mRNA_H-canaliculatus_F_contig11665.1471.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11665.1471.1
Unique NamemRNA_H-canaliculatus_F_contig11665.1471.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11665.1471.1 vs. uniprot
Match: D7FGV5_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV5_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 2.440e-75
Identity = 144/205 (70.24%), Postives = 160/205 (78.05%), Query Frame = 1 
Query:    4 LVGRLAVMSTELQGMGVRFSEASALSVAERVSDAQAVVGLMNGVFRHSECGPLRAETVLRSCRAQAWLVAQGLPHLAGLLKESRRTLEGELRTGRCYSDPFAKAELEHAGGAAALVAAFQSLGDPLPLSDGSDCFAAQLPRILIGILRSLLPLVAAYPPQHHKQTTGPPAATATAAGAAVWPGRD--GRPYGGSAAVVLGSALYG 612
            LVGRL     ELQGMG RFSEASALSVAER+SDAQAVVGLMN VFRHSECGPLRAETVLRSC AQ WLVA G  HLA LLKESRRTLEGELRTGRCY+DP+AKAEL+ AGGAAAL++AFQ+ G+PLP +DGS CFAAQLPRIL+GILR LLPLVAA+PPQ   ++TG            + PG D    P  G    VLG++LYG
Sbjct: 1240 LVGRLYATLAELQGMGGRFSEASALSVAERLSDAQAVVGLMNSVFRHSECGPLRAETVLRSCAAQDWLVAGGFEHLARLLKESRRTLEGELRTGRCYADPYAKAELDDAGGAAALLSAFQADGNPLPTNDGSSCFAAQLPRILVGILRHLLPLVAAHPPQ---RSTG---------AETLLPGVDPFSPPAPGGCEAVLGASLYG 1432
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11665.1471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FGV5_ECTSI2.440e-7570.24Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11665contigH-canaliculatus_F_contig11665:1225..3859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size613
Cds size588
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11665.1471.1prot_H-canaliculatus_F_contig11665.1471.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11665 1249..3859 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928858.4251003-UTR-H-canaliculatus_F_contig11665:1224..12481622928858.4251003-UTR-H-canaliculatus_F_contig11665:1224..1248Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11665 1225..1248 +
1696845591.666311-UTR-H-canaliculatus_F_contig11665:1224..12481696845591.666311-UTR-H-canaliculatus_F_contig11665:1224..1248Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11665 1225..1248 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928858.444192-CDS-H-canaliculatus_F_contig11665:1248..12661622928858.444192-CDS-H-canaliculatus_F_contig11665:1248..1266Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11665 1249..1266 +
1696845591.6750078-CDS-H-canaliculatus_F_contig11665:1248..12661696845591.6750078-CDS-H-canaliculatus_F_contig11665:1248..1266Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11665 1249..1266 +
1622928858.4609144-CDS-H-canaliculatus_F_contig11665:2368..25241622928858.4609144-CDS-H-canaliculatus_F_contig11665:2368..2524Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11665 2369..2524 +
1696845591.6871617-CDS-H-canaliculatus_F_contig11665:2368..25241696845591.6871617-CDS-H-canaliculatus_F_contig11665:2368..2524Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11665 2369..2524 +
1622928858.4730432-CDS-H-canaliculatus_F_contig11665:2999..31131622928858.4730432-CDS-H-canaliculatus_F_contig11665:2999..3113Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11665 3000..3113 +
1696845591.6995976-CDS-H-canaliculatus_F_contig11665:2999..31131696845591.6995976-CDS-H-canaliculatus_F_contig11665:2999..3113Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11665 3000..3113 +
1622928858.48908-CDS-H-canaliculatus_F_contig11665:3559..38591622928858.48908-CDS-H-canaliculatus_F_contig11665:3559..3859Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11665 3560..3859 +
1696845591.7110534-CDS-H-canaliculatus_F_contig11665:3559..38591696845591.7110534-CDS-H-canaliculatus_F_contig11665:3559..3859Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11665 3560..3859 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11665.1471.1

>prot_H-canaliculatus_F_contig11665.1471.1 ID=prot_H-canaliculatus_F_contig11665.1471.1|Name=mRNA_H-canaliculatus_F_contig11665.1471.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=196bp
MSTELQGMGVRFSEASALSVAERVSDAQAVVGLMNGVFRHSECGPLRAET
VLRSCRAQAWLVAQGLPHLAGLLKESRRTLEGELRTGRCYSDPFAKAELE
HAGGAAALVAAFQSLGDPLPLSDGSDCFAAQLPRILIGILRSLLPLVAAY
PPQHHKQTTGPPAATATAAGAAVWPGRDGRPYGGSAAVVLGSALYG
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mRNA from alignment at H-canaliculatus_F_contig11665:1225..3859+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11665.1471.1 ID=mRNA_H-canaliculatus_F_contig11665.1471.1|Name=mRNA_H-canaliculatus_F_contig11665.1471.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2635bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11665:1225..3859+ (Hapterophycus canaliculatus Oshoro5f female)
GTGTTGGTGGGCAGGCTTGCCGTCATGTCGACCGAGCTGCAGGTGCGCTT
GTGTGTCTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGCGTGCATATGTTC
GTGCGTGATTGAGCGTATGTGCCTGCAGTTTTGTTGTGCATGTTTTTTTT
GTTTTGGTCATTTTTCTGGATTTTTGACCGGGCAGCTTCTCGACACCAAC
CTCACCGCCCCGCGGACCAGTCCAGTGCCGCCAAACTCAGCTCGGAAAAA
GTCGTGCCCCCCCCCCCTAGAAGAGGATTTTTTGGCCAACATATCCGGCT
TTCGGCGTTTGCGCGTCGTGTCAGCTGTTCTTCCTACCGATCAATCGTTT
TTACTTGAGCGCTCATGTCGCGGCAGTACGTTGCGTTGGAGGCACCCAAA
TACCTGTTGCGGCTTGGCGGATGTCGGAATGAACAGTTTTCCCAGGAAAA
AGAGTCAACAATACCGAAGGAAGGAATGCTCTCCTATGAGACAGAGGTAC
CGCGACTCAGGGGGATCGCGTTGAATTCCTCACCGCAGTGTGACATTTTT
TGTTCGCTGGGCGAGTCGACCGGTGTAATAAAAAAGAAGGTAAGAAGGTA
AGAAGGTAAGAAGGTACGAATGTACGAATGTACGAAGCGGCTGTTCTTTC
TCCCCTCTGTACCACTCGCGCGGGCGAAGTTGCCCCCTGCTTCCCACCTT
GTGCATCCCACTTCTTCCGTCTACCACGTGAACTCCCTCCTCTCTTTGAG
GTTGTCCTTGAGCCGTCGCATCTGGTGCGTCCTAGCATACCTTCCAACCC
TTTGCGTTTCAGCTCCTACCCTACACCCTACACCCTGTACCGTCTGTACC
CTACAGGTATAGGCCACGTTTATCTTTACTCTTTGGTGCAACCTCGTCGT
TTCGTGCCGAGATGGTCTGTTTGGCGACTGTGCTTTGAGCGCTTCGCCTC
CACACTCGTCTTGCTTGCAGCAGCCTCTCTGTGTATCTACCTCGACTCAC
GGCACCTTTCCACATACCTAGACTGCTGTAACGTAACCTACCTCTCTCGC
CGACAAGCTCAAGACCAAGATCGCTCGAACATCCAGGCCGGCCTCGACTT
CCGACCGACCAACTTGCACACCGCCACTTTTGTAACGCCGCCAGGGCATG
GGAGTTCGATTCTCGGAAGCGTCGGCTCTATCCGTGGCCGAGCGAGTTTC
GGACGCTCAAGCCGTGGTGGGGCTAATGAACGGCGTCTTCAGGCACTCGG
AGTGCGGCCCTCTGCGGGCGGAGACGGTTCTCAGGAGTTGTAGGGCGCAG
GTGTGCGGGTTGTCGACCGATGCTTTTTTGGAGCCATGTGTTGAGCGGTG
CTCATCCTGACTATTTTCAAGGTGTTTCAATCCATGAGAGTCTTTTAGAG
CAAATTGTCCTACGGTTTGTGTCCTGCTTCTAAATAGGGTTGTTCTGCTC
AGTTCCATTGTTTTCCAGCCCGAACATCACGATTGGTGTCTGCTTGAGCC
CCTACCAATCGTCTCTCTCCCCACAACCATGGCGAGTTGGGTCAATGCTC
CAGCCGACTATGCATCGAACCGCAGTGCACTGCAGACGTCTCGAAAAATG
TGCCTACAATCTAAGTTGTAGGTAGAGCAGAGTGATCGACTTGCAGAGGA
AGGGGTCGCTGTGAGGAGACACGTTGACTGTCTATCCGTGCCACCCGTGC
CATCCGTGACACCCGTGCCATCCTTGACACCCATGCCACCGGCTTTGGGT
GTCTTCGTGTCCCGCTGTGACGCAGGCATGGCTCGTCGCGCAAGGGCTCC
CCCATCTAGCGGGGCTTCTGAAGGAGAGCAGGCGCACGTTGGAGGGGGAG
CTAAGGACGGGGCGATGCTACTCGGACCCCTTCGCAAAGGCGGGTGTAAC
CTTCACATAGCCTTCTTTTTTTTTATGCCGCAGCGTAGCAGGTTGGCCTC
AACAACGGGCCTTGTCTCACGTTGGCGTTTGCACTCTGTCTGAGGATCGT
GGCCGCCGACAGCTATCATATGATGGTACTACAGTTGTACAAGTAGTGCC
CTGAGAGTTGTACGACCTTAGATGATTGGCCACCCCGTCTTTGTTGCAAG
AGTCCGTGTAATCTTCATCTCGTGATGTTGGTTGGATTTTTCGCGTCCTT
GGCGGGCCGGCGTTTGGGTTTGGGCTGCTCTCGCCGTGAAGGCAATGAGT
CTATCAGTAGCAAGCGGTGTTCTTGCCAGCCTTCTTGCTCTTGAGGACGA
CACTCGCGTTTTTTTTTATCCTCCCTCGCCCCCTTCCGCGCGTAATCAAT
GCCGCACAATGGCCCACGATCGCATGAAACAACAGGCCGAACTCGAACAC
GCCGGAGGGGCAGCCGCGCTCGTAGCCGCCTTCCAGTCCCTGGGAGACCC
CCTCCCCCTGTCGGACGGGTCGGACTGCTTCGCCGCTCAGCTTCCGCGGA
TTCTCATCGGAATCCTACGCTCCCTGCTGCCGCTCGTCGCGGCCTACCCT
CCCCAACACCACAAACAAACGACGGGGCCCCCCGCGGCGACGGCGACTGC
TGCGGGAGCCGCGGTCTGGCCGGGCAGAGACGGCCGCCCGTACGGCGGTT
CGGCAGCGGTTGTGCTGGGCTCCGCGCTGTATGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11665:1225..3859+

>mRNA_H-canaliculatus_F_contig11665.1471.1 ID=mRNA_H-canaliculatus_F_contig11665.1471.1|Name=mRNA_H-canaliculatus_F_contig11665.1471.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1176bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11665:1225..3859+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGACCGAGCTGCAGATGTCGACCGAGCTGCAGGGCATGGGAGTTCG
ATTCTCGGAAGCGTCGGCTCTATCCGTGGCCGAGCGAGTTTCGGACGCTC
AAGCCGTGGTGGGGCTAATGAACGGCGTCTTCAGGCACTCGGAGTGCGGC
CCTCTGCGGGCGGAGACGGTTCTCAGGAGTTGTAGGGCGCAGGGCATGGG
AGTTCGATTCTCGGAAGCGTCGGCTCTATCCGTGGCCGAGCGAGTTTCGG
ACGCTCAAGCCGTGGTGGGGCTAATGAACGGCGTCTTCAGGCACTCGGAG
TGCGGCCCTCTGCGGGCGGAGACGGTTCTCAGGAGTTGTAGGGCGCAGGC
ATGGCTCGTCGCGCAAGGGCTCCCCCATCTAGCGGGGCTTCTGAAGGAGA
GCAGGCGCACGTTGGAGGGGGAGCTAAGGACGGGGCGATGCTACTCGGAC
CCCTTCGCAAAGGCATGGCTCGTCGCGCAAGGGCTCCCCCATCTAGCGGG
GCTTCTGAAGGAGAGCAGGCGCACGTTGGAGGGGGAGCTAAGGACGGGGC
GATGCTACTCGGACCCCTTCGCAAAGGCCGAACTCGAACACGCCGGAGGG
GCAGCCGCGCTCGTAGCCGCCTTCCAGTCCCTGGGAGACCCCCTCCCCCT
GTCGGACGGGTCGGACTGCTTCGCCGCTCAGCTTCCGCGGATTCTCATCG
GAATCCTACGCTCCCTGCTGCCGCTCGTCGCGGCCTACCCTCCCCAACAC
CACAAACAAACGACGGGGCCCCCCGCGGCGACGGCGACTGCTGCGGGAGC
CGCGGTCTGGCCGGGCAGAGACGGCCGCCCGTACGGCGGTTCGGCAGCGG
TTGTGCTGGGCTCCGCGCTGTATGGGGCCGAACTCGAACACGCCGGAGGG
GCAGCCGCGCTCGTAGCCGCCTTCCAGTCCCTGGGAGACCCCCTCCCCCT
GTCGGACGGGTCGGACTGCTTCGCCGCTCAGCTTCCGCGGATTCTCATCG
GAATCCTACGCTCCCTGCTGCCGCTCGTCGCGGCCTACCCTCCCCAACAC
CACAAACAAACGACGGGGCCCCCCGCGGCGACGGCGACTGCTGCGGGAGC
CGCGGTCTGGCCGGGCAGAGACGGCCGCCCGTACGGCGGTTCGGCAGCGG
TTGTGCTGGGCTCCGCGCTGTATGGG
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