mRNA_H-canaliculatus_F_contig11681.1491.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11681.1491.1
Unique NamemRNA_H-canaliculatus_F_contig11681.1491.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11681.1491.1 vs. uniprot
Match: A0A6H5JGJ4_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ4_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.560e-6
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = -1 
Query:  202 QHLLAGLTPEAVRLVKESIFSAARVEYALLYGLAGTANPP 321
            +HLLAGL P+AVRLVKE IFS ARVEYA LYGL   A PP
Sbjct:  649 RHLLAGLIPDAVRLVKERIFSVARVEYARLYGLR-KATPP 687
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BLAST of mRNA_H-canaliculatus_F_contig11681.1491.1 vs. uniprot
Match: D8LCP6_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP6_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 4.180e-5
Identity = 29/43 (67.44%), Postives = 32/43 (74.42%), Query Frame = -1 
Query:  193 QHLLAGLTPEAVRLVKESIFSAARVEYALLYGLAGTANPPVSS 321
            +HLLAGL P+AVRLVK+ IFS ARVEYA LY L     PPV S
Sbjct:  827 RHLLAGLIPDAVRLVKDRIFSVARVEYARLYRLRKVM-PPVGS 868
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11681.1491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JGJ4_9PHAE2.560e-675.00Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LCP6_ECTSI4.180e-567.44Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11681contigH-canaliculatus_F_contig11681:1584..1940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size358
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928860.6448567-CDS-H-canaliculatus_F_contig11681:1583..19401622928860.6448567-CDS-H-canaliculatus_F_contig11681:1583..1940Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11681 1584..1940 +
1696845592.4594257-CDS-H-canaliculatus_F_contig11681:1583..19401696845592.4594257-CDS-H-canaliculatus_F_contig11681:1583..1940Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11681 1584..1940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11681.1491.1prot_H-canaliculatus_F_contig11681.1491.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11681 1584..1940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11681.1491.1

>prot_H-canaliculatus_F_contig11681.1491.1 ID=prot_H-canaliculatus_F_contig11681.1491.1|Name=mRNA_H-canaliculatus_F_contig11681.1491.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=119bp
RRRPASFRPTSCSSRLLSTATPRAVALPGFLPACVPPRKTIVILVRRRCT
RHAVSPLPPRRRRRRRHRRICGARQPVQESVLHACGGKDAFLHQADGLRR
ESGQQVLTAGAPPVLGLCA
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mRNA from alignment at H-canaliculatus_F_contig11681:1584..1940+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11681.1491.1 ID=mRNA_H-canaliculatus_F_contig11681.1491.1|Name=mRNA_H-canaliculatus_F_contig11681.1491.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=357bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11681:1584..1940+ (Hapterophycus canaliculatus Oshoro5f female)
CGCCGCCGCCCCGCCTCTTTCCGTCCCACCAGCTGTTCTTCTCGGCTGCT
CTCCACCGCTACCCCGCGGGCCGTGGCTCTTCCTGGCTTCCTCCCCGCAT
GCGTCCCACCACGGAAAACCATCGTTATCCTCGTCCGCCGTCGGTGCACC
AGGCACGCCGTTTCGCCTCTCCCGCCGCGCCGCCGCCGACGACGACGACA
CCGGCGGATTTGCGGTGCCCGCCAGCCCGTACAGGAGAGCGTACTCCACG
CGTGCGGCGGAAAAGATGCTTTCCTTCACCAGGCGGACGGCCTCCGGCGT
GAGTCCGGCCAGCAGGTGCTGACGGCGGGGGCTCCGCCCGTGCTCGGGCT
GTGCGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11681:1584..1940+

>mRNA_H-canaliculatus_F_contig11681.1491.1 ID=mRNA_H-canaliculatus_F_contig11681.1491.1|Name=mRNA_H-canaliculatus_F_contig11681.1491.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=714bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11681:1584..1940+ (Hapterophycus canaliculatus Oshoro5f female)
CGCCGCCGCCCCGCCTCTTTCCGTCCCACCAGCTGTTCTTCTCGGCTGCT
CTCCACCGCTACCCCGCGGGCCGTGGCTCTTCCTGGCTTCCTCCCCGCAT
GCGTCCCACCACGGAAAACCATCGTTATCCTCGTCCGCCGTCGGTGCACC
AGGCACGCCGTTTCGCCTCTCCCGCCGCGCCGCCGCCGACGACGACGACA
CCGGCGGATTTGCGGTGCCCGCCAGCCCGTACAGGAGAGCGTACTCCACG
CGTGCGGCGGAAAAGATGCTTTCCTTCACCAGGCGGACGGCCTCCGGCGT
GAGTCCGGCCAGCAGGTGCTGACGGCGGGGGCTCCGCCCGTGCTCGGGCT
GTGCGCCCGCCGCCGCCCCGCCTCTTTCCGTCCCACCAGCTGTTCTTCTC
GGCTGCTCTCCACCGCTACCCCGCGGGCCGTGGCTCTTCCTGGCTTCCTC
CCCGCATGCGTCCCACCACGGAAAACCATCGTTATCCTCGTCCGCCGTCG
GTGCACCAGGCACGCCGTTTCGCCTCTCCCGCCGCGCCGCCGCCGACGAC
GACGACACCGGCGGATTTGCGGTGCCCGCCAGCCCGTACAGGAGAGCGTA
CTCCACGCGTGCGGCGGAAAAGATGCTTTCCTTCACCAGGCGGACGGCCT
CCGGCGTGAGTCCGGCCAGCAGGTGCTGACGGCGGGGGCTCCGCCCGTGC
TCGGGCTGTGCGCC
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