mRNA_H-canaliculatus_F_contig1166.1468.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1166.1468.1
Unique NamemRNA_H-canaliculatus_F_contig1166.1468.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1166.1468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1166contigH-canaliculatus_F_contig1166:28084..29098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1015
Cds size579
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928857.5873792-UTR-H-canaliculatus_F_contig1166:28083..285191622928857.5873792-UTR-H-canaliculatus_F_contig1166:28083..28519Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1166 28084..28519 +
1696845591.2981188-UTR-H-canaliculatus_F_contig1166:28083..285191696845591.2981188-UTR-H-canaliculatus_F_contig1166:28083..28519Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1166 28084..28519 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928857.6055868-CDS-H-canaliculatus_F_contig1166:28519..290981622928857.6055868-CDS-H-canaliculatus_F_contig1166:28519..29098Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1166 28520..29098 +
1696845591.3139286-CDS-H-canaliculatus_F_contig1166:28519..290981696845591.3139286-CDS-H-canaliculatus_F_contig1166:28519..29098Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1166 28520..29098 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1166.1468.1prot_H-canaliculatus_F_contig1166.1468.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1166 28520..29098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1166.1468.1

>prot_H-canaliculatus_F_contig1166.1468.1 ID=prot_H-canaliculatus_F_contig1166.1468.1|Name=mRNA_H-canaliculatus_F_contig1166.1468.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=193bp
MYNTVSKTSTLSGVFQFMEIRVQLAGQDDNTNNELQVHEANIQEALVSDA
LGLLDFIPRLLRTKPSQRSFATKISCSLQFLPLKLRAAKLFQTPEVHGGG
HFCTPITGCCCFRCSCELVRVDPQFSVERKKQRIACCCCCCVPRGRSSSR
CRVEQKATKKKERTASRTASARPRVAVPVPLDTRRGTCTGLGK
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mRNA from alignment at H-canaliculatus_F_contig1166:28084..29098+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1166.1468.1 ID=mRNA_H-canaliculatus_F_contig1166.1468.1|Name=mRNA_H-canaliculatus_F_contig1166.1468.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1015bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1166:28084..29098+ (Hapterophycus canaliculatus Oshoro5f female)
TTCAAGTACCCGTATTCATCGGCTCGTATCATACTCGTACTGCTGTAGAA
TTGGGAGCATACGGGATGGAAAAAAAAATCCTCCTCACTCTCCTCAGTTG
TTCCTCCGATTGCTACTCCGGAGAAGACTACGCAGTGATTGTACGAAGTG
TGAAGAGGGAATCGTCCTCGACAGAGGTCAAGGAGGCGGCACCTTCCATA
CGTGATAAGATCCACACCAGTTGTCTCGGAAGACGAATCGAGCACAAAGA
TAGTGGAAAGAAGGTAACAAAGATCCTACAGAGGTAACACACACGACACA
CAGAAGCAAGCAACAAGCAGGACGTAAAATAGTGGAGACAAAACAAACGA
ACAGCAGCTACGTTGTAGCTTTGTCACAATTTGAAGTCAAAACACAGTTC
GCGTAGGCACTTGTAGGTTCCTTGGGACGTAGGAAGATGTATAATACAGT
ATCAAAAACGAGTACTTTGAGCGGGGTTTTTCAATTCATGGAGATAAGGG
TTCAACTAGCAGGCCAGGATGACAACACCAACAACGAACTACAGGTACAT
GAGGCCAACATTCAAGAAGCTCTTGTTTCGGACGCCCTCGGGCTCTTAGA
CTTCATTCCCAGGTTATTGCGAACCAAGCCATCGCAACGATCGTTCGCTA
CCAAGATTTCTTGCTCATTGCAGTTTTTACCCCTCAAACTCCGAGCTGCC
AAACTCTTCCAAACTCCTGAAGTTCACGGTGGTGGCCATTTCTGTACTCC
CATTACCGGCTGCTGCTGCTTCCGCTGCAGCTGTGAACTCGTTCGTGTTG
ATCCGCAATTTTCGGTTGAACGGAAGAAACAACGCATTGCCTGCTGCTGC
TGCTGCTGTGTTCCACGCGGCCGAAGCAGCTCTCGCTGCCGGGTTGAACA
AAAAGCGACTAAAAAAAAAGAAAGAACCGCATCACGCACCGCCTCTGCAA
GGCCGAGGGTCGCTGTGCCTGTGCCCCTGGACACACGGCGAGGAACGTGC
ACCGGCCTCGGAAAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1166:28084..29098+

>mRNA_H-canaliculatus_F_contig1166.1468.1 ID=mRNA_H-canaliculatus_F_contig1166.1468.1|Name=mRNA_H-canaliculatus_F_contig1166.1468.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1158bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1166:28084..29098+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTATAATACAGTATCAAAAACGAGTACTTTGAGCGGGGTTTTTCAATT
CATGGAGATAAGGGTTCAACTAGCAGGCCAGGATGACAACACCAACAACG
AACTACAGGTACATGAGGCCAACATTCAAGAAGCTCTTGTTTCGGACGCC
CTCGGGCTCTTAGACTTCATTCCCAGGTTATTGCGAACCAAGCCATCGCA
ACGATCGTTCGCTACCAAGATTTCTTGCTCATTGCAGTTTTTACCCCTCA
AACTCCGAGCTGCCAAACTCTTCCAAACTCCTGAAGTTCACGGTGGTGGC
CATTTCTGTACTCCCATTACCGGCTGCTGCTGCTTCCGCTGCAGCTGTGA
ACTCGTTCGTGTTGATCCGCAATTTTCGGTTGAACGGAAGAAACAACGCA
TTGCCTGCTGCTGCTGCTGCTGTGTTCCACGCGGCCGAAGCAGCTCTCGC
TGCCGGGTTGAACAAAAAGCGACTAAAAAAAAAGAAAGAACCGCATCACG
CACCGCCTCTGCAAGGCCGAGGGTCGCTGTGCCTGTGCCCCTGGACACAC
GGCGAGGAACGTGCACCGGCCTCGGAAAAATGTATAATACAGTATCAAAA
ACGAGTACTTTGAGCGGGGTTTTTCAATTCATGGAGATAAGGGTTCAACT
AGCAGGCCAGGATGACAACACCAACAACGAACTACAGGTACATGAGGCCA
ACATTCAAGAAGCTCTTGTTTCGGACGCCCTCGGGCTCTTAGACTTCATT
CCCAGGTTATTGCGAACCAAGCCATCGCAACGATCGTTCGCTACCAAGAT
TTCTTGCTCATTGCAGTTTTTACCCCTCAAACTCCGAGCTGCCAAACTCT
TCCAAACTCCTGAAGTTCACGGTGGTGGCCATTTCTGTACTCCCATTACC
GGCTGCTGCTGCTTCCGCTGCAGCTGTGAACTCGTTCGTGTTGATCCGCA
ATTTTCGGTTGAACGGAAGAAACAACGCATTGCCTGCTGCTGCTGCTGCT
GTGTTCCACGCGGCCGAAGCAGCTCTCGCTGCCGGGTTGAACAAAAAGCG
ACTAAAAAAAAAGAAAGAACCGCATCACGCACCGCCTCTGCAAGGCCGAG
GGTCGCTGTGCCTGTGCCCCTGGACACACGGCGAGGAACGTGCACCGGCC
TCGGAAAA
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