mRNA_H-canaliculatus_F_contig11663.1470.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig11663.1470.1 vs. uniprot
Match: D8LTB2_ECTSI (50S ribosomal protein L10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTB2_ECTSI) HSP 1 Score: 257 bits (656), Expect = 1.790e-79 Identity = 142/192 (73.96%), Postives = 165/192 (85.94%), Query Frame = 2
Query: 2 LKMAVIDTTRPPKISTRPGKVKVVEEVAGLLEKSTLVFSLPSSRITGNQVVALRKGLPDGCTAKVVKNKLMRIACKGTAFEELAEVTTGENFWMFVEGEDNLAEPIKYIAEFSKGVDGE--GWGKMPFKSGVFDGSLVDGPGVVAISKLPTKQELMQRLAIGIKAVPTKLGRSIXXXXXXXXXXXXLAFAAE 571
L MAVIDTT+PPK++ RP K+KV+EEV LLE S++VFS+PSS I+ NQVVALRK LP+GCTAKVVKNKLMRIA G+ F +LA+VTTGENFW+F+EGEDNLAEPIKY+AEF+K D + GWG PFKSGVF G ++DGPGVVAISKLPTK+ELMQRLAI + +VPTKLGRS XXXXXXXXXXX LAFA E
Sbjct: 41 LNMAVIDTTKPPKLTKRPAKLKVIEEVKSLLESSSMVFSVPSSYISANQVVALRKDLPEGCTAKVVKNKLMRIASDGSEFAQLADVTTGENFWIFIEGEDNLAEPIKYVAEFAKQFDKDTPGWGGSPFKSGVFGGDVLDGPGVVAISKLPTKKELMQRLAIAVNSVPTKLGRSXXXXXXXXXXXXKLAFAPE 232
BLAST of mRNA_H-canaliculatus_F_contig11663.1470.1 vs. uniprot
Match: A0A835YRM7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRM7_9STRA) HSP 1 Score: 122 bits (306), Expect = 1.900e-28 Identity = 71/156 (45.51%), Postives = 100/156 (64.10%), Query Frame = 2
Query: 44 STRPGKVKVVEEVAGLLEKSTLVFSLPSSRITGNQVVALRKGLPDGCTAKVVKNKLMRIACKGTAFEE--LAEVTTGENFWMFVEGEDNLAEPIKYIAEFSKGVDGEGWGKMPFKSGVFDGSLVDGPGVVAISKLPTKQELMQRLAIGIKAVPTKL 505
STR GK+ + V L K+T++F++PSS++ N V +RK LP G A+VVKNKLMR+A +G E + ++T GEN W FVE D+L+E I +F K V+ + F GV +G +D GV AIS LP+K EL +R+A+G+KAVPTK+
Sbjct: 48 STRAGKLATIASVKEDLAKATMIFAIPSSQLKVNSVTDMRKKLPAGTKARVVKNKLMRLAVEGAPQWEAVVGDMTKGENMWFFVE--DDLSESITVAKDFIKVVNKKDTHAPKF--GVLEGKALDAAGVEAISNLPSKTELYRRIAVGVKAVPTKI 199
BLAST of mRNA_H-canaliculatus_F_contig11663.1470.1 vs. uniprot
Match: A0A7S4J3C3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J3C3_9STRA) HSP 1 Score: 113 bits (282), Expect = 2.090e-25 Identity = 64/158 (40.51%), Postives = 94/158 (59.49%), Query Frame = 2
Query: 44 STRPGKVKVVEEVAGLLEKSTLVFSLPSSRITGNQVVALRKGLPDGCTAKVVKNKLMRIACKGTAFEELAEVTTGENFWMFVEGEDNLAEPIKYIAEFSKGVDGEGWGKMPFKSGVFDGSLVDGPGVVAISKLPTKQELMQRLAIGIKAVPTKLGRSI 517
+T GK VE + GLL+ S ++F++P+ ++ + LRK LP+G VVKNKLM A +GT +E +E+ +G N W F+E +++ IK +F+K D + P G +G D GV AI KLP+K EL+ ++A GIKAVPTKL R +
Sbjct: 45 TTLEGKRVKVERIKGLLDTSEMIFTVPAGSMSVSDTQDLRKSLPEGTVMSVVKNKLMARALEGTDYESASEMLSGPNMWFFIE--EDIGATIKAYNKFTKDYDKKE--SHPILGGAMEGVNYDAAGVDAIGKLPSKTELIAKIAGGIKAVPTKLARVV 198
BLAST of mRNA_H-canaliculatus_F_contig11663.1470.1 vs. uniprot
Match: A0A0G4GLP8_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GLP8_VITBC) HSP 1 Score: 111 bits (277), Expect = 1.110e-23 Identity = 66/167 (39.52%), Postives = 100/167 (59.88%), Query Frame = 2
Query: 44 STRPGKVKVVEEVAGLLEKSTLVFSLPSSRITGNQVVALRKGLPDGCTAKVVKNKLMRIACKGTAFEELAEVTTGENFWMFVEGED--NLAEPIKYIAEFSKGVDGEGWGKMP-------FKSGVFDGSLVDGPGVVAISKLPTKQELMQRLAIGIKAVPTKLGRSI 517
+T+ GK +++ + LL + L+F+L S++ N+ V LR+ LP+G VKN+L+R+A KGT FE+ A TG++ ++FV ED + E +K +F KG MP K G FD +++D GV AISKLPTK EL+Q++A+ I VPT+L S+
Sbjct: 86 TTKEGKQATIDKFSDLLGDTNLLFALEGSKLGPNERVKLRRSLPEGTKIHTVKNRLLRVAAKGTDFEDYANGATGQSLYVFVTHEDYKGVMEALK---QFGKG--------MPDFREHNVIKGGSFDSTVLDAEGVDAISKLPTKLELIQKIAVLINMVPTRLATSV 241
BLAST of mRNA_H-canaliculatus_F_contig11663.1470.1 vs. uniprot
Match: A0A6V2PHN8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2PHN8_9STRA) HSP 1 Score: 106 bits (264), Expect = 9.740e-23 Identity = 68/160 (42.50%), Postives = 95/160 (59.38%), Query Frame = 2
Query: 41 ISTRP-GKVKVVEEVAGLLEKSTLVFSLPSSRITGNQVVALRKGLPDGCTAKVVKNKLMRIACKGTAFEELAEVTTGENFWMFVEGEDNLAEPIKYIAEFSKGVDGEGWGKMPFKSGVFDGSLVDGPGVVAISKLPTKQELMQRLAIGIKAVPTKLGRSI 517
++T P GK V V LL+KS +VFS+P+ IT Q LR+ LP+G T VVKN LM+ A +GT ++ E+ G N W FVE +++ IK F+K +G+ M GV +G + D GV AISKLP+K EL+ ++A I AVPTK+ R +
Sbjct: 39 MATSPAGKQAKVAAVKELLDKSEMVFSVPAGSITVAQTQLLRRALPEGTTMSVVKNTLMQRAIEGTDYQVAGELLKGPNMWFFVE--EDIGGSIKAFNAFTK-ENGKTESHMVL-GGVIEGVVYDSAGVTAISKLPSKLELIAQIAGAINAVPTKVARVV 194
BLAST of mRNA_H-canaliculatus_F_contig11663.1470.1 vs. uniprot
Match: A0A5J4Z5L2_PORPP (50S ribosomal protein L10 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z5L2_PORPP) HSP 1 Score: 103 bits (257), Expect = 9.130e-22 Identity = 62/158 (39.24%), Postives = 89/158 (56.33%), Query Frame = 2
Query: 59 KVKVVEEVAGLLEKSTLVFSLPSSRITGNQVVALRKGLPDGCTAKVVKNKLMRIACKGTAFEEL---AEVTTGENFWMFVEGED--NLAEPIKYIAEFSKGVDGEGWGKMPFKSGVFDGSLVDGPGVVAISKLPTKQELMQRLAIGIKAVPTKLGRSI 517
K K+V EV+ +++ST+V SLP +T QV L+ +P+G T + VKN +++ A T + L +E+T G N W+F+ E E I + SK D GVF G D G+VA+SKLPTKQEL Q++A+GI V TK+ R+I
Sbjct: 43 KSKLVSEVSATMQQSTMVLSLPLEGLTVKQVNELKAAVPEGVTVRCVKNTIVKRAVADTEYSVLESGSELTKGHNLWVFIPEESVRGTVEGITGFLKTSKKAD-----TNAINGGVFGGEAYDADGIVALSKLPTKQELYQQIAVGINQVNTKVARAI 195
BLAST of mRNA_H-canaliculatus_F_contig11663.1470.1 vs. uniprot
Match: K0STH8_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0STH8_THAOC) HSP 1 Score: 106 bits (264), Expect = 1.140e-21 Identity = 66/158 (41.77%), Postives = 93/158 (58.86%), Query Frame = 2
Query: 44 STRPGKVKVVEEVAGLLEKSTLVFSLPSSRITGNQVVALRKGLPDGCTAKVVKNKLMRIACKGTAFEELAEVTTGENFWMFVEGEDNLAEPIKYIAEFSKGVDGEGWGKMPFKSGVFDGSLVDGPGVVAISKLPTKQELMQRLAIGIKAVPTKLGRSI 517
+T GK V V LL+ S +VF++P+S IT QV LR+ LP+G TAKVVKNKLM A +GT +E + E+ G N W F+E +++ +K +F K D G +G+ D GV ISKLP+K EL+ ++A I+AVPTK+ R +
Sbjct: 163 TTLEGKKNTVSAVKELLDSSEMVFTVPASGITVAQVQGLRRSLPEGTTAKVVKNKLMSRAIEGTEYEPVNEMLKGANMWFFIE--EDIGGSVKSWKKFVK--DEALAESHSILGGNIEGTNYDTAGVEQISKLPSKIELITQIASRIQAVPTKVARVV 316
BLAST of mRNA_H-canaliculatus_F_contig11663.1470.1 vs. uniprot
Match: A0A7S1E238_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E238_9STRA) HSP 1 Score: 100 bits (249), Expect = 1.080e-20 Identity = 64/154 (41.56%), Postives = 88/154 (57.14%), Query Frame = 2
Query: 44 STRPGKVKVVEEVAGLLEKSTLVFSLPSSRITGNQVVALRKGLPDGCTAKVVKNKLMRIACKGTAFEELAEVTTGENFWMFVEGEDNLAEPIKYIAEFSKGVD-GEGWGKMPFKSGVFDGSLVDGPGVVAISKLPTKQELMQRLAIGIKAVPTK 502
ST GK + V ++ L++ S +VF++P+ IT +Q LR+ LP+G TA VVKN LM A GT +E AE+ G + W F+E D++ IK F K D E G + GV + +L D GV I LP+K EL ++A IKAVPTK
Sbjct: 41 STLEGKKEKVAQIQSLIDTSQMVFTVPAGSITVSQSEILRRSLPEGTTAAVVKNTLMERAVSGTDYETAAELLKGPHMWFFIE--DDIGASIKAYNGFIKENDLMESHGII---GGVIESTLYDADGVKQIGNLPSKLELYAKIAGSIKAVPTK 189
BLAST of mRNA_H-canaliculatus_F_contig11663.1470.1 vs. uniprot
Match: A0A7S2ZLQ0_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZLQ0_9RHOD) HSP 1 Score: 99.4 bits (246), Expect = 6.810e-20 Identity = 58/145 (40.00%), Postives = 86/145 (59.31%), Query Frame = 2
Query: 77 EVAGLLEKSTLVFSLPSSRITGNQVVALRKGLPDGCTAKVVKNKLMRIACKGTAFEELAEVTTGENFWMFVEGEDNLAEPIKYIAEFSKGVDGEGWGKMPFKSGVFDGSLVDGPGVVAISKLPTKQELMQRLAIGIKAVPTKLGR 511
+V L+KSTL F+LP T +V LR +P+ A VKN L RIA + ++ ++T G N W+F E E ++ ++ I +F+K E + GV + +L DG GV A+SKLP+KQ+L Q++AI I +VPTK+GR
Sbjct: 90 QVREQLDKSTLAFALPLEGYTVKEVSELRNVIPENSCALAVKNTLFRIAIADSTWDVAGDLTKGSNLWIFTE-EADMKGTVEAIKKFNKEKKKEETNGI--SGGVMENTLYDGKGVEALSKLPSKQDLYQKIAIAINSVPTKVGR 231
BLAST of mRNA_H-canaliculatus_F_contig11663.1470.1 vs. uniprot
Match: B8BYW1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYW1_THAPS) HSP 1 Score: 98.2 bits (243), Expect = 7.290e-20 Identity = 62/155 (40.00%), Postives = 91/155 (58.71%), Query Frame = 2
Query: 44 STRPGKVKVVEEVAGLLEKSTLVFSLPSSRITGNQVVALRKGLPDGCTAKVVKNKLMRIACKGTAFEELAE-VTTGENFWMFVEGEDNLAEPIKYIAEFSKGVDGEGWGKMPFKSGVFDGSLVDGPGVVAISKLPTKQELMQRLAIGIKAVPTKL 505
+T GK V V LL+ S +VF++P+S IT ++V LR+ LP+G T KVVKNKLM A +GT + + + TG N W F+E +++ +K +F K + + G +G D GV AISKLP+K EL+ ++A +KAVPTK+
Sbjct: 40 TTLDGKKATVTHVKELLDSSEMVFTVPASGITVSKVQGLRRNLPEGTTVKVVKNKLMARAIEGTEYAPIGDQFLTGANMWFFIE--EDIGGTVKTWNQFVKEAGLKDTHSI--LGGNIEGVNYDTKGVDAISKLPSKMELIAQIAGAVKAVPTKV 190 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11663.1470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig11663.1470.1 >prot_H-canaliculatus_F_contig11663.1470.1 ID=prot_H-canaliculatus_F_contig11663.1470.1|Name=mRNA_H-canaliculatus_F_contig11663.1470.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=217bp MAVIDTTRPPKISTRPGKVKVVEEVAGLLEKSTLVFSLPSSRITGNQVVAback to top mRNA from alignment at H-canaliculatus_F_contig11663:1425..3973- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig11663.1470.1 ID=mRNA_H-canaliculatus_F_contig11663.1470.1|Name=mRNA_H-canaliculatus_F_contig11663.1470.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2549bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11663:1425..3973- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11663:1425..3973- >mRNA_H-canaliculatus_F_contig11663.1470.1 ID=mRNA_H-canaliculatus_F_contig11663.1470.1|Name=mRNA_H-canaliculatus_F_contig11663.1470.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1302bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11663:1425..3973- (Hapterophycus canaliculatus Oshoro5f female)back to top |