mRNA_H-canaliculatus_F_contig10120.150.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10120.150.1
Unique NamemRNA_H-canaliculatus_F_contig10120.150.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig10120.150.1 vs. uniprot
Match: D7FZL0_ECTSI (SPX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL0_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.090e-16
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 1
Query:   16 RINYIYLFDMDPRAVSSPLRVFNNVAAETVIYLANLLLYYK 138
            RINYIYLFDMDPRAVSSPL+VFNNVAAETV+YLANLLLYYK
Sbjct:  334 RINYIYLFDMDPRAVSSPLQVFNNVAAETVVYLANLLLYYK 374          
BLAST of mRNA_H-canaliculatus_F_contig10120.150.1 vs. uniprot
Match: A0A6H5KYB6_9PHAE (EXS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB6_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 5.030e-10
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = 1
Query:   43 MDPRAVSSPLRVFNNVAAETVIYLANLLLYYK 138
            MDPRAVSSPL+VFNNVAAETV+YLANLLLYYK
Sbjct:    1 MDPRAVSSPLQVFNNVAAETVVYLANLLLYYK 32          
BLAST of mRNA_H-canaliculatus_F_contig10120.150.1 vs. uniprot
Match: A0A7S1UZJ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UZJ6_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.830e-8
Identity = 24/41 (58.54%), Postives = 34/41 (82.93%), Query Frame = 1
Query:   16 RINYIYLFDMDPRAVSSPLRVFNNVAAETVIYLANLLLYYK 138
            RINYI+LFD+DPR V SP+ +FN+V  ET++++  +LLYYK
Sbjct:   64 RINYIFLFDLDPRTVDSPITIFNDVVDETLVFMFLMLLYYK 104          
BLAST of mRNA_H-canaliculatus_F_contig10120.150.1 vs. uniprot
Match: A0A835YP28_9STRA (EXS family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP28_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.050e-8
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = 1
Query:   16 RINYIYLFDMDPRAVSSPLRVFNNVAAETVIYLANLLLYYK 138
            RIN++YLF++DPR  S PL +FN+VA ETV++LA LL YYK
Sbjct:  483 RINFLYLFELDPRHQSPPLALFNDVAGETVVFLACLLAYYK 523          
BLAST of mRNA_H-canaliculatus_F_contig10120.150.1 vs. uniprot
Match: B8LC07_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LC07_THAPS)

HSP 1 Score: 54.3 bits (129), Expect = 2.720e-7
Identity = 22/41 (53.66%), Postives = 32/41 (78.05%), Query Frame = 1
Query:   16 RINYIYLFDMDPRAVSSPLRVFNNVAAETVIYLANLLLYYK 138
            RINYIYLF+ DPR V +P+ +FN+   ET ++L ++L+YYK
Sbjct:  454 RINYIYLFEFDPRNVDTPIDIFNDAVDETFVFLVSMLMYYK 494          
BLAST of mRNA_H-canaliculatus_F_contig10120.150.1 vs. uniprot
Match: A0A7S2KW14_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KW14_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.720e-7
Identity = 23/41 (56.10%), Postives = 32/41 (78.05%), Query Frame = 1
Query:   16 RINYIYLFDMDPRAVSSPLRVFNNVAAETVIYLANLLLYYK 138
            RINYIYLF+ DPR V +P+ +FN+   ET+++L  +LLYYK
Sbjct:   49 RINYIYLFEFDPRNVDTPIDIFNDAVDETLVFLICMLLYYK 89          
BLAST of mRNA_H-canaliculatus_F_contig10120.150.1 vs. uniprot
Match: A0A7S4RIS9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RIS9_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 9.540e-7
Identity = 22/41 (53.66%), Postives = 32/41 (78.05%), Query Frame = 1
Query:   16 RINYIYLFDMDPRAVSSPLRVFNNVAAETVIYLANLLLYYK 138
            RINYIYLFD +PR V +P+ ++N+   ET+++L  +LLYYK
Sbjct:  500 RINYIYLFDFNPRIVDTPITIYNDCVDETLVFLILMLLYYK 540          
BLAST of mRNA_H-canaliculatus_F_contig10120.150.1 vs. uniprot
Match: A0A3R7J8N4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J8N4_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 9.550e-7
Identity = 23/44 (52.27%), Postives = 34/44 (77.27%), Query Frame = 1
Query:    7 RSCRINYIYLFDMDPRAVSSPLRVFNNVAAETVIYLANLLLYYK 138
            R+ RINY Y+F++DPR V S  +VF++    T++YLAN+L+YYK
Sbjct:  569 RAARINYRYIFELDPRRVQSYPQVFSDATNMTIVYLANVLMYYK 612          
BLAST of mRNA_H-canaliculatus_F_contig10120.150.1 vs. uniprot
Match: A0A1Z5JJL2_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JJL2_FISSO)

