mRNA_H-canaliculatus_F_contig10123.152.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10123.152.1
Unique NamemRNA_H-canaliculatus_F_contig10123.152.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10123.152.1 vs. uniprot
Match: A0A6H5JX21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX21_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 9.410e-53
Identity = 96/161 (59.63%), Postives = 117/161 (72.67%), Query Frame = 1 
Query:    4 FERVLVGHGRQSRLDKRVSGGKGKLHRCTGAIYNGTEKTTLGCQVRARACKQKTKEWKVTEVELNHVNCTGQSSEKKQRICRRSVQAEAAALINSNGSMTALALARSLKSTQHVDIKERTANRMIREERGKEDAVIKGQYEVLQSYLSILGQDNGNVVDCE 486
             ER ++   RQ RLDKRVSGG+GKLHRCTGA+ NG  K T GC V ARACK     WKVTEV L+HV CTGQ+  KKQRI RR V+ EAAAL++SN S+T  ALA++LK+T  VDI ERTA RM  +  GK    I  +Y++LQSY  +LG+DNGNVV+C+
Sbjct:   43 IERCMISTSRQCRLDKRVSGGRGKLHRCTGAVING--KATSGCPVLARACKLHDGTWKVTEVVLDHVACTGQAGNKKQRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQSYCDLLGRDNGNVVECK 201
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BLAST of mRNA_H-canaliculatus_F_contig10123.152.1 vs. uniprot
Match: D7FZQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ7_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 1.850e-50
Identity = 89/157 (56.69%), Postives = 115/157 (73.25%), Query Frame = 1 
Query:   16 LVGHGRQSRLDKRVSGGKGKLHRCTGAIYNGTEKTTLGCQVRARACKQKTKEWKVTEVELNHVNCTGQSSEKKQRICRRSVQAEAAALINSNGSMTALALARSLKSTQHVDIKERTANRMIREERGKEDAVIKGQYEVLQSYLSILGQDNGNVVDCE 486
            ++   RQ RLDKRVSGG+GKLHRCTGAI NG  K T GC VRAR CKQ    WKVTEV L+HV CTGQ+  KKQRI RR V+ EAAAL+++N S+T  +L ++LK+T  VD+ ER+A+RM  +  GK    I  +Y++LQS   +LG+DNGN+V+C+
Sbjct:    1 MISQSRQCRLDKRVSGGRGKLHRCTGAIING--KATSGCPVRARGCKQTDGTWKVTEVVLDHVACTGQAGNKKQRINRRCVEGEAAALVSANHSITCPSLVKTLKATSGVDVSERSASRMRADILGKGKDAIAKEYQLLQSSCDLLGRDNGNIVECQ 155
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BLAST of mRNA_H-canaliculatus_F_contig10123.152.1 vs. uniprot
Match: A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 7.970e-49
Identity = 96/161 (59.63%), Postives = 117/161 (72.67%), Query Frame = 1 
Query:    4 FERVLVGHGRQSRLDKRVSGGKGKLHRCTGAIYNGTEKTTLGCQVRARACKQKTKEWKVTEVELNHVNCTGQSSEKKQRICRRSVQAEAAALINSNGSMTALALARSLKSTQHVDIKERTANRMIREERGKEDAVIKGQYEVLQSYLSILGQDNGNVVDCE 486
             ER ++   RQ RLDKRVSGG+GKLHRCTGA+ NG  K T GC V ARACK     WKVTEV L+HV CTGQ+  KKQRI RR V+ EAAAL++SN S+T  ALA++LK+T  VDI ERTA RM  +  GK    I  +Y++LQSY  +LG+DNGNVV+C+
Sbjct:   43 IERCMISTSRQCRLDKRVSGGRGKLHRCTGAVING--KATSGCPVLARACKLHDGTWKVTEVVLDHVACTGQAGNKKQRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQSYCDLLGRDNGNVVECK 201
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10123.152.1 vs. uniprot
Match: A0A6H5J5Y0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5Y0_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 7.130e-47
