mRNA_H-canaliculatus_F_contig1165.1458.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1165.1458.1
Unique NamemRNA_H-canaliculatus_F_contig1165.1458.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1165.1458.1 vs. uniprot
Match: A0A6H5JY73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY73_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 1.950e-51
Identity = 106/174 (60.92%), Postives = 119/174 (68.39%), Query Frame = 1 
Query:  178 QKQHQSPPRFTVRPPSRSFDGRFTLRQCSPP-VPDWHGNVVTSSSAFDFSSSSNSGV-------ARGESGLQPCSGSDSDASTDAEVASLTHGRRLGTGAEGLLRMVSAPSRSRRGEPRIRDAESAVALFALLSPSTQITSSP----DQDDLQKKHGSGGDDCRVSSWGAETAA 663
            Q+ H+ PPR+T+RPPSRSFDG+FTLRQCSPP V + H NVV+SSS FDF               ARG   L  CSGSDSDAS DAEVASLT GRRLG+G EGL+RMV+AP++  R EPRIRDAESAVALFALLSPST IT SP     Q    K+      DC  SSW  ET A
Sbjct:    9 QQAHRPPPRYTIRPPSRSFDGKFTLRQCSPPSVAELHANVVSSSSNFDFXXXXXXXXXXXXXXXARG---LAACSGSDSDASMDAEVASLTSGRRLGSGVEGLVRMVNAPTKLPRAEPRIRDAESAVALFALLSPSTHITPSPVQGRHQQQTTKQQLDHLGDCGRSSWDTETGA 179
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1165.1458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JY73_9PHAE1.950e-5160.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1165contigH-canaliculatus_F_contig1165:28606..29268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-26_006560.1
Exons1
Model size663
Cds size657
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928857.2234588-UTR-H-canaliculatus_F_contig1165:28605..286111622928857.2234588-UTR-H-canaliculatus_F_contig1165:28605..28611Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1165 28606..28611 +
1696845591.1709228-UTR-H-canaliculatus_F_contig1165:28605..286111696845591.1709228-UTR-H-canaliculatus_F_contig1165:28605..28611Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1165 28606..28611 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928857.2343707-CDS-H-canaliculatus_F_contig1165:28611..292681622928857.2343707-CDS-H-canaliculatus_F_contig1165:28611..29268Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1165 28612..29268 +
1696845591.186399-CDS-H-canaliculatus_F_contig1165:28611..292681696845591.186399-CDS-H-canaliculatus_F_contig1165:28611..29268Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1165 28612..29268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1165.1458.1prot_H-canaliculatus_F_contig1165.1458.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1165 28612..29268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1165.1458.1

>prot_H-canaliculatus_F_contig1165.1458.1 ID=prot_H-canaliculatus_F_contig1165.1458.1|Name=mRNA_H-canaliculatus_F_contig1165.1458.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=219bp
MSWDTRSFGPQEPLETTLCQPASIPGSLHRQDGADRRLSGAPATGAPAAS
FTTVSQQQKQHQSPPRFTVRPPSRSFDGRFTLRQCSPPVPDWHGNVVTSS
SAFDFSSSSNSGVARGESGLQPCSGSDSDASTDAEVASLTHGRRLGTGAE
GLLRMVSAPSRSRRGEPRIRDAESAVALFALLSPSTQITSSPDQDDLQKK
HGSGGDDCRVSSWGAETAA
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mRNA from alignment at H-canaliculatus_F_contig1165:28606..29268+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1165.1458.1 ID=mRNA_H-canaliculatus_F_contig1165.1458.1|Name=mRNA_H-canaliculatus_F_contig1165.1458.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=663bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1165:28606..29268+ (Hapterophycus canaliculatus Oshoro5f female)
CCTACAATGAGCTGGGACACGCGTTCTTTCGGCCCACAAGAACCTCTCGA
GACGACTCTGTGCCAGCCGGCCTCGATTCCAGGGTCTCTGCACCGACAGG
ACGGCGCGGACCGGAGATTGTCAGGGGCACCGGCAACAGGAGCACCAGCG
GCAAGCTTCACCACGGTCAGCCAGCAGCAGAAGCAGCACCAGTCGCCTCC
GCGCTTTACCGTCCGGCCTCCGAGCAGATCATTCGACGGACGATTCACAC
TTCGCCAATGTTCTCCTCCCGTTCCCGACTGGCACGGAAACGTAGTGACT
AGCAGCTCCGCCTTCGACTTTTCGAGCAGTTCAAACAGCGGCGTGGCGAG
AGGGGAGAGTGGGCTGCAGCCCTGCAGCGGGAGCGACAGCGACGCTTCCA
CGGACGCGGAGGTGGCGTCGCTCACCCATGGGCGGCGCCTCGGGACTGGC
GCGGAGGGCCTGCTGCGAATGGTGAGCGCGCCGTCAAGAAGCAGGCGCGG
AGAACCTCGGATCAGAGATGCCGAGTCCGCTGTCGCGCTGTTCGCGCTCC
TTTCCCCCTCGACCCAGATCACGTCCTCCCCCGACCAAGACGACCTCCAA
AAGAAGCATGGCAGCGGCGGGGACGACTGCAGGGTGTCGAGCTGGGGTGC
GGAGACAGCAGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1165:28606..29268+

>mRNA_H-canaliculatus_F_contig1165.1458.1 ID=mRNA_H-canaliculatus_F_contig1165.1458.1|Name=mRNA_H-canaliculatus_F_contig1165.1458.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1314bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1165:28606..29268+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCTGGGACACGCGTTCTTTCGGCCCACAAGAACCTCTCGAGACGAC
TCTGTGCCAGCCGGCCTCGATTCCAGGGTCTCTGCACCGACAGGACGGCG
CGGACCGGAGATTGTCAGGGGCACCGGCAACAGGAGCACCAGCGGCAAGC
TTCACCACGGTCAGCCAGCAGCAGAAGCAGCACCAGTCGCCTCCGCGCTT
TACCGTCCGGCCTCCGAGCAGATCATTCGACGGACGATTCACACTTCGCC
AATGTTCTCCTCCCGTTCCCGACTGGCACGGAAACGTAGTGACTAGCAGC
TCCGCCTTCGACTTTTCGAGCAGTTCAAACAGCGGCGTGGCGAGAGGGGA
GAGTGGGCTGCAGCCCTGCAGCGGGAGCGACAGCGACGCTTCCACGGACG
CGGAGGTGGCGTCGCTCACCCATGGGCGGCGCCTCGGGACTGGCGCGGAG
GGCCTGCTGCGAATGGTGAGCGCGCCGTCAAGAAGCAGGCGCGGAGAACC
TCGGATCAGAGATGCCGAGTCCGCTGTCGCGCTGTTCGCGCTCCTTTCCC
CCTCGACCCAGATCACGTCCTCCCCCGACCAAGACGACCTCCAAAAGAAG
CATGGCAGCGGCGGGGACGACTGCAGGGTGTCGAGCTGGGGTGCGGAGAC
AGCAGCGATGAGCTGGGACACGCGTTCTTTCGGCCCACAAGAACCTCTCG
AGACGACTCTGTGCCAGCCGGCCTCGATTCCAGGGTCTCTGCACCGACAG
GACGGCGCGGACCGGAGATTGTCAGGGGCACCGGCAACAGGAGCACCAGC
GGCAAGCTTCACCACGGTCAGCCAGCAGCAGAAGCAGCACCAGTCGCCTC
CGCGCTTTACCGTCCGGCCTCCGAGCAGATCATTCGACGGACGATTCACA
CTTCGCCAATGTTCTCCTCCCGTTCCCGACTGGCACGGAAACGTAGTGAC
TAGCAGCTCCGCCTTCGACTTTTCGAGCAGTTCAAACAGCGGCGTGGCGA
GAGGGGAGAGTGGGCTGCAGCCCTGCAGCGGGAGCGACAGCGACGCTTCC
ACGGACGCGGAGGTGGCGTCGCTCACCCATGGGCGGCGCCTCGGGACTGG
CGCGGAGGGCCTGCTGCGAATGGTGAGCGCGCCGTCAAGAAGCAGGCGCG
GAGAACCTCGGATCAGAGATGCCGAGTCCGCTGTCGCGCTGTTCGCGCTC
CTTTCCCCCTCGACCCAGATCACGTCCTCCCCCGACCAAGACGACCTCCA
AAAGAAGCATGGCAGCGGCGGGGACGACTGCAGGGTGTCGAGCTGGGGTG
CGGAGACAGCAGCG
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