HSP 1 Score: 52.0 bits (123), Expect = 1.790e-6
Identity = 21/41 (51.22%), Postives = 30/41 (73.17%), Query Frame = 1
Query:   16 RINYIYLFDMDPRAVSSPLRVFNNVAAETVIYLANLLLYYK 138
            R+NYIY+ D+DP  V SP+ +FN+   +T+ YL  +LLYYK
Sbjct:  451 RVNYIYIMDLDPHLVRSPIAIFNDSVDDTLFYLITMLLYYK 491          
BLAST of mRNA_H-canaliculatus_F_contig10120.150.1 vs. uniprot
Match: D0NYH6_PHYIT (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=D0NYH6_PHYIT)

HSP 1 Score: 51.6 bits (122), Expect = 2.440e-6
Identity = 23/44 (52.27%), Postives = 34/44 (77.27%), Query Frame = 1
Query:    7 RSCRINYIYLFDMDPRAVSSPLRVFNNVAAETVIYLANLLLYYK 138
            R+ RINY Y+F+++PR V S  +VF++    T++YLAN+LLYYK
Sbjct:  331 RAARINYHYIFELNPRRVQSYPQVFSDATNMTIVYLANVLLYYK 374          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10120.150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZL0_ECTSI1.090e-1695.12SPX domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KYB6_9PHAE5.030e-1093.75EXS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S1UZJ6_9STRA1.830e-858.54Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A835YP28_9STRA3.050e-863.41EXS family-domain-containing protein n=1 Tax=Tribo... [more]
B8LC07_THAPS2.720e-753.66Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7S2KW14_9STRA3.720e-756.10Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S4RIS9_9STRA9.540e-753.66Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A3R7J8N4_9STRA9.550e-752.27Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A1Z5JJL2_FISSO1.790e-651.22Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
D0NYH6_PHYIT2.440e-652.27Uncharacterized protein n=12 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10120contigH-canaliculatus_F_contig10120:4702..4839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue1.3e-13
Seed eggNOG ortholog2880.D7FZL0
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005886,GO:0012505,GO:0016020,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0071944
EggNOG free text desc.phosphate ion transport
EggNOG OGsCOG5409@1,KOG1162@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928641.7809296-CDS-H-canaliculatus_F_contig10120:4701..48391622928641.7809296-CDS-H-canaliculatus_F_contig10120:4701..4839Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10120 4702..4839 -
1696845509.1559181-CDS-H-canaliculatus_F_contig10120:4701..48391696845509.1559181-CDS-H-canaliculatus_F_contig10120:4701..4839Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10120 4702..4839 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10120.150.1prot_H-canaliculatus_F_contig10120.150.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10120 4702..4839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10120.150.1

>prot_H-canaliculatus_F_contig10120.150.1 ID=prot_H-canaliculatus_F_contig10120.150.1|Name=mRNA_H-canaliculatus_F_contig10120.150.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=46bp
MIRSCRINYIYLFDMDPRAVSSPLRVFNNVAAETVIYLANLLLYYK
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mRNA from alignment at H-canaliculatus_F_contig10120:4702..4839-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10120.150.1 ID=mRNA_H-canaliculatus_F_contig10120.150.1|Name=mRNA_H-canaliculatus_F_contig10120.150.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=138bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10120:4702..4839- (Hapterophycus canaliculatus Oshoro5f female)
ATGATTCGATCGTGCAGGATCAACTATATCTACCTCTTCGACATGGACCC GCGGGCGGTATCCTCCCCTCTGCGCGTATTCAACAACGTGGCGGCGGAGA CTGTCATTTACCTCGCGAACCTCCTCCTCTACTACAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10120:4702..4839-

>mRNA_H-canaliculatus_F_contig10120.150.1 ID=mRNA_H-canaliculatus_F_contig10120.150.1|Name=mRNA_H-canaliculatus_F_contig10120.150.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=276bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10120:4702..4839- (Hapterophycus canaliculatus Oshoro5f female)
ATGATTCGATCGTGCAGGATCAACTATATCTACCTCTTCGACATGGACCC
GCGGGCGGTATCCTCCCCTCTGCGCGTATTCAACAACGTGGCGGCGGAGA
CTGTCATTTACCTCGCGAACCTCCTCCTCTACTACAAGATGATTCGATCG
TGCAGGATCAACTATATCTACCTCTTCGACATGGACCCGCGGGCGGTATC
CTCCCCTCTGCGCGTATTCAACAACGTGGCGGCGGAGACTGTCATTTACC
TCGCGAACCTCCTCCTCTACTACAAG
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