mRNA_H-canaliculatus_F_contig10120.149.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10120.149.1
Unique NamemRNA_H-canaliculatus_F_contig10120.149.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10120.149.1 vs. uniprot
Match: A0A6H5KYB6_9PHAE (EXS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB6_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 5.690e-18
Identity = 39/52 (75.00%), Postives = 48/52 (92.31%), Query Frame = 2 
Query:  257 QMLMHRFPAVVPAGCLPLLLCFYVIFQLVFPVRKTWEFWRVIFRSLVAPLCK 412
            ++LM+RFP ++PAGCLPLLLCFYVIFQ+++PV K+ EFWRVI RSLVAPLCK
Sbjct:   32 KILMNRFPPILPAGCLPLLLCFYVIFQVIYPVHKSKEFWRVIIRSLVAPLCK 83
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10120.149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYB6_9PHAE5.690e-1875.00EXS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10120contigH-canaliculatus_F_contig10120:2269..3498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size414
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928641.7183528-CDS-H-canaliculatus_F_contig10120:2268..23451622928641.7183528-CDS-H-canaliculatus_F_contig10120:2268..2345Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10120 2269..2345 -
1696845509.1368139-CDS-H-canaliculatus_F_contig10120:2268..23451696845509.1368139-CDS-H-canaliculatus_F_contig10120:2268..2345Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10120 2269..2345 -
1622928641.7323923-CDS-H-canaliculatus_F_contig10120:3161..34981622928641.7323923-CDS-H-canaliculatus_F_contig10120:3161..3498Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10120 3162..3498 -
1696845509.1458976-CDS-H-canaliculatus_F_contig10120:3161..34981696845509.1458976-CDS-H-canaliculatus_F_contig10120:3161..3498Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10120 3162..3498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10120.149.1prot_H-canaliculatus_F_contig10120.149.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10120 2269..3498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10120.149.1

>prot_H-canaliculatus_F_contig10120.149.1 ID=prot_H-canaliculatus_F_contig10120.149.1|Name=mRNA_H-canaliculatus_F_contig10120.149.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=138bp
LTLPHSSPCLVSPAIAWPGARPGTLCFAPDHHRRHHPGGLRARGGDLSLP
PPLLGVCGWFGCGGADRLSLFLEMEHGTKSTRSARADADAPVPRGRTGWL
PSAAPVLLRHLSARIPGPEDLGVLASDLPILGGAPLQG
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mRNA from alignment at H-canaliculatus_F_contig10120:2269..3498-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10120.149.1 ID=mRNA_H-canaliculatus_F_contig10120.149.1|Name=mRNA_H-canaliculatus_F_contig10120.149.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1230bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10120:2269..3498- (Hapterophycus canaliculatus Oshoro5f female)
