mRNA_H-canaliculatus_F_contig1012.147.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1012.147.1
Unique NamemRNA_H-canaliculatus_F_contig1012.147.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1012.147.1 vs. uniprot
Match: D7FM71_ECTSI (60S ribosomal protein L38 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM71_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 9.020e-38
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:    4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQIQ 216
            PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQ+Q
Sbjct:    2 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQLQ 72
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1012.147.1 vs. uniprot
Match: A0A836CJ21_9STRA (Ribosomal protein L38 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ21_9STRA)

HSP 1 Score: 113 bits (283), Expect = 6.940e-27
Identity = 58/70 (82.86%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:    4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQI 213
            PKQIHDIRDFLQKARR+DAKSVKIK  K    TKFKIRCSRYLYTLCV DK+KADKLTQSLPPGL +K I
Sbjct:    2 PKQIHDIRDFLQKARRKDAKSVKIK--KTAEVTKFKIRCSRYLYTLCVADKDKADKLTQSLPPGLQRKDI 69
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1012.147.1 vs. uniprot
Match: A0A485KGK6_9STRA (Aste57867_4412 protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KGK6_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.840e-24
Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:    4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQI 213
            PKQI DIRDFLQKARR+DA+SVKIK  K     KFKIRCS+YLYTLCVTD EKADKLTQSLPPGL +K I
Sbjct:    2 PKQITDIRDFLQKARRKDARSVKIK--KTAQVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1012.147.1 vs. uniprot
Match: W2IQQ0_PHYPR (60S ribosomal protein L38 n=16 Tax=Peronosporaceae TaxID=4777 RepID=W2IQQ0_PHYPR)

HSP 1 Score: 105 bits (263), Expect = 3.890e-24
Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQI 213
            PKQI DIRDFLQKARR+DA+SVKIK  K+    KFKIRCS+YLYTLCVTD EKADKLTQSLPPGL +K I
Sbjct:    2 PKQITDIRDFLQKARRKDARSVKIK--KSDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1012.147.1 vs. uniprot
Match: A0A067CFE6_SAPPC (60S ribosomal protein L38 n=3 Tax=Oomycota TaxID=4762 RepID=A0A067CFE6_SAPPC)

HSP 1 Score: 105 bits (263), Expect = 3.890e-24
Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:    4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQI 213
            PKQI DIRDFLQKARR+DA+SVKIK  K     KFKIRCS+YLYTLCVTD EKADKLTQSLPPGL +K I
Sbjct:    2 PKQITDIRDFLQKARRKDARSVKIK--KTPQVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1012.147.1 vs. uniprot
Match: M4BFU5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BFU5_HYAAE)

HSP 1 Score: 105 bits (263), Expect = 6.650e-24
Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQI 213
            PKQI DIRDFLQKARR+DA+SVKIK  K+    KFKIRCS+YLYTLCVTD EKADKLTQSLPPGL +K I
Sbjct:   21 PKQITDIRDFLQKARRKDARSVKIK--KSDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 88
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1012.147.1 vs. uniprot
Match: A0A1E7ETU4_9STRA (Ribosomal protein L38 n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7ETU4_9STRA)

HSP 1 Score: 105 bits (261), Expect = 7.300e-24
Identity = 56/70 (80.00%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:    4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQI 213
            PKQI DIRDFLQKARR DAK VKIK  K    TKFKIRCSR+LYTLCVTD EKADKLTQSLPPGL +K I
Sbjct:    2 PKQITDIRDFLQKARRSDAKLVKIK--KRDSQTKFKIRCSRFLYTLCVTDAEKADKLTQSLPPGLQRKSI 69
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1012.147.1 vs. uniprot
Match: F0Y0E5_AURAN (Ribosomal protein L38 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0E5_AURAN)

HSP 1 Score: 103 bits (257), Expect = 2.570e-23
Identity = 55/70 (78.57%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:    4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQI 213
            PK+I DIRDFLQKARRRDAKSVKIK  K     KFKIRCSRYLYTL V+D EKADKLTQSLPPGL +K I
Sbjct:    2 PKEISDIRDFLQKARRRDAKSVKIKKTKGV--VKFKIRCSRYLYTLRVSDTEKADKLTQSLPPGLQRKDI 69
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1012.147.1 vs. uniprot
Match: K3WQ98_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQ98_GLOUD)

