mRNA_H-canaliculatus_F_contig11681.1492.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11681.1492.1
Unique NamemRNA_H-canaliculatus_F_contig11681.1492.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11681.1492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11681contigH-canaliculatus_F_contig11681:2337..2920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_000680.1
Exons2
Model size274
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928860.4833736-CDS-H-canaliculatus_F_contig11681:2336..25241622928860.4833736-CDS-H-canaliculatus_F_contig11681:2336..2524Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11681 2337..2524 -
1696845592.42661-CDS-H-canaliculatus_F_contig11681:2336..25241696845592.42661-CDS-H-canaliculatus_F_contig11681:2336..2524Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11681 2337..2524 -
1622928860.4988356-CDS-H-canaliculatus_F_contig11681:2835..29201622928860.4988356-CDS-H-canaliculatus_F_contig11681:2835..2920Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11681 2836..2920 -
1696845592.4401355-CDS-H-canaliculatus_F_contig11681:2835..29201696845592.4401355-CDS-H-canaliculatus_F_contig11681:2835..2920Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11681 2836..2920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11681.1492.1prot_H-canaliculatus_F_contig11681.1492.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11681 2337..2920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11681.1492.1

>prot_H-canaliculatus_F_contig11681.1492.1 ID=prot_H-canaliculatus_F_contig11681.1492.1|Name=mRNA_H-canaliculatus_F_contig11681.1492.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=91bp
GWARGGGRVFCVRVVEEDEEGVGARSDGARRRRLEPPTRRPAFTETEKDV
AAAAPPSPSPNGTAHGRRSHGRVAESTLGSGSEGGADDEGA
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mRNA from alignment at H-canaliculatus_F_contig11681:2337..2920-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11681.1492.1 ID=mRNA_H-canaliculatus_F_contig11681.1492.1|Name=mRNA_H-canaliculatus_F_contig11681.1492.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=584bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11681:2337..2920- (Hapterophycus canaliculatus Oshoro5f female)
GGGTGGGCGCGAGGGGGCGGGAGAGTGTTCTGCGTCCGTGTCGTCGAAGA
GGACGAGGAAGGGGTGGGAGCGAGAAGCGACGGAGGTGAGGGAGGAGAAG
GGAGGCCGCCGATGCGTGCGTGTGGGTAGGTAAGCGTTCTAATGCCGCGT
GAGCTTGGGGATGCCGCCGTCGCGCTCACGAACACGAGGATCCTCTGGGG
TAAGGTTGCCAGGAAGATGGGACAGCTGTTTATTGCGTCCTGCACGGGCT
GCGGTTGCTGGGGCCGTTGTCGCCCTCGGCCTCCCGTTAACCCCGCGCCG
AAAAGCAACAGCACCCCGCTCCGACTCCGCTCACGTCACCCCCCGCCCCC
TTCGACTCTCGAACGACTTTCCGGCCCGGCCCGCGCAAATGGGAAGCTCG
CCGGCGTCGCCTCGAGCCCCCGACCCGCAGGCCCGCCTTTACCGAGACGG
AGAAAGACGTCGCGGCCGCCGCGCCCCCCTCCCCCTCCCCTAACGGGACG
GCGCACGGCCGCAGGAGCCACGGAAGAGTTGCCGAGAGCACTCTCGGCAG
CGGGAGCGAGGGCGGAGCAGACGACGAAGGTGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11681:2337..2920-

>mRNA_H-canaliculatus_F_contig11681.1492.1 ID=mRNA_H-canaliculatus_F_contig11681.1492.1|Name=mRNA_H-canaliculatus_F_contig11681.1492.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=546bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11681:2337..2920- (Hapterophycus canaliculatus Oshoro5f female)
GGGTGGGCGCGAGGGGGCGGGAGAGTGTTCTGCGTCCGTGTCGTCGAAGA
GGACGAGGAAGGGGTGGGAGCGAGAAGCGACGGAGGGGTGGGCGCGAGGG
GGCGGGAGAGTGTTCTGCGTCCGTGTCGTCGAAGAGGACGAGGAAGGGGT
GGGAGCGAGAAGCGACGGAGCTCGCCGGCGTCGCCTCGAGCCCCCGACCC
GCAGGCCCGCCTTTACCGAGACGGAGAAAGACGTCGCGGCCGCCGCGCCC
CCCTCCCCCTCCCCTAACGGGACGGCGCACGGCCGCAGGAGCCACGGAAG
AGTTGCCGAGAGCACTCTCGGCAGCGGGAGCGAGGGCGGAGCAGACGACG
AAGGTGCTCTCGCCGGCGTCGCCTCGAGCCCCCGACCCGCAGGCCCGCCT
TTACCGAGACGGAGAAAGACGTCGCGGCCGCCGCGCCCCCCTCCCCCTCC
CCTAACGGGACGGCGCACGGCCGCAGGAGCCACGGAAGAGTTGCCGAGAG
CACTCTCGGCAGCGGGAGCGAGGGCGGAGCAGACGACGAAGGTGCT
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