CTTACTCTCCCTCATTCCTCTCCCTGCCTGGTGTCGCCTGCTATCGCGTG
GCCTGGCGCGCGGCCTGGGACGCTTTGCTTCGCCCCCGACCACCACCGCC
GCCATCACCCCGGGGGGTTGCGCGCGCGCGGTGGTGACCTGTCGTTGCCC
CCGCCGCTGCTTGGTGTGTGCGGGTGGTTCGGCTGCGGCGGCGCCGACCG
ACTGTCTCTTTTCCTCGAAATGGAACACGGAACGAAATCAACGCGATCGG
CGAGGGCAGATGCTGATGCACCGGTTCCCCGCGGTCGTACCGGCTGGTTG
CCTTCCGCTGCTCCTGTGCTTCTACGTCATCTTTCAGGTGCGGACAAGTA
GAGGTCGAGAGGACGGAACACGCAGAACGCACTCGCGCATCGCCGTGAGA
AAGGAAGAACTCTCGTTTGCGCAGAGGAGCAGAGGCGGAAAGGGCAGAAA
GCAAAGCAAAGCGAAGCTCGCTCGCTCGAAAATGAGGTCAAAAACGCGAC
CACTCTTGAAAAACAGGCGAGATCTGCCGTCTTGCATGCACCCTCGGCCC
CGGAGGGTTACACCTCGAGCGAGTCCTTTTGTGCACGGCGTTTTTCTTGT
TTCGTGTGCAGGGCCTCTCAATCGAAGCAATCGCTGCTGCTGCCGCTACT
GCTGCTGATGTGGCGCGATTTGTGCCTTGCGGCTGTTTGAAACGAACGAC
CCTCAAGCCCCCGACGCCAAGCGACGCCTTCCAGAGACCTTTTGGTCTTG
TCCTTTCTGCAGGATGCACGGGGGCACACGAAGGCGGGAACGACGCACGC
AAGCACGTTTTCGCCGAGTTCGCGGCCGCCCGCTCCTTTCTTCGTAGAGT
GCCGATCTCTCCCTGCAGCACAGGCCCCCCTTTTTTTGTTTCTCGCAGCT
CAAATAGCGCTCGTTCTTTGCACGCTTTCCCCCTCCTGGTATTTCTACCT
CCACCCTCTAGTTTCTCCTAAATCGGGATGCGATTTGCCTTGCCACCGTT
GTTGTTATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTCATTGATAGTGTTGTCGTCGTTCTTGCTAACTGCTGCCACTCCT
GCTTCTGTTGGCGTTCTGTTTGTGCTCGTGCTGTCGCTGCCCACTTCCGA
AAGCTCGTATTCCCGGTCCGGAAGACTTGGGAGTTCTGGCGAGTGATCTT
CCGATCCTTGGTGGCGCCCCTCTGCAAGGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10120:2269..3498-

>mRNA_H-canaliculatus_F_contig10120.149.1 ID=mRNA_H-canaliculatus_F_contig10120.149.1|Name=mRNA_H-canaliculatus_F_contig10120.149.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=828bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10120:2269..3498- (Hapterophycus canaliculatus Oshoro5f female)
CTTACTCTCCCTCATTCCTCTCCCTGCCTGGTGTCGCCTGCTATCGCGTG
GCCTGGCGCGCGGCCTGGGACGCTTTGCTTCGCCCCCGACCACCACCGCC
GCCATCACCCCGGGGGGTTGCGCGCGCGCGGTGGTGACCTGTCGTTGCCC
CCGCCGCTGCTTGGTGTGTGCGGGTGGTTCGGCTGCGGCGGCGCCGACCG
ACTGTCTCTTTTCCTCGAAATGGAACACGGAACGAAATCAACGCGATCGG
CGAGGGCAGATGCTGATGCACCGGTTCCCCGCGGTCGTACCGGCTGGTTG
CCTTCCGCTGCTCCTGTGCTTCTACGTCATCTTTCAGCTTACTCTCCCTC
ATTCCTCTCCCTGCCTGGTGTCGCCTGCTATCGCGTGGCCTGGCGCGCGG
CCTGGGACGCTTTGCTTCGCCCCCGACCACCACCGCCGCCATCACCCCGG
GGGGTTGCGCGCGCGCGGTGGTGACCTGTCGTTGCCCCCGCCGCTGCTTG
GTGTGTGCGGGTGGTTCGGCTGCGGCGGCGCCGACCGACTGTCTCTTTTC
CTCGAAATGGAACACGGAACGAAATCAACGCGATCGGCGAGGGCAGATGC
TGATGCACCGGTTCCCCGCGGTCGTACCGGCTGGTTGCCTTCCGCTGCTC
CTGTGCTTCTACGTCATCTTTCAGCTCGTATTCCCGGTCCGGAAGACTTG
GGAGTTCTGGCGAGTGATCTTCCGATCCTTGGTGGCGCCCCTCTGCAAGG
TCTCGTATTCCCGGTCCGGAAGACTTGGGAGTTCTGGCGAGTGATCTTCC
GATCCTTGGTGGCGCCCCTCTGCAAGGT
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