mRNA_H-canaliculatus_F_contig1165.1454.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1165.1454.1
Unique NamemRNA_H-canaliculatus_F_contig1165.1454.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1165.1454.1 vs. uniprot
Match: D7FWI2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWI2_ECTSI)

HSP 1 Score: 467 bits (1201), Expect = 4.660e-155
Identity = 386/574 (67.25%), Postives = 409/574 (71.25%), Query Frame = 3 
Query:   30 MTKTTRRERRKRAIASGAAEARGVSKVKAKKHVAPGSNHSSKNQAGPGLR--VGKDGKQLAKRPLARKQQRDGGKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQPLVVDELVATIQEHDQFFSRMLDMIPEHLVLPAKEVTESSYASKYMKNKKGEAPQQSKKEESKKNKRARYAADNQKTLLERQQERAKVGEDGAPADDTGEGASDDGGGDE-----------GLEAAAEQDGLQGEVLRGKNMDVASMDALKQRIEERIKKFQEKRTAAEGSRRAKTAAKXXXXXXXXXENKRKGAKAKKKGREGAIAAAAAAAKGGVAEAAAAGEVNGITAGANXXXXXXXXXXXXXXXXXXXXSHAEAPTPQLPPLPTVEDVGDIEFSGLRGVVGDGSGGNRGKHGLPKTGAPGSKMKRLHGLLAAAEEKKQRLAGLRQTEEGKLKAREEGWADAIRVAAGAEVKDNPAALKKMIKRKEKDKAKSAAKWDDRLSGQKXXXXXXXXXXXENLNRRXXXXXXXXXXXGETDKAXXXXXXXXD--GKRQRRAGFEGKKQDFINKERPNKAGAQDG 1706
            MTK+TRR+RRK+AIASGAA+ARGVSKV  K+  A  S               VGK GK+L K               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +  V DELVATIQEHD+FFSRMLDMIPE+LVL AKEV ESSYASKYMKNKKGEAP+QSKKEESKKNKRARYAADNQKTLLE+QQERAK GEDG  AD          G D+           GL+AAAEQDGLQ EVLRGK+MDVASMDALK+RIEERIK FQEKRTAAEGSRRAKTA  XXXXXXXXX                                            +   XXXXXXXXXX        SHA    PQLPPLPTVEDVGDIEFSGLRGV+GDGSG NRGKHGLPK GAPGSKMKRLHGLLAAAEEKKQRLAGLRQTE GK KA+EEGWADAIRVA GAE+KDNPAALKKMIKRKEK+KAKSAAKWD+RLSGQ+ XXXXXXXXX ENLNRR           GETDKA           GKRQRRAGFEGKKQDFINKERP+KAG Q G
Sbjct:    1 MTKSTRRDRRKKAIASGAAQARGVSKVMTKERTASTSXXXXXXXXXXXXXXLVGKGGKELVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRES-VEDELVATIQEHDEFFSRMLDMIPENLVLRAKEVAESSYASKYMKNKKGEAPKQSKKEESKKNKRARYAADNQKTLLEKQQERAKAGEDGGDAD---------AGSDKDXXXXXXXXXGGLQAAAEQDGLQSEVLRGKSMDVASMDALKKRIEERIKVFQEKRTAAEGSRRAKTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------XXXXXXXXXXXXXXSAEAXXXXXXXXXXGAKVEANGSHAPVAKPQLPPLPTVEDVGDIEFSGLRGVLGDGSG-NRGKHGLPKVGAPGSKMKRLHGLLAAAEEKKQRLAGLRQTETGKEKAKEEGWADAIRVAGGAEIKDNPAALKKMIKRKEKEKAKSAAKWDERLSGQRKXXXXXXXXXEENLNRRKKGGPAV----GETDKAASGGDAASGQGGKRQRRAGFEGKKQDFINKERPSKAGEQGG 548
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BLAST of mRNA_H-canaliculatus_F_contig1165.1454.1 vs. uniprot
Match: A0A1E7FHH0_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FHH0_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 7.810e-13
Identity = 61/153 (39.87%), Postives = 77/153 (50.33%), Query Frame = 3 
Query: 1239 SKMKRLHGLLAAAEEKKQRLAGLRQT--EEGKLKAREEGWADAIRVAAGAEVKDNPAALKKMIKRKEKDKAKSAAKWDDRLSGQKXXXXXXXXXXXENLNRRXXXXXXXXXXXGET------DKAXXXXXXXXDGKRQRRAGFEGKKQDFINK 1673
            SK K L  LLA AE KKQRL  L+++   E K KA    W + I+ A G  VKD+PA +KK+++RK   K KSA  W +R+   K            NLN+R            +       DK         DG+R  RAGFEGKKQDF+NK
Sbjct:  257 SKSKNLEKLLADAESKKQRLEELKKSGKAEDKEKADNIVWGNVIKEATGERVKDDPAKIKKVLQRKAAKKKKSAKAWKNRMDTTKQNMDERQNIRNHNLNQRKAGGQTGANLSSKRIELEGDDKNGGPTKQKNDGRRLSRAGFEGKKQDFLNK 409
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BLAST of mRNA_H-canaliculatus_F_contig1165.1454.1 vs. uniprot
Match: A0A1Z5JT82_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JT82_FISSO)

HSP 1 Score: 76.6 bits (187), Expect = 2.520e-11
Identity = 60/153 (39.22%), Postives = 77/153 (50.33%), Query Frame = 3 
Query: 1239 SKMKRLHGLLAAAEEKKQRLAGLRQ-TEEGKLKAREEGWADAIRVAAGAEVKDNPAALKKMIKRKEKDKAKSAAKWDDRLSGQKXXXXXXXXXXXENLNRRXXXXXXXXXXXGETDKAXXXXXXXXDGKRQRRAGFEGKKQDFINKERPNKAG 1694
            SK K L  +LA AE K+Q+L  L++ TEE K KA E  W+D ++ A G  VK +P+ +KK++KRK   KAKS   W  RL   K            NL+ R             + K          GKR  RAGFEGKK+DF+N   P K G
Sbjct:  223 SKTKNLKKMLADAEAKQQKLEQLKKGTEEEKAKAMEMQWSDTLKEADGQRVKSDPSKIKKVLKRKAAKKAKSQKAWKTRLEQVKEKKDERQTIRNHNLDARKKGGAIGANL---SKKKIVKDGDQDSGKRLSRAGFEGKKRDFLNS--PKKKG 370
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BLAST of mRNA_H-canaliculatus_F_contig1165.1454.1 vs. uniprot
Match: A0A448ZTA8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZTA8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.820e-11
Identity = 55/148 (37.16%), Postives = 73/148 (49.32%), Query Frame = 3 
Query: 1239 SKMKRLHGLLAAAEEKKQRLAGLRQTE--EGKLKAREEGWADAIRVAAGAEVKDNPAALKKMIKRKEKDKAKSAAKWDDRLSGQKXXXXXXXXXXXENLNRRXXXXXXXXXXXGET-DKAXXXXXXXXDGKRQRRAGFEGKKQDFINK 1673
            SK K L  +LA AE KK+RL  L+Q++  E K KA    W D +R A G  VKD+PA +KK +KR+   K KS+  W  R+   +            NL +R            +  +           G+R  RAGFEGKKQDF+NK
Sbjct:  203 SKSKNLEKMLADAESKKKRLEELKQSDKQEDKEKAASIEWGDTLREATGERVKDDPAKIKKALKRRAAKKLKSSKAWKTRMESAQSKMDERQKIRNHNLTKRKLGGSAGANLSSKRIETEAEADGKKKTGRRLSRAGFEGKKQDFLNK 350
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BLAST of mRNA_H-canaliculatus_F_contig1165.1454.1 vs. uniprot
Match: K8YSR8_NANGC (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YSR8_NANGC)

HSP 1 Score: 75.1 bits (183), Expect = 1.470e-10
Identity = 55/142 (38.73%), Postives = 72/142 (50.70%), Query Frame = 3 
Query: 1248 KRLHGLLAAAEEKKQRLAGLRQTEEGKLKAREEGWADAIRVAAGAEVKDNPAALKKMIKRKEKDKAKSAAKWDDRLSGQKXXXXXXXXXXXENLNRRXXXXXXXXXXXGETDKAXXXXXXXXDGKRQRRAGFEGKKQDFINK 1673
            K L GLL  AEEK++RL  L+ TE GK +A    W DA++ A G ++ DNP  LKK IK+KEK    S  KW DR +  +            NL +R            + +K          G RQ RAGFEGK+ +F+NK
Sbjct:  328 KNLVGLLKKAEEKEKRLKELQATEGGKEEASALLWKDALKSAHGEKILDNPKLLKKAIKKKEKAXXXSKEKWGDRTAKIEAAEREKQGRREANLKKRKLGGVEGCLAGSKAEK----DNKEKSGGRQGRAGFEGKRAEFLNK 465
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BLAST of mRNA_H-canaliculatus_F_contig1165.1454.1 vs. uniprot
Match: A0A7S4UJP3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UJP3_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.800e-10
Identity = 64/194 (32.99%), Postives = 93/194 (47.94%), Query Frame = 3 
Query: 1119 PLPTVEDVGDIEFSGLRGVVGDGSGGNRGKHGLPKTGAPGSKMKRLHGLLAAAEEKKQRLAGLRQ-TEEGKLKAREEGWADAIRVAAGAEVKDNPAALKKMIKRKEKDKAKSAAKWDDRLSGQKXXXXXXXXXXXENLNRRXXXXXXXXXXXGETDKAXXXXXXXXDGKRQRR---------AGFEGKKQDFIN 1670
            P    +D+  I+F G+ G+        +  +   K+ +  +K K L  LL  AE+K+QRL  L+Q  EE K KA +  W  A++ A+G +V+++PA +KK +KRK K K KSA  W  R    +            N+N+R            +            DGK++RR         AGFEGKKQDFIN
Sbjct:  245 PATVKDDMDGIDFGGISGLA------TKKHYEDNKSLSNVNKKKSLERLLEEAEKKQQRLKALKQGDEEDKAKAAKIEWGIALKEASGEKVRNDPAMIKKAMKRKAKKKVKSAEAWKARTDQLRDKIDERQKIRTHNINQRKQGGMAGANL-SKKRIVEDEDKKTEDGKKKRRLGPHAEKSRAGFEGKKQDFIN 431
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BLAST of mRNA_H-canaliculatus_F_contig1165.1454.1 vs. uniprot
Match: B5Y420_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y420_PHATC)

HSP 1 Score: 71.6 bits (174), Expect = 1.340e-9
Identity = 53/147 (36.05%), Postives = 71/147 (48.30%), Query Frame = 3 
Query: 1239 SKMKRLHGLLAAAEEKKQRLAGLR--QTEEGKLKAREEGWADAIRVAAGAEVKDNPAALKKMIKRKEKDKAKSAAKWDDRLSGQKXXXXXXXXXXXENLNRRXXXXXXXXXXXGETDKAXXXXXXXXDGKRQRRAGFEGKKQDFINK 1673
            SK K L  +LA AE K++R+  L+  + E  + +AR+  W D ++ A G  VKD+P  LKK +KRKE  KAKS   W  R+                NL+ R               K          G+R  RAGFEG+KQDF+NK
Sbjct:  249 SKTKNLERMLADAEAKRERIEALKACKDESAQAEARQILWKDTLQEADGQRVKDDPMKLKKALKRKEVKKAKSKKAWKSRMENVSDAAQSRQKIRQHNLSARKAGGQSG----ANLSKKKIADAGEDGGRRLSRAGFEGRKQDFLNK 391
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BLAST of mRNA_H-canaliculatus_F_contig1165.1454.1 vs. uniprot
Match: A0A7S4ATI7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ATI7_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.560e-9
Identity = 55/150 (36.67%), Postives = 75/150 (50.00%), Query Frame = 3 
Query: 1239 SKMKRLHGLLAAAEEKKQRLAGLRQTEE--GKLKAREEGWADAIRVAAGAEVKDNPAALKKMIKRKEKDKAKSAAKWDDRLSGQKXXXXXXXXXXXENLNRRXXXXXXXXXXXG---ETDKAXXXXXXXXDGKRQRRAGFEGKKQDFINK 1673
            SK K L  +LA AE KK+RL  L+++++   K KA    W  A++ A G  VKD+PA +KK +KRK   K KS+  W  R+   +            NL++R               E +K          G+R  RAGFEGKKQDF+NK
Sbjct:  295 SKSKNLEKMLADAESKKKRLEELKKSDKQTDKEKAANIEWGHALKEATGERVKDDPAKIKKALKRKAAKKLKSSKAWKTRIESTQSKMDERQKIRNHNLSKRKVGGSAGANLSSKRIEVEKEGDDKKKG--GRRLSRAGFEGKKQDFLNK 442
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BLAST of mRNA_H-canaliculatus_F_contig1165.1454.1 vs. uniprot
Match: A0A7S4JVM8_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JVM8_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 8.790e-9
Identity = 63/172 (36.63%), Postives = 82/172 (47.67%), Query Frame = 3 
Query: 1242 KMKRLHGLLAAAEEKKQRLAGLRQT--EEGKLKAREEGWADAIRVAAGAEVKDNPAALKKMIKRKEKDKAKSAAKWDDRLSGQKXXXXXXXXXXXENLNRRXXXXXXXXXXXG---ETDKAXXXXXXXXDG------KRQR--------RAGFEGKKQDFINKERPNKAGAQ 1700
            K K L  LLA AE+K +RL  L+ +  EE K KA+   W D ++ A G  ++D+P+ +KK +KRK K K KS   W DR    +            NL++R               +TD    XXX   DG      KR R        RAGFEG+K DFIN  +  KA AQ
Sbjct:  283 KKKSLDRLLAEAEKKSERLKQLKASTDEEDKAKAKSIEWGDTLKEATGQRMRDDPSLIKKAMKRKAKKKEKSGKAWRDRTEATREKMDERQKIRGHNLDQRKVGGAAGANLSKRRIKTDDEDGXXXKGKDGGAEDRKKRPRLGPHSGKARAGFEGRKADFINSGKKEKAAAQ 454
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BLAST of mRNA_H-canaliculatus_F_contig1165.1454.1 vs. uniprot
Match: A0A7S2VZU1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VZU1_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.310e-8
Identity = 49/147 (33.33%), Postives = 71/147 (48.30%), Query Frame = 3 
Query: 1263 LLAAAEEKKQRLAGLRQ-TEEGKLKAREEGWADAIRVAAGAEVKDNPAALKKMIKRKEKDKAKSAAKWDDRLSGQKXXXXXXXXXXXENLNRRXXXXXXXXXXXGET-DKAXXXXXXXXDGKRQRR---------AGFEGKKQDFIN 1670
            LLA A++KK RL  L+  T+E K KA+   W D ++ A G +   +P+ LKK IKR+ K K KS   W  R+   K            N+++R            +  +++        DGK++ R         AGFEGKKQ+FIN
Sbjct:    3 LLALAQKKKDRLKELKAGTDEDKEKAKRIDWGDTLKAATGEKTNSDPSLLKKAIKRRAKQKTKSGEAWKVRIDSVKDKMDERQKIRSHNIDKRKLGGAIGANLSNKRIEESEAEKEAAGDGKKRARLGPHSTKGRAGFEGKKQEFIN 149
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1165.1454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FWI2_ECTSI4.660e-15567.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1E7FHH0_9STRA7.810e-1339.87Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A1Z5JT82_FISSO2.520e-1139.22Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A448ZTA8_9STRA3.820e-1137.16Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
K8YSR8_NANGC1.470e-1038.73Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S4UJP3_9STRA3.800e-1032.99Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
B5Y420_PHATC1.340e-936.05Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S4ATI7_9STRA1.560e-936.67Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S4JVM8_9STRA8.790e-936.63Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S2VZU1_9STRA1.310e-833.33Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1165contigH-canaliculatus_F_contig1165:8715..13831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score478.0
Seed ortholog evalue6.4e-132
Seed eggNOG ortholog2880.D7FWI2
Preferred nameSURF6
KEGG koko:K10848
KEGG Pathwayko03420,ko03460,map03420,map03460
GOsGO:0001652,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0042274,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044452,GO:0044464,GO:0065003,GO:0070013,GO:0070925,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1990904
EggNOG free text desc.ribosomal large subunit biogenesis
EggNOG OGsKOG2885@1,KOG2885@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal RNA-processing protein 14/surfeit locus protein 6, C-terminal domain
Ec32 orthologEc-26_006520.1
Exons7
Model size1826
Cds size1797
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1165.1454.1prot_H-canaliculatus_F_contig1165.1454.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1165 8744..13831 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928856.8092866-UTR-H-canaliculatus_F_contig1165:8714..87431622928856.8092866-UTR-H-canaliculatus_F_contig1165:8714..8743Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1165 8715..8743 +
1696845590.86915-UTR-H-canaliculatus_F_contig1165:8714..87431696845590.86915-UTR-H-canaliculatus_F_contig1165:8714..8743Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1165 8715..8743 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928856.8209324-CDS-H-canaliculatus_F_contig1165:8743..92111622928856.8209324-CDS-H-canaliculatus_F_contig1165:8743..9211Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1165 8744..9211 +
1696845590.880239-CDS-H-canaliculatus_F_contig1165:8743..92111696845590.880239-CDS-H-canaliculatus_F_contig1165:8743..9211Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1165 8744..9211 +
1622928856.8343654-CDS-H-canaliculatus_F_contig1165:9863..99711622928856.8343654-CDS-H-canaliculatus_F_contig1165:9863..9971Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1165 9864..9971 +
1696845590.8924057-CDS-H-canaliculatus_F_contig1165:9863..99711696845590.8924057-CDS-H-canaliculatus_F_contig1165:9863..9971Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1165 9864..9971 +
1622928856.844886-CDS-H-canaliculatus_F_contig1165:10603..107861622928856.844886-CDS-H-canaliculatus_F_contig1165:10603..10786Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1165 10604..10786 +
1696845590.9009013-CDS-H-canaliculatus_F_contig1165:10603..107861696845590.9009013-CDS-H-canaliculatus_F_contig1165:10603..10786Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1165 10604..10786 +
1622928856.8597643-CDS-H-canaliculatus_F_contig1165:11190..114191622928856.8597643-CDS-H-canaliculatus_F_contig1165:11190..11419Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1165 11191..11419 +
1696845590.9097564-CDS-H-canaliculatus_F_contig1165:11190..114191696845590.9097564-CDS-H-canaliculatus_F_contig1165:11190..11419Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1165 11191..11419 +
1622928856.8701751-CDS-H-canaliculatus_F_contig1165:12037..121741622928856.8701751-CDS-H-canaliculatus_F_contig1165:12037..12174Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1165 12038..12174 +
1696845590.919455-CDS-H-canaliculatus_F_contig1165:12037..121741696845590.919455-CDS-H-canaliculatus_F_contig1165:12037..12174Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1165 12038..12174 +
1622928856.8802834-CDS-H-canaliculatus_F_contig1165:12695..131631622928856.8802834-CDS-H-canaliculatus_F_contig1165:12695..13163Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1165 12696..13163 +
1696845590.9280226-CDS-H-canaliculatus_F_contig1165:12695..131631696845590.9280226-CDS-H-canaliculatus_F_contig1165:12695..13163Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1165 12696..13163 +
1622928856.8906655-CDS-H-canaliculatus_F_contig1165:13627..138311622928856.8906655-CDS-H-canaliculatus_F_contig1165:13627..13831Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1165 13628..13831 +
1696845590.9386773-CDS-H-canaliculatus_F_contig1165:13627..138311696845590.9386773-CDS-H-canaliculatus_F_contig1165:13627..13831Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1165 13628..13831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1165.1454.1

>prot_H-canaliculatus_F_contig1165.1454.1 ID=prot_H-canaliculatus_F_contig1165.1454.1|Name=mRNA_H-canaliculatus_F_contig1165.1454.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=599bp
MTKTTRRERRKRAIASGAAEARGVSKVKAKKHVAPGSNHSSKNQAGPGLR
VGKDGKQLAKRPLARKQQRDGGKAAQNRTPGGGTGGRKKKRPRSEIEEDG
GEEEEEDSQPLVVDELVATIQEHDQFFSRMLDMIPEHLVLPAKEVTESSY
ASKYMKNKKGEAPQQSKKEESKKNKRARYAADNQKTLLERQQERAKVGED
GAPADDTGEGASDDGGGDEGLEAAAEQDGLQGEVLRGKNMDVASMDALKQ
RIEERIKKFQEKRTAAEGSRRAKTAAKRSAQNATKRENKRKGAKAKKKGR
EGAIAAAAAAAKGGVAEAAAAGEVNGITAGANGTGKAASAKKVKGAKVDA
NGSHAEAPTPQLPPLPTVEDVGDIEFSGLRGVVGDGSGGNRGKHGLPKTG
APGSKMKRLHGLLAAAEEKKQRLAGLRQTEEGKLKAREEGWADAIRVAAG
AEVKDNPAALKKMIKRKEKDKAKSAAKWDDRLSGQKKEQSKRQDKREENL
NRRKRGGGGAAAAAGETDKAGAAAGAGGDGKRQRRAGFEGKKQDFINKER
PNKAGAQDGGGGRGGGGRGGRGRGGGGGRDGGGRGRGGGRGGGGRGRG*
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mRNA from alignment at H-canaliculatus_F_contig1165:8715..13831+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1165.1454.1 ID=mRNA_H-canaliculatus_F_contig1165.1454.1|Name=mRNA_H-canaliculatus_F_contig1165.1454.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5117bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1165:8715..13831+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCGCACAATCAGGGCAGGTCAACAACCATGACCAAGACCACTCGACGT
GAGCGTCGTAAGAGAGCGATCGCTTCTGGGGCCGCAGAGGCTCGAGGCGT
GTCAAAAGTGAAGGCGAAGAAACACGTTGCGCCAGGTTCAAACCACAGCT
CGAAGAACCAAGCAGGTCCAGGTCTCCGCGTTGGAAAGGATGGTAAGCAG
CTCGCCAAGCGCCCCCTTGCACGAAAGCAGCAGCGGGATGGCGGGAAAGC
TGCGCAAAACAGAACTCCTGGCGGGGGTACAGGCGGGAGAAAAAAAAAGC
GACCACGGAGCGAGATAGAAGAAGACGGTGGAGAAGAGGAGGAGGAGGAC
TCTCAACCGCTGGTGGTTGACGAGCTTGTGGCCACCATTCAGGAGCATGA
CCAGTTTTTCTCGAGGATGCTCGACATGATTCCGGAGCACCTGGTACTCC
CGGCCAAGGAAGTGACAGAATCTTCGTACGCCAGCAAGTACATGAAGGTA
TGAGAGAGAGAGGTCCAGAAACGGGTTCGTGGCAAAAGCAGCGGTAGAGA
CCCTGCAGACGTCCGAGTTATGGCTTATGTCTCCGACAGATAACCTGGCG
GCCTCCTGACCTGACCCCTATCGTGTTGTGAATCTGTACTACTGCTGTAC
TTAAATGTTCATCGGTTGCCCTCACTACTTGGGTACAACGCCCCCACGCT
GTCCACGAGGAAAGTCGTTCGCGTGTTCGTCGAAGAGATCAGGCGCCGGC
TTGGATCGGCTTGGTACAACGACGTCGGTGCCAAGTGCATCTTTTGTCTC
CCGGGGGTGGACCGCGAGTGCCTCCCAGATGCCAGACCGACCAACCTCAA
GCGCGCTTTGTTCCCGAGACCTATTTTCTCCGCTCGGACCTGCACCCTCA
CACACCGGCCCAACCTTGTTGCGAGCCTTTCGCGCGATTCTCAAGCCCGG
CGAGCCCCGAGCTTATCCTAGGCCGATTCGCAGCTTCTTTTTGCTCACGA
TTGGCGTGGCGAGGCAATCGGCCTATTCCGTCGCACACCTACCGCCCCGC
ACCGCCCAGCACCGACCCCCCTCCCCCCCCGGGTTTCCTTACACTCACCC
TGCCGTCGGTCGGTTGATCTCCTCAATCCCCCTCCGTGGTATGCAACAGA
ACAAGAAGGGAGAGGCGCCGCAGCAGTCAAAGAAGGAGGAGTCCAAGAAG
AATAAGCGTGCGCGCTATGCCGCCGATAATCAGAAGACGCTGCTCGAGAG
GCAGCAGGTGAACGCCGTTTGCTTGGGTCAAATGCTTGTTGGCAAAAACA
CGCTGCTGCCCCATTCGTCGGGTGCCGTGTCTGGCGCTCTCCCAGTGCAC
GGCCGGCCGTCACAGCCGGTTTGACTGCTCCGTGCTTCCTTCGGTCGTGC
CAAGCCAGGATCTGCAGCAGACGGTAGTTGTGCTGGTCGTCGTACTCGGC
CAGTGTTCGTCACAGCAACTCATCGCCGAGAGGCGATCTATCACCCGAGC
AGGTCCCCCCCTCACACCTTCGAGATGCCTCCGGCTACTGCGGCCGGTTT
TTTGCCCTGTGGATCGCAGCCAGCCAATAAGAAAACGATTTTCACCATGC
GGACGGCCTCTCGCAGGCACGCTCATCCGCGATGCAGGCCTTTTGCCGAG
GGCTTCCGCGGTTCAGTAGGCTGGTTCACAAGTGGATTGCCTCACAGCGA
AAACGCGCACAAACAACAAGCGGGACGAAAGCAGTCTGCATCCGAACGCC
CCTCCATCCAGTGCGCCACATTCCCGTGACTCGTGCTTCGCGACCCGCTC
TCGCCGAGAAAATATCGCAACATGCCATCGCCCAACTTGAAACGCTCCCT
GCTCCTCGACGGAACGGCCACGCGTCGGGCAAACGAAAGGAACGCGCCAA
GGTTGGGGAGGACGGGGCTCCTGCCGACGACACCGGCGAGGGGGCTAGCG
ACGACGGCGGCGGCGACGAGGGGCTCGAGGCGGCGGCGGAGCAGGACGGG
CTCCAGGGCGAGGTGCTGAGGGGCAAGAACATGGACGTTGCGTCCATGGA
TGCCCTCAAGCAGCGGATAGAGGTGACCCTTGATGCGTGTTGTCTTGTTA
GTTCGTTGTAGGCACACCGAGGCGTGAGTTTCTCGCTCGTGCCACCAATC
CAGGCCCGCTCCGAACCTTCGCGGGTACTTCCCGACTGTCTCTAAGGCGG
CGTTCTTTTGGGCGAAACCGTAACGTTGTTAACGCTCGTAGCGACAGCTC
GAAGCACCTACGCGGTGCCGCAACATTGAACTCGCTTTTTGCCTCCGCGA
GGCAAGAGTGAACCGCCAGATCGGAGCCATTCTCCGTCACCTCCGTCCCC
GTAGTATCGTTGCTTCGTTGTATCACTCTTGTCGAGCTATTTTTGACGCA
CTCCCCCTCTTCTTTCTCCTGCCCTTCGCGCCCGACTCGTTCGCGCCGCT
CTGTTTTTCTCTCGACCCGTGTCCAGGAGCGCATCAAGAAGTTCCAGGAG
AAAAGAACGGCCGCTGAGGGGAGCCGTAGAGCAAAGACCGCCGCCAAGCG
GAGCGCTCAGAACGCCACCAAGAGGGAGAACAAGCGGAAGGGCGCCAAGG
CGAAGAAGAAGGGGAGGGAGGGCGCCATCGCCGCCGCCGCCGCCGCCGCG
AAGGGCGGGGTGGCAGAGGCCGCGGCGGCCGGAGAAGTCAATGGGATCAC
GGCAGGTGGGATATCAGAAAATGGTGGATGGAAGATGAGAAGATGTGGGA
GGGGGGCGTGGTAATTGTTTGCGGGTTCGAGCAAAATCTGTTGGCGGCCA
CTAGCGTGCTTTCGAGACGTACGTGAACACGTGTGTCACCAACGGCTGGT
ACAACAAAGGCTCACTCGGCGCCTCAATTACGGCGAAGTACCGAAATAGG
CCCTTTGCATAGACTTGTATCGCCCGCCACCTTGTCTCATCGGACACACA
CACGGCACGTTCTCCCACCATGCTGAACCCTCACTGTGAGGAGTTCAACA
CAATCCTCCCGAGTCGCAATTAATGTCGTCTCAGAGGAGGTTTTTCGTTT
GGTGTTCCAGTAGTCGCCTCTTTTTGCTGAAAACCTATCGTCGATTTGGT
TCCGCGCACGTGTCTTTGTCCGCATCTTTTCGGAGCGAAAAGTCGCCAGC
GAAACCAGACCCTATTCTCTCTCGAGTGGCTCCTGCGCCGTCAAGATTTC
TTTTGCGGTGCTTCAGCTTGTCCTGGAATGCCGCTGCAGGCCATCGCTCG
CGTGATTCTCTAAACACTGTCTTCGCCGGTGTATACTCTGCTTTTTCGTG
GAACCTTGTTCTTTTGCTCCTAGGCGCGAACGGCACCGGCAAAGCTGCTT
CCGCGAAGAAGGTCAAGGGGGCCAAGGTGGACGCCAACGGGTCGCACGCT
GAAGCGCCGACGCCGCAGCTGCCTCCGCTGCCTACCGTGGAGGATGTCGG
AGATATCGAGGTGAGCTGGCTTGCTTCTAGTCTTGCTGCTGCTGCGGCTG
CTGCTGCGGTTGTTGTTTGGACGCGTCAGACGCACGAACTGACCACGCTT