HSP 1 Score: 103 bits (256), Expect = 4.050e-23
Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:    4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQI 213
            PKQI DIRDFLQKARR+DA+SVKIK  KA    KFKIRCS+YLYTL VTD EKADKLTQSLPPGL +K I
Sbjct:    7 PKQITDIRDFLQKARRKDARSVKIK--KADKVVKFKIRCSKYLYTLVVTDAEKADKLTQSLPPGLQRKDI 74
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1012.147.1 vs. uniprot
Match: A0A4D9CXA3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXA3_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.700e-22
Identity = 52/70 (74.29%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:    4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQI 213
            PK+I DIRDFLQKARR+DAKSVK+K  K++  TKFKIRCSRYLYTL V+D +KA+KLTQSLPPGL +K I
Sbjct:    2 PKEIKDIRDFLQKARRKDAKSVKVK--KSSTGTKFKIRCSRYLYTLSVSDIDKAEKLTQSLPPGLQRKDI 69
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1012.147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM71_ECTSI9.020e-3898.5960S ribosomal protein L38 n=2 Tax=Ectocarpus TaxID... [more]
A0A836CJ21_9STRA6.940e-2782.86Ribosomal protein L38 n=1 Tax=Tribonema minus TaxI... [more]
A0A485KGK6_9STRA2.840e-2478.57Aste57867_4412 protein n=3 Tax=Saprolegniaceae Tax... [more]
W2IQQ0_PHYPR3.890e-2478.5760S ribosomal protein L38 n=16 Tax=Peronosporaceae... [more]
A0A067CFE6_SAPPC3.890e-2478.5760S ribosomal protein L38 n=3 Tax=Oomycota TaxID=4... [more]
M4BFU5_HYAAE6.650e-2478.57Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A1E7ETU4_9STRA7.300e-2480.00Ribosomal protein L38 n=2 Tax=Bacillariaceae TaxID... [more]
F0Y0E5_AURAN2.570e-2378.57Ribosomal protein L38 n=1 Tax=Aureococcus anophage... [more]
K3WQ98_GLOUD4.050e-2378.57Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A4D9CXA3_9STRA1.700e-2274.29Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1012contigH-canaliculatus_F_contig1012:12313..16797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.3
Seed ortholog evalue4.5e-32
Seed eggNOG ortholog2880.D7FM71
Preferred nameRPL38
KEGG koko:K02923
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000027,GO:0000028,GO:0000184,GO:0000956,GO:0001501,GO:0001503,GO:0002181,GO:0003008,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007275,GO:0007423,GO:0007498,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009790,GO:0009887,GO:0009888,GO:0009889,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010605,GO:0010608,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031323,GO:0031326,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033291,GO:0033365,GO:0034248,GO:0034463,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0042254,GO:0042255,GO:0042273,GO:0042274,GO:0042471,GO:0042474,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043583,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048318,GO:0048513,GO:0048519,GO:0048562,GO:0048568,GO:0048598,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050877,GO:0050954,GO:0051171,GO:0051179,GO:0051234,GO:0051246,GO:0051641,GO:0051649,GO:0060255,GO:0065003,GO:0065007,GO:0070727,GO:0070925,GO:0070972,GO:0070992,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0090596,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904,GO:2000112
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsKOG3499@1,KOG3499@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L38e
Ec32 orthologEc-16_004840.1
Exons3
Model size1743
Cds size219
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1012.147.1prot_H-canaliculatus_F_contig1012.147.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1012 13837..16797 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928641.303731-UTR-H-canaliculatus_F_contig1012:12312..138361622928641.303731-UTR-H-canaliculatus_F_contig1012:12312..13836Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1012 12313..13836 -
1696845508.921494-UTR-H-canaliculatus_F_contig1012:12312..138361696845508.921494-UTR-H-canaliculatus_F_contig1012:12312..13836Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1012 12313..13836 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928641.3229523-CDS-H-canaliculatus_F_contig1012:13836..139291622928641.3229523-CDS-H-canaliculatus_F_contig1012:13836..13929Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 13837..13929 -
1696845508.935485-CDS-H-canaliculatus_F_contig1012:13836..139291696845508.935485-CDS-H-canaliculatus_F_contig1012:13836..13929Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 13837..13929 -
1622928641.3418102-CDS-H-canaliculatus_F_contig1012:15029..151051622928641.3418102-CDS-H-canaliculatus_F_contig1012:15029..15105Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 15030..15105 -
1696845508.9435997-CDS-H-canaliculatus_F_contig1012:15029..151051696845508.9435997-CDS-H-canaliculatus_F_contig1012:15029..15105Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 15030..15105 -
1622928641.3577135-CDS-H-canaliculatus_F_contig1012:16747..167971622928641.3577135-CDS-H-canaliculatus_F_contig1012:16747..16797Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 16748..16797 -
1696845508.9519138-CDS-H-canaliculatus_F_contig1012:16747..167971696845508.9519138-CDS-H-canaliculatus_F_contig1012:16747..16797Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 16748..16797 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1012.147.1

