mRNA_H-canaliculatus_F_contig11669.1476.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11669.1476.1
Unique NamemRNA_H-canaliculatus_F_contig11669.1476.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11669.1476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11669contigH-canaliculatus_F_contig11669:1433..1762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11669.1476.1prot_H-canaliculatus_F_contig11669.1476.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11669 1447..1758 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928858.917901-UTR-H-canaliculatus_F_contig11669:1432..14461622928858.917901-UTR-H-canaliculatus_F_contig11669:1432..1446Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11669 1433..1446 +
1696845591.868665-UTR-H-canaliculatus_F_contig11669:1432..14461696845591.868665-UTR-H-canaliculatus_F_contig11669:1432..1446Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11669 1433..1446 +
1622928858.9680943-UTR-H-canaliculatus_F_contig11669:1758..17621622928858.9680943-UTR-H-canaliculatus_F_contig11669:1758..1762Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11669 1759..1762 +
1696845591.8894098-UTR-H-canaliculatus_F_contig11669:1758..17621696845591.8894098-UTR-H-canaliculatus_F_contig11669:1758..1762Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11669 1759..1762 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928858.936051-CDS-H-canaliculatus_F_contig11669:1446..17581622928858.936051-CDS-H-canaliculatus_F_contig11669:1446..1758Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11669 1447..1758 +
1696845591.877567-CDS-H-canaliculatus_F_contig11669:1446..17581696845591.877567-CDS-H-canaliculatus_F_contig11669:1446..1758Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11669 1447..1758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11669.1476.1

>prot_H-canaliculatus_F_contig11669.1476.1 ID=prot_H-canaliculatus_F_contig11669.1476.1|Name=mRNA_H-canaliculatus_F_contig11669.1476.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=104bp
MFRTPLWSAFDAINFSCLQEMDFSGSAKGVWYLVQLTHADPDPKNGNNAS
AVCSHFPISPHSAPCGYRPTPTLDPSLLIIFLYQSTTCLCSVCPSPLPPL
SCI*
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mRNA from alignment at H-canaliculatus_F_contig11669:1433..1762+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11669.1476.1 ID=mRNA_H-canaliculatus_F_contig11669.1476.1|Name=mRNA_H-canaliculatus_F_contig11669.1476.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=330bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11669:1433..1762+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCTCTGGACGGGATGTTCCGAACACCGCTTTGGTCGGCATTTGACGCG
ATCAACTTTTCTTGCCTTCAAGAGATGGACTTTTCAGGATCGGCAAAGGG
GGTCTGGTATCTTGTGCAACTTACTCACGCTGACCCCGACCCAAAAAATG
GGAATAACGCGAGCGCCGTATGCTCCCATTTTCCAATTTCGCCCCACTCC
GCCCCTTGTGGTTATCGCCCGACGCCCACGCTGGACCCGTCTCTCCTGAT
CATATTCTTGTACCAATCTACCACTTGTTTGTGCTCAGTGTGTCCTTCTC
CCCTCCCTCCCCTCTCCTGCATATAAACTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11669:1433..1762+

>mRNA_H-canaliculatus_F_contig11669.1476.1 ID=mRNA_H-canaliculatus_F_contig11669.1476.1|Name=mRNA_H-canaliculatus_F_contig11669.1476.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=624bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11669:1433..1762+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTCCGAACACCGCTTTGGTCGGCATTTGACGCGATCAACTTTTCTTG
CCTTCAAGAGATGGACTTTTCAGGATCGGCAAAGGGGGTCTGGTATCTTG
TGCAACTTACTCACGCTGACCCCGACCCAAAAAATGGGAATAACGCGAGC
GCCGTATGCTCCCATTTTCCAATTTCGCCCCACTCCGCCCCTTGTGGTTA
TCGCCCGACGCCCACGCTGGACCCGTCTCTCCTGATCATATTCTTGTACC
AATCTACCACTTGTTTGTGCTCAGTGTGTCCTTCTCCCCTCCCTCCCCTC
TCCTGCATATAAATGTTCCGAACACCGCTTTGGTCGGCATTTGACGCGAT
CAACTTTTCTTGCCTTCAAGAGATGGACTTTTCAGGATCGGCAAAGGGGG
TCTGGTATCTTGTGCAACTTACTCACGCTGACCCCGACCCAAAAAATGGG
AATAACGCGAGCGCCGTATGCTCCCATTTTCCAATTTCGCCCCACTCCGC
CCCTTGTGGTTATCGCCCGACGCCCACGCTGGACCCGTCTCTCCTGATCA
TATTCTTGTACCAATCTACCACTTGTTTGTGCTCAGTGTGTCCTTCTCCC
CTCCCTCCCCTCTCCTGCATATAA
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