCACGTCACACGCGGTGAGGCTTGTCATCAGCTTTC
CGAACCGAATCTGCTTTTTTGGCCCTCTCGGATGAACAGACGCAAGACTT
GGATCTCAAGCTGGGCCACATTGCGAGGCAAACGAGCGAGGTCCACTTCC
CGCGCCTGGCGGCGGTAAGCAAAGGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11710:2399..3474+

>mRNA_H-canaliculatus_F_contig11710.1526.1 ID=mRNA_H-canaliculatus_F_contig11710.1526.1|Name=mRNA_H-canaliculatus_F_contig11710.1526.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=612bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11710:2399..3474+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCGCCGTCTTCGTCAGAGGTCTCGCAGCTGAGCGAGATGAGCGCGGA
GCTGTCCTCCTCGAAGGAAAGCAACGGCCGCCGGCGTTCGGAGGTGGCAG
ACACGGCAGTCAAGATCGGACGCCTGGAGAAGAGTCTCGAGGAGCAGGTG
GCCCTCGCCGACCGCCACCGTGAAGACCTGGCGGCTCTGTCGGCGGCCTT
GGAGAAAAGGGTCCAGAAGATGCCGCCGTCTTCGTCAGAGGTCTCGCAGC
TGAGCGAGATGAGCGCGGAGCTGTCCTCCTCGAAGGAAAGCAACGGCCGC
CGGCGTTCGGAGGTGGCAGACACGGCAGTCAAGATCGGACGCCTGGAGAA
GAGTCTCGAGGAGCAGGTGGCCCTCGCCGACCGCCACCGTGAAGACCTGG
CGGCTCTGTCGGCGGCCTTGGAGAAAAGGGTCCAGAAGACGCAAGACTTG
GATCTCAAGCTGGGCCACATTGCGAGGCAAACGAGCGAGGTCCACTTCCC
GCGCCTGGCGGCGGTAAGCAAAGGTACGCAAGACTTGGATCTCAAGCTGG
GCCACATTGCGAGGCAAACGAGCGAGGTCCACTTCCCGCGCCTGGCGGCG
GTAAGCAAAGGT
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