mRNA_H-canaliculatus_F_contig11671.1480.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11671.1480.1
Unique NamemRNA_H-canaliculatus_F_contig11671.1480.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11671.1480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11671contigH-canaliculatus_F_contig11671:1120..1991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size275
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928859.526865-CDS-H-canaliculatus_F_contig11671:1119..12901622928859.526865-CDS-H-canaliculatus_F_contig11671:1119..1290Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11671 1120..1290 +
1696845592.0917401-CDS-H-canaliculatus_F_contig11671:1119..12901696845592.0917401-CDS-H-canaliculatus_F_contig11671:1119..1290Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11671 1120..1290 +
1622928859.5407145-CDS-H-canaliculatus_F_contig11671:1887..19891622928859.5407145-CDS-H-canaliculatus_F_contig11671:1887..1989Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11671 1888..1989 +
1696845592.100505-CDS-H-canaliculatus_F_contig11671:1887..19891696845592.100505-CDS-H-canaliculatus_F_contig11671:1887..1989Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11671 1888..1989 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11671.1480.1prot_H-canaliculatus_F_contig11671.1480.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11671 1120..1989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11671.1480.1

>prot_H-canaliculatus_F_contig11671.1480.1 ID=prot_H-canaliculatus_F_contig11671.1480.1|Name=mRNA_H-canaliculatus_F_contig11671.1480.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=91bp
QHPHQHQRQASCTSCIRRKKACDGEQPCGPCRSADHGDHCVFSGKRKSSS
SASDLSKQQSTMPRQKQRREEAGGGSFLDGSSSSAALAADP
back to top

mRNA from alignment at H-canaliculatus_F_contig11671:1120..1991+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11671.1480.1 ID=mRNA_H-canaliculatus_F_contig11671.1480.1|Name=mRNA_H-canaliculatus_F_contig11671.1480.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=872bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11671:1120..1991+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCACCCTCACCAGCACCAGCGGCAGGCCTCCTGCACCTCCTGCATACG
CCGCAAGAAGGCGTGCGACGGGGAGCAGCCGTGCGGCCCGTGTCGCAGTG
CCGACCACGGCGACCACTGCGTCTTCTCCGGGAAGAGGAAGTCTTCCTCC
TCCGCCTCCGACCTCTCCAAGGTGCGCACCGGGCGGGCGTACGGGTGGCC
GGGGTTGGCGAGGCCGGGTAGAGGCGGGCGGGAGCACCAAGGGAAGCCAG
AGCTTGCTTGCCCGTGGCAGCGCTCGGGGGCTCCGCGATGGGGGCAGGGG
GGGGAGGGGGGGAGGGGGAGAGATGCCCTTGCTCTCGTTCCCCGTTGCTT
CCGATGCTGTCTTTCGTCGTTTCGTTTGCTCCTCGACCCACGTTTTGTCG
AGGGGCGGTAGGTCTGAACTCCTCCTGGGTAGGCTCCTGACGGAGTCTCT
CTGTGCCTCACCCGTCCCCGTCCGCATCCCCTGGGTATCGATTGCGCGTG
GTTGTCGCGGCTCGGACAAGGGAGAGGTGGGGTGTGTGGTAGTTGCTTCC
GAAGGGTGATCCCACCGGCTTTCGCCACCATCGATACCCACAGCTGGTTG
TACGGAGTTTCGCTTGACAGACAGACGGACAGACACATACACACACAAAC
ATGCACACACACACGCACAAACACGCATGCACGCACGCACTCGTTGCTTT
TCTCAAACACGATTGTGCGAGGGGCAGCCTGCTAATCTGCCAAATATTAT
CGGTTCCGCAATCCACAGCAGCAGTCGACCATGCCACGCCAAAAGCAGCG
GCGGGAAGAGGCCGGCGGGGGATCCTTTCTGGACGGATCATCATCATCTG
CGGCGTTGGCGGCCGACCCGGG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11671:1120..1991+

>mRNA_H-canaliculatus_F_contig11671.1480.1 ID=mRNA_H-canaliculatus_F_contig11671.1480.1|Name=mRNA_H-canaliculatus_F_contig11671.1480.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=546bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11671:1120..1991+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCACCCTCACCAGCACCAGCGGCAGGCCTCCTGCACCTCCTGCATACG
CCGCAAGAAGGCGTGCGACGGGGAGCAGCCGTGCGGCCCGTGTCGCAGTG
CCGACCACGGCGACCACTGCGTCTTCTCCGGGAAGAGGAAGTCTTCCTCC
TCCGCCTCCGACCTCTCCAAGCAGCACCCTCACCAGCACCAGCGGCAGGC
CTCCTGCACCTCCTGCATACGCCGCAAGAAGGCGTGCGACGGGGAGCAGC
CGTGCGGCCCGTGTCGCAGTGCCGACCACGGCGACCACTGCGTCTTCTCC
GGGAAGAGGAAGTCTTCCTCCTCCGCCTCCGACCTCTCCAAGCAGCAGTC
GACCATGCCACGCCAAAAGCAGCGGCGGGAAGAGGCCGGCGGGGGATCCT
TTCTGGACGGATCATCATCATCTGCGGCGTTGGCGGCCGACCCGCAGCAG
TCGACCATGCCACGCCAAAAGCAGCGGCGGGAAGAGGCCGGCGGGGGATC
CTTTCTGGACGGATCATCATCATCTGCGGCGTTGGCGGCCGACCCG
back to top