Identity = 88/155 (56.77%), Postives = 111/155 (71.61%), Query Frame = 1 
Query:    4 FERVLVGHGRQSRLDKRVSGGKGKLHRCTGAIYNGTEKTTLGCQVRARACKQKTKEWKVTEVELNHVNCTGQSSEKKQRICRRSVQAEAAALINSNGSMTALALARSLKSTQHVDIKERTANRMIREERGKEDAVIKGQYEVLQSYLSILGQDNG 468
            FER ++   RQ RLDKR+ GG+GKLHRCTGAI NG  K T GC V AR CKQ    WKVTEV L+HV CTGQ+S KKQRI RR V+ EAAAL+++N  +T  +L ++LK+T  VD+ ERTA+RM  +  GK    I  +Y++LQSY  +LG+DNG
Sbjct:  151 FERCMIAQSRQCRLDKRIIGGRGKLHRCTGAIVNG--KATSGCPVLARGCKQTDGTWKVTEVVLDHVACTGQASNKKQRINRRCVEREAAALVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQSYCDLLGRDNG 303
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10123.152.1 vs. uniprot
Match: A0A6H5KQC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQC0_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 7.220e-46
Identity = 86/156 (55.13%), Postives = 111/156 (71.15%), Query Frame = 1 
Query:   16 LVGHGRQSRLDKRVSGGKGKLHRCTGAIYNGTEKTTLGCQVRARACKQKTKEWKVTEVELNHVNCTGQSSEKKQRICRRSVQAEAAALINSNGSMTALALARSLKSTQHVDIKERTANRMIREERGKEDAVIKGQYEVLQSYLSILGQDNGNVVDC 483
            ++   RQ RLDKR SGG+ KLHRCTGAI NG  K T GC VRAR CKQ    WKVTE  L+HV CTGQ+  KKQ I RR V+ +AAAL+++N S+T  +L ++LK+T  VDI ERTA RM  +  GK +  I  +Y++LQ+Y  +LG+DNGN+V+C
Sbjct:    1 MISQSRQCRLDKRDSGGRSKLHRCTGAIING--KATSGCPVRARGCKQTDGTWKVTEAVLDHVACTGQAGNKKQGINRRCVEKQAAALVSANHSITCPSLVKTLKATSGVDISERTAGRMRVDILGKGNDAIAKEYQLLQNYCDLLGRDNGNIVEC 154
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10123.152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JX21_9PHAE9.410e-5359.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZQ7_ECTSI1.850e-5056.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4I0_9PHAE7.970e-4959.63SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J5Y0_9PHAE7.130e-4756.77Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KQC0_9PHAE7.220e-4655.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10123contigH-canaliculatus_F_contig10123:4518..5003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size486
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928641.88977-CDS-H-canaliculatus_F_contig10123:4517..50031622928641.88977-CDS-H-canaliculatus_F_contig10123:4517..5003Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10123 4518..5003 -
1696845509.188157-CDS-H-canaliculatus_F_contig10123:4517..50031696845509.188157-CDS-H-canaliculatus_F_contig10123:4517..5003Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10123 4518..5003 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10123.152.1prot_H-canaliculatus_F_contig10123.152.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10123 4518..5003 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10123.152.1

>prot_H-canaliculatus_F_contig10123.152.1 ID=prot_H-canaliculatus_F_contig10123.152.1|Name=mRNA_H-canaliculatus_F_contig10123.152.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=162bp
MFERVLVGHGRQSRLDKRVSGGKGKLHRCTGAIYNGTEKTTLGCQVRARA
CKQKTKEWKVTEVELNHVNCTGQSSEKKQRICRRSVQAEAAALINSNGSM
TALALARSLKSTQHVDIKERTANRMIREERGKEDAVIKGQYEVLQSYLSI
LGQDNGNVVDCE
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mRNA from alignment at H-canaliculatus_F_contig10123:4518..5003-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10123.152.1 ID=mRNA_H-canaliculatus_F_contig10123.152.1|Name=mRNA_H-canaliculatus_F_contig10123.152.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=486bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10123:4518..5003- (Hapterophycus canaliculatus Oshoro5f female)
ATGTTCGAGCGGGTGCTTGTGGGGCATGGACGGCAGTCTCGTTTAGATAA
AAGAGTCAGTGGCGGCAAGGGCAAGCTCCATCGTTGCACTGGAGCAATCT
ACAACGGCACGGAGAAGACGACGCTGGGCTGTCAAGTGCGCGCTCGTGCG
TGCAAGCAGAAAACTAAAGAGTGGAAAGTAACGGAAGTAGAGTTGAATCA
CGTCAACTGCACCGGGCAGTCGTCGGAAAAGAAGCAGCGGATTTGCCGGC
GGTCTGTGCAGGCAGAGGCGGCTGCGCTGATCAACTCCAACGGCTCCATG
ACAGCGCTGGCACTGGCGAGGTCACTGAAGTCCACGCAACATGTTGATAT
CAAGGAGCGCACGGCGAACCGCATGATCCGCGAAGAGCGGGGCAAAGAAG
ATGCGGTAATCAAGGGACAGTACGAAGTACTCCAGAGCTACCTGTCCATC
CTCGGGCAAGACAACGGCAACGTCGTCGATTGTGAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10123:4518..5003-

>mRNA_H-canaliculatus_F_contig10123.152.1 ID=mRNA_H-canaliculatus_F_contig10123.152.1|Name=mRNA_H-canaliculatus_F_contig10123.152.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=972bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10123:4518..5003- (Hapterophycus canaliculatus Oshoro5f female)
ATGTTCGAGCGGGTGCTTGTGGGGCATGGACGGCAGTCTCGTTTAGATAA
AAGAGTCAGTGGCGGCAAGGGCAAGCTCCATCGTTGCACTGGAGCAATCT
ACAACGGCACGGAGAAGACGACGCTGGGCTGTCAAGTGCGCGCTCGTGCG
TGCAAGCAGAAAACTAAAGAGTGGAAAGTAACGGAAGTAGAGTTGAATCA
CGTCAACTGCACCGGGCAGTCGTCGGAAAAGAAGCAGCGGATTTGCCGGC
GGTCTGTGCAGGCAGAGGCGGCTGCGCTGATCAACTCCAACGGCTCCATG
ACAGCGCTGGCACTGGCGAGGTCACTGAAGTCCACGCAACATGTTGATAT
CAAGGAGCGCACGGCGAACCGCATGATCCGCGAAGAGCGGGGCAAAGAAG
ATGCGGTAATCAAGGGACAGTACGAAGTACTCCAGAGCTACCTGTCCATC
CTCGGGCAAGACAACGGCAACGTCGTCGATTGTGAAATGTTCGAGCGGGT
GCTTGTGGGGCATGGACGGCAGTCTCGTTTAGATAAAAGAGTCAGTGGCG
GCAAGGGCAAGCTCCATCGTTGCACTGGAGCAATCTACAACGGCACGGAG
AAGACGACGCTGGGCTGTCAAGTGCGCGCTCGTGCGTGCAAGCAGAAAAC
TAAAGAGTGGAAAGTAACGGAAGTAGAGTTGAATCACGTCAACTGCACCG
GGCAGTCGTCGGAAAAGAAGCAGCGGATTTGCCGGCGGTCTGTGCAGGCA
GAGGCGGCTGCGCTGATCAACTCCAACGGCTCCATGACAGCGCTGGCACT
GGCGAGGTCACTGAAGTCCACGCAACATGTTGATATCAAGGAGCGCACGG
CGAACCGCATGATCCGCGAAGAGCGGGGCAAAGAAGATGCGGTAATCAAG
GGACAGTACGAAGTACTCCAGAGCTACCTGTCCATCCTCGGGCAAGACAA
CGGCAACGTCGTCGATTGTGAA
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