mRNA_H-canaliculatus_F_contig1012.146.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1012.146.1
Unique NamemRNA_H-canaliculatus_F_contig1012.146.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1012.146.1 vs. uniprot
Match: D7FM73_ECTSI (Fibronectin type-III domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM73_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 6.350e-49
Identity = 84/111 (75.68%), Postives = 91/111 (81.98%), Query Frame = 1 
Query:    1 MEVPQLQFKGCELDAITLSWQRTGDAGYKLEFREILVPDWAGCRSETVAPASSSSPETTITVTDLNPSSSYLFRLYTVAADGREVGPGPEVAFDTEVVSCAPTNKPCCIIS 333
            M VPQLQFK CELD+ITLSW+R    GYKLEFREILV DWAGCRS  +AP  SSS E +  VT LNPSSSY+FRLYTV A G+EVGPGPE+AFDTEVVSCAPTNK CC IS
Sbjct:    1 MAVPQLQFKDCELDSITLSWERAEGTGYKLEFREILVSDWAGCRSIAIAPEQSSSTEMSTKVTGLNPSSSYIFRLYTVTAAGQEVGPGPEIAFDTEVVSCAPTNKSCCTIS 111
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BLAST of mRNA_H-canaliculatus_F_contig1012.146.1 vs. uniprot
Match: A0A835YPU1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU1_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 6.340e-20
Identity = 47/107 (43.93%), Postives = 68/107 (63.55%), Query Frame = 1 
Query:    4 EVPQLQFKGCELDAITLSWQRTGDAGYKLEFREILVPDWAGCRSETVAPASSSSPETTITVTDLNPSSSYLFRLYTVAADGREVGPGPEVAFDTEVVSCAPTNKPCC 324
            ++P L+F+ C+L+++TL W       YKLEFR++    W    S  + P  S +   T+ VTDL PS +Y+FRL+ + A G+  GPGP+ AFDTEVVSC PT++  C
Sbjct:    7 KLPVLRFQSCDLESLTLEWAGEPGVEYKLEFRDVNRKGWDSAFSLRIPP--SQTGHETVKVTDLLPSMTYIFRLWIMGAGGKLEGPGPDTAFDTEVVSCTPTSRSVC 111
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1012.146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FM73_ECTSI6.350e-4975.68Fibronectin type-III domain-containing protein n=2... [more]
A0A835YPU1_9STRA6.340e-2043.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1012contigH-canaliculatus_F_contig1012:6991..10357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFibronectin type III domain protein
Ec32 orthologEc-16_004820.1
Exons4
Model size1272
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1012.146.1prot_H-canaliculatus_F_contig1012.146.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1012 7927..10357 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928641.0677583-UTR-H-canaliculatus_F_contig1012:6990..79261622928641.0677583-UTR-H-canaliculatus_F_contig1012:6990..7926Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1012 6991..7926 -
1696845508.8639116-UTR-H-canaliculatus_F_contig1012:6990..79261696845508.8639116-UTR-H-canaliculatus_F_contig1012:6990..7926Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1012 6991..7926 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928641.0804133-CDS-H-canaliculatus_F_contig1012:7926..79731622928641.0804133-CDS-H-canaliculatus_F_contig1012:7926..7973Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 7927..7973 -
1696845508.8723342-CDS-H-canaliculatus_F_contig1012:7926..79731696845508.8723342-CDS-H-canaliculatus_F_contig1012:7926..7973Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 7927..7973 -
1622928641.0911262-CDS-H-canaliculatus_F_contig1012:8758..89331622928641.0911262-CDS-H-canaliculatus_F_contig1012:8758..8933Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 8759..8933 -
1696845508.880954-CDS-H-canaliculatus_F_contig1012:8758..89331696845508.880954-CDS-H-canaliculatus_F_contig1012:8758..8933Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 8759..8933 -
1622928641.1031237-CDS-H-canaliculatus_F_contig1012:9794..98491622928641.1031237-CDS-H-canaliculatus_F_contig1012:9794..9849Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 9795..9849 -
1696845508.8956416-CDS-H-canaliculatus_F_contig1012:9794..98491696845508.8956416-CDS-H-canaliculatus_F_contig1012:9794..9849Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 9795..9849 -
1622928641.250916-CDS-H-canaliculatus_F_contig1012:10298..103571622928641.250916-CDS-H-canaliculatus_F_contig1012:10298..10357Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 10299..10357 -
1696845508.907256-CDS-H-canaliculatus_F_contig1012:10298..103571696845508.907256-CDS-H-canaliculatus_F_contig1012:10298..10357Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 10299..10357 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1012.146.1

>prot_H-canaliculatus_F_contig1012.146.1 ID=prot_H-canaliculatus_F_contig1012.146.1|Name=mRNA_H-canaliculatus_F_contig1012.146.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=112bp
MEVPQLQFKGCELDAITLSWQRTGDAGYKLEFREILVPDWAGCRSETVAP
ASSSSPETTITVTDLNPSSSYLFRLYTVAADGREVGPGPEVAFDTEVVSC
APTNKPCCIIS*
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mRNA from alignment at H-canaliculatus_F_contig1012:6991..10357-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1012.146.1 ID=mRNA_H-canaliculatus_F_contig1012.146.1|Name=mRNA_H-canaliculatus_F_contig1012.146.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3367bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1012:6991..10357- (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGGTACCGCAGCTGCAGTTCAAGGGGTGCGAACTGGATGCAATCAC
GTTGTCTTGGTGAGGATGCTGTAATTGCATCGAGAAACTGAGACTAGGGC
TGTTCAAAATCACCGCCCCTCTTCCATATACGGCCGTGTTCGGTTCTCTT
CTGAGAGCTTGAGACTCCTACTACCTGTACAGTAGTAGGACAGCAGGAAG
TCTTGAGACGCGCAGTCTTAGTCTAGCTCAATCGGAAACGGCAGTACAAC
AAGCTTGCAACAGTTGAGCCTGTGCAATCTACTGTCGACGATACGTGAGC
CGTGGCCCCTCGAGGTGGTTCACTCTTCACCTGGTCTCTTGCTTTCAGAG
AACAACCCCCGGCAAAAATATTTGAGGAAAATCCCCCGCCAATGATTGGC
TGGCCCTCTTCGATGTGACAATTTTCAATTTTCATGCATGTGTGGATATC
TGCCTCTCTTCTGATTTCCTGTGCAATAAACCTCGTCCGCAATTGTTCAC
TTTTCCAGGCAACGGACGGGAGACGCTGGCTACAAACTGGAGTTTCGGGA
GATTCTCGTGCCGGTGGGTGTGTATGTGCGTATGTGTGTTTGCATCAGAC
AGAACAGCATGATGATGGTCAAAGTGGTCCAAACAGCGTGCTCAAACTCT
GTTGCAACGTAGCGTCACACCTAGTCATGAATGTGCGCGGAGAAGCCGGG
GATGCCCGACGGTCGGTGTGCTGCAGCATGCAGACTTCACGATAGAGGCG
CATCCGTCTATTGTCAGTCTTGCTCATATATCATTCCAATTTTGAGGTTG
AAGAACTTGAAGTTAGGTCAACCGACGCGCTACTGTAGTGTTGATGAAAT
TGCGCACGAGAGTCGCTCTTGGCCTCCTATTATTGGAGTACACTGCACAC
TGTAGGAGGCAATGGAGTCTTCAGAAACATTTCATCTTGACACACACACA
CTTATACAACGTATTCAGAATTGGTCTGGAGTCTAGTGTAAAGTCGATAC
CCCCCAAGCATACTACTCGGAGGAGGAAAGTGAAGCACCTGGTACCTTGT
ACCTCATTTCCCCATGAGCAAAGTTCGTCTGCCGTACCTCTGCCGTTTGG
TTGTGTGACTGTGTTGTTTGTCGACGCTGGATGCTTGTTCTTTATTTTGG
TCAAGGGCCGTCGCTATCTCGCCTTGGCGAAGCCCCCATACCACATACCT
CCGTTTTGGCGAAACGCTTTACGGAAAACAACCATATTCGCTAACTCACG
CATTGTAGTGGTGAAGCGAATCGTGCCGCTTCCCGTTCAAATATGTGGGA
TTTTGTGCGGCAGTAGGCCTTCTGCCCAACCCGAAACACAAAAATGTCCA
TGCTGCTGCTGGGCATGAGATGTGCAATGTGCTCTGATCCGGTGGACACA
CATTTCCCGCCGACGATGATGCAGGATTGGGCGGGCTGTCGCTCGGAAAC
AGTAGCGCCTGCATCATCTTCTTCTCCTGAGACGACGATTACAGTCACCG
ACCTCAACCCCTCGTCTTCATATCTCTTCCGGCTCTACACCGTTGCAGCT
GACGGCCGAGAGGTTGGACCTGGACCAGAAGTTGCATTTGACACCGAAGG
TAAGGCCTGCTGTCGTGTGTCATTGCAGATGTCACGCAACATAGCGATTG
GGGGGAAGCACGGCACGAACCGGCCCACGAAACTTTGAAGGCAAATATTG
CCTTGAGCGGGAAGGCGCCCCTCGTCCCATGCCCGCGCCGCAGCAGCAGC
TGCTGCCACTTGCTGCTACTGGAACTTGTACTCCTTCTAGCGTCTACAGC
AGTATGCGTATGCGCTCGTGTGCGGTGGTACCATTGAACTCTGTCAAGAG
CAGCCGATTACTTAGGGACCCACCGGAGGCTATGGAATAACCCAACTGGC
GAGAAAGTGGCAAGGTAAAGTATTCCATGGACATTCGATGACAGAAACAT
AATTGCTAGGCTTCGCATAAATCTGCTTCGATACATAGATTTGTTGAGCA
AGATGGTGGACCGCATGATCCAGAGTGTCCCTTCGTGCACCTCAAGTATG
AGAGGCATCATTGGGGTTGTGCTGCTTAGTTTTCTTTCAACACGCTCCAG
ACGTGGGTTGCGATATGTCAAGAGAGATAGCTGGACCAATTCCTACCAAC
CATGACCCTTTGGCATTGAAAGTGTCGGGGAGGGGTGATTTGCCGACAAT
TCGTCGAAAGCAACAGCTGGAAACGCGTTACGAGCTCAAAAGTACGGAAG
AAGTACAGCCGTTGTCCATGACATCACTACCGGGGTTTTATGTTGAATAT
CTTTGGAAGCTTCGAGCACAACCCGCTGAAAGTTATGCCCTCTTGTTGCG
TTTCTTTGCTTAACGCTTCATCATTGTAATGCAGTTGTATCGTGCGCACC
GACGAATAAACCTTGCTGCATCATCTCCTGACGACTGGAGACCAAGCCCT
GGCGACTGTATGAGTTGGAAGCCAGAGGTGAAAATGTGGACACGAACAGG
GGGCGAACTACTTGCCGAAGGCGCACTACGGAGAGCGTCCAGGAGGGAGG
GGCGATCTGTCGGGGGAGATGGCTGCCAACCTTATTATGTTTATATTTTA
TTGAAAAGTGTTTAGAAGCAAGTGGAAATTAACAAGTTTTTAAGAAGGAC
AACCTGCGCGGATTGGGGGATGGAGGATATGAGGTTAGCAAAGGGAATGA
ACGCAAGAGTCGTAACCCTAAACCTACGTCAGTCCATTCCACCCCACGTC
AGTTCAATCACTCTCCTTGTCAGGCGTCCCCGGTTGTTGGTCATGAGGGT
TCCACCAAGATCGAAATGTGAACGCCAGAACGACACGTCAAACGTCAATA
ACCCGTTTGTTGTCTCCGTTGCTCGTCTTGTGGTCTTCTCGCCCGGTCTT
GTACGTACAGCGGCAAGGACTGGATCACCCATCACTTCTTGAGCGATGGC
TCACCGAGTTATCCATCGATCGGCGTTACAATGGTATTGAATAAATAGCG
CCCGGAGGCCGTATTCATGCGACATATTTATGTCTTGACATTCATGGTTC
AGAGAGAGATGGATCGTTGCTCATTAGCTTCCTTCGTCGGGGAATTTAGA
GAAAAGGTGTAAAAGCCGTGATCTTCATTGCTTTTTGTACCTTATTGCAC
GAAGCTACCATAACACAAGGCCAAAGGACTACTTGTATAACGTTCGTTTT
TGTCGCATCACACACAAACCTGAAAACCTTACTTCGTACCAGCTTGTAAG
AAAGTTGCGGGCCGCGATGAATCCGAGCAACATGGGATTAACATATCATC
AACGAACGTACTCCGGAGCGTATGGAATATACTGGGCTCCAAGTTTTCGT
ATTGCCAGGAAGATGTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1012:6991..10357-

>mRNA_H-canaliculatus_F_contig1012.146.1 ID=mRNA_H-canaliculatus_F_contig1012.146.1|Name=mRNA_H-canaliculatus_F_contig1012.146.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=672bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1012:6991..10357- (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGGTACCGCAGCTGCAGTTCAAGGGGTGCGAACTGGATGCAATCAC
GTTGTCTTGATGGAGGTACCGCAGCTGCAGTTCAAGGGGTGCGAACTGGA
TGCAATCACGTTGTCTTGGCAACGGACGGGAGACGCTGGCTACAAACTGG
AGTTTCGGGAGATTCTCGTGCCGGCAACGGACGGGAGACGCTGGCTACAA
ACTGGAGTTTCGGGAGATTCTCGTGCCGGATTGGGCGGGCTGTCGCTCGG
AAACAGTAGCGCCTGCATCATCTTCTTCTCCTGAGACGACGATTACAGTC
ACCGACCTCAACCCCTCGTCTTCATATCTCTTCCGGCTCTACACCGTTGC
AGCTGACGGCCGAGAGGTTGGACCTGGACCAGAAGTTGCATTTGACACCG
AAGGATTGGGCGGGCTGTCGCTCGGAAACAGTAGCGCCTGCATCATCTTC
TTCTCCTGAGACGACGATTACAGTCACCGACCTCAACCCCTCGTCTTCAT
ATCTCTTCCGGCTCTACACCGTTGCAGCTGACGGCCGAGAGGTTGGACCT
GGACCAGAAGTTGCATTTGACACCGAAGTTGTATCGTGCGCACCGACGAA
TAAACCTTGCTGCATCATCTCCTGATTGTATCGTGCGCACCGACGAATAA
ACCTTGCTGCATCATCTCCTGA
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