>prot_H-canaliculatus_F_contig1012.147.1 ID=prot_H-canaliculatus_F_contig1012.147.1|Name=mRNA_H-canaliculatus_F_contig1012.147.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=73bp
QPKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVT
DKEKADKLTQSLPPGLHKKQIQ*
back to top

mRNA from alignment at H-canaliculatus_F_contig1012:12313..16797-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1012.147.1 ID=mRNA_H-canaliculatus_F_contig1012.147.1|Name=mRNA_H-canaliculatus_F_contig1012.147.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4485bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1012:12313..16797- (Hapterophycus canaliculatus Oshoro5f female)
CAGCCGAAGCAAATCCATGACATCAGGGACTTCCTGCAGAAGGCCCGCCG
GTAAGACACGTCTTATCCGTAGCACCAAAGTGACCGCAATAAGAGCATTT
CTTGATGGCCATGGTCGTGTTTGCTCTGAACCCCCCTCTGAAGCCCGTGA
GATATCACCACCCCCTGGACCTTGGAACCTCCCGGCGTTCAACAGCAGCC
TCTGTAACATTCCGCGTGTTACCATCCATCCTCGAGCAGCAGAGGTGAAT
ACAACTGGCTGTGCTGAATGTTTTCCCTCTTCAGGTTTTGATAGACGAAC
ATATGTGTGCGAAGAGCTGTAGTATCGAGCTACGGTGAGCAGTGTTCGAA
CACCCGTCCTCTGAACTACAAGACGCCGATCTCCACCTGTGCAGAGAGAA
AATCAAGCGCTAAAGCGACCCAACGGTATCCTGCACTCACCGTTATGCCA
GCCAATCATAGACGGGGGATGTCAAGATCCTGCTCCATGATCGCCGAACA
CTCTCTCTTGGATAAAATATCGTTTAGTCGTCCTTCCAATGACCTCCCGT
GCCTCCATTATATTTTATTTTACTCTCTCGTAGGTCTCGAGTCTCGAGTC
TCGAGTGAGCTTCCGGTCGTGTTTCATTAGTGCACTGAGCGTACACATAC
CGAGTGACCCATGAAGTAGAAACACAGCAGTGTGATTTGAAAATCGGAGA
ACTCCATGCATCCCACACATGAAAGGCTCAGCATCATCTGTCGCGAATCT
TGGAGGTAAACCGTCGCCTGCCTGTACAATCTCTGTCGTCGTGAAATTCG
AGGGTATTCCTTGGAAGCAGATCAAATCTGTAGCCTGTCAGTGCTCACAC
GATTCGTTGGGAACAGTAATGTTGTGGGCGGCCCTACCCTAGGATTAAGC
TTTTCGAGCGGTGAAACAATCCCGGGGAGATGGAGTGGCAACTCACATGA
TGAAGTCGGCTTCCGCTCGGGGAGGAATGGCGGATGGAGCTCTCCATTCT
TTGTATACACTGAAACAGGCACCTTGCCCGCTCTCGGGCGTTGTGCCGGT
GCGGACGGTGCTGCACAAACCCACACCCATCGGTGTTGTGTTCGCATCTG
GTCCGATCCCCTCTTGGGTCCCGTGAAGAAAAGGAGGTGGCTGAGGAAGG
ACTTTCGGCCAACATGAAGAAGAAATGCGTTGCGAAGACCCTTTCCCTCG
CGTCTGCAACGACCAATACGCAGCTTTTCCCGCTGCCACATGACTTCATT
TGCACTGATACTACTCACTGGTACAGCAGCCGCGAGACTGGCTTCACCCG
TGTGCGAGAGCTGTCAGCTGTTCTGACTGCTCGGGCAACAGAGTCACTTA
CACGTCCACCAGTAGGTAGTATGGTTTTCCCTCGTGTCCGGCGCTCGCTC
CACGTGTGTTGTTCTTCAAATCTTGCGTTGCCGATCGCTCCTCGGCTGTG
CACTCTGACCCCAGATTCGCCTTGACTGGTATTGCCCACGGTGATGCTTA
TGGGCCGGGAGCCGTCAGGCTGTGGTATGTCAATACCCGTGTGCTGTCCA
CCTTCGTTCTTGTTCCATGCTTCACGCTCCCGTGGTGTTATTGCACTTGG
CTTCTATTGTCCTAAGCCGTCGCTGACGAAAGGAAATGGCTTCTGTATGA
CGTGTATGACATGCAAAAATTTGCGTATTGAATTATGTACAGCCGCGACG
CCAAGTCGGTGAAGATCAAGAACAACAAGGCGACTCACTCGACCAAGTTC
AAGATCCGATGCTCCAGGGTAAGTCAACGAAGGACGAAAATAAGAAGATC
GTTTTGTCATGATGCGTCGTTCTAGTAGCTGATACGAGTCAAAGTAGGCC
GACCACTACGGAAAGTGTTCTGTCGTTGCAGTCGATCGAGAGGGGAACGT
AACAATCCTTTGATATCGGAGACGGCATGAACCCGTTCCTTCTACTACAA
GAGTTCAAGTCAACCCAACCTGTTGTGCAAGTGATTTTGGAATTGGCACT
ACATTGTTCTATCTCTGCCGCTCATTTGCGACCTAGCGATGACTATGATT
ATGGCAGGCGCGCGCCCGAAGCGCTGACAAATTTCCAGGCCAACGTTCAG
GCTGCCCAGGATGCTCATAGCGTTCTGCACGTCACAGGTTGGGCGGTCTG
GCTCCATCAAAAGCCGCACTTTTTTTAATGTCAGGGCTGCAGGAACACAC
ATCTACTTGTAATGATAGGGAGTACTCTGTAGTGCTAGAAGACTATAAGA
GTTTTTCACTCCCAGCTTCTACTAAGCACCGAATAGATCGGGTGCGTTCT
GTAACTGCTTGCTGTAGATGATCATCTGCCCTTAATGGAAGCACCTCAAG
ATGCCCGCACTTACTTCCCTCGCCATTACGTGTAATCGAATAGTGAGCTG
TTTTGAGCCTTCATATACCGCCCCCCGCTGCCCGTCTCGAGAATCTTCCA
AGAGATCGTGACACCCGCGCCCCATACGTTTCAGGACGGCTCGCATTACG
CCGATCGAAACCCGCTTGAGTTAGGTTCTCTTAGTTTTTTTTTTTCTGTT
TTTGTGAATGATCGCAGCACCTGTTCATCCTGTGGTGCATGACGGCTTCG
TCGAACCCCAAATCGAGCATCACTGCATTCGCTTCGGTTTGATAGTAGTG
AACGCAGTAGCCGGTGACAAGCGACGCTAGTCCACCTCTACCCTGACCGG
CCTTAATTTTATGAACGCGCTTGGGCTCCTTGGCCATAGCATTCCAATCT
TTCACCCCCCAACACGCTCATTGCTCTTTCTTTTTCTGTCGCTGTTGCCG
TTTTCGTTTCCTTGGCCGTTACCGCCCTTTGGAAACGCCGTGAACACTGT
CGCTGCCAACTCGAGCAGTACCTGTACACCCTGTGCGTCACCGACAAGGA
GAAGGCGGACAAGCTTACGCAGTCCCTGCCCCCGGGCCTGCACAAAAAGC
AGATCCAATAATTTCTCCGAGAGGTTATCTTCACTGGACCAGCCTTGCTG
TCGCCATAGGCTTGCTGGTATAGCTGCCTGCGGAGGCTAGCTGCTGGCTA
CCTGGACCTGAAATTTGATATGCTGACTCCCGCGGAAGCTCGGGAATGGA
TGCGCGGAGGATGCGGAGCGTCGCGCTAAACGGGGACTGGTCGTCGTGAT
GTTGCTGATTCTCTCGTGCTCTCTTTTTTCTGTTCCTCGAGGTGATGCGA
GTGAACGTATTCGTTCACTGCGCAGGTAGCGGGGTAGTCGATGCCCTCTT
TTCAGTGCTGGGGTGGTTGTGGTGATGGTGGATGCTGACGCCGAATATTT
CGGATGGGGAAAGTGCCGAGCTGACTGCTGCTCGAAAAAAAGGGTTTTTT
CAACATGTTTTTTCTCCAATGGTCGACCTGTTGTTGACACCCCCTGATGC
TCGTGCAGTAGTGCTGTGGATACGCGGGACGATCTTTGAGTTCGACTCCC
TCATGTACGTCCATCTTTGAACGGGCACCTCGGGATCACTCGCTTTCCGA
TGCTATAATCCGCCAAAGCCGTCGTTTTCCGATGCTATAATCCGCCAAAG
CCGTCGTCTCCCGGCCCCTTTCCAACTTCTTGCCGCAAATACGGCAACGC
GGCACGTAGCTCACGGTCGTTCTCCGTACTTCCTGGATAGTTCAGACGTG
CGACCACACGCCCGTCCCACGACTCTCACGGTTGACTATTCGGGACTGCA
CAAAGCACGCAGAACGCCGTCTCTAAAACTGAGGCTTGTGTCTCCGTGCG
GCCTGTGTGCGTCTTGTTATGGAGAAGTACCGACGGAAAGGCATCAGCCA
CGCACAGAACCCAAGCCGTTCGGTGTATCAAAGTTATACGCCTTCCGGAG
CCGAGCCTTTTGGACGTTCCCCGACAAGCTTGTACGTAGCGGCGAAGGCA
TTGCGTACGCGAAGGCGCCCTGCAGTACCTGCTCTGTAGATGGTGTAAAG
CCCATGTCGCCCAACGTGTGACCTGGACCACATAACAACTCCCGAGCTAA
CGGAAAGGTGCACGAAAGACGTGGCGCACCCCGGAGTGTTCCTTTCTTAC
ACAAAATGGTACGACTGAGTTTTGCGGTCCGTGACAAACAACGAAACTGG
CCAATCGGACGCGCCCGGATCCTCCATTGACCAGTATCACGACTGCGGGT
ATGTCGTCGAGTGAAAAAAAAAGATGGAAACGAGCACCTCAGCTGAAAGA
AACCACCGCTCGTCGACTACCCCCGAAAAGCCAGACCCGACTTTCACCGT
GCGTCCTGCAAGTACGTACCATCTTCTTGCCACCCTCGAACGCTCTCAAG
GCATGGCCAACTACGGCTAAGCTCAGGCGAGCAATCGTCGATGCCCCAGA
GCCTCCATCAGCGGCAGCATCAGCGGGAGGTACATATCTCAAAATCACAT
CAAACCACCAGTCATAACAAGTCTGAACCTGCCCCCTCGACAACTTCGCG
CTCTCTACCGCAACAGGCAGGCACGCAAATCCCGC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1012:12313..16797-

>mRNA_H-canaliculatus_F_contig1012.147.1 ID=mRNA_H-canaliculatus_F_contig1012.147.1|Name=mRNA_H-canaliculatus_F_contig1012.147.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=438bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1012:12313..16797- (Hapterophycus canaliculatus Oshoro5f female)
CAGCCGAAGCAAATCCATGACATCAGGGACTTCCTGCAGAAGGCCCGCCG
CAGCCGAAGCAAATCCATGACATCAGGGACTTCCTGCAGAAGGCCCGCCG
CCGCGACGCCAAGTCGGTGAAGATCAAGAACAACAAGGCGACTCACTCGA
CCAAGTTCAAGATCCGATGCTCCAGGCCGCGACGCCAAGTCGGTGAAGAT
CAAGAACAACAAGGCGACTCACTCGACCAAGTTCAAGATCCGATGCTCCA
GGTACCTGTACACCCTGTGCGTCACCGACAAGGAGAAGGCGGACAAGCTT
ACGCAGTCCCTGCCCCCGGGCCTGCACAAAAAGCAGATCCAATAATACCT
GTACACCCTGTGCGTCACCGACAAGGAGAAGGCGGACAAGCTTACGCAGT
CCCTGCCCCCGGGCCTGCACAAAAAGCAGATCCAATAA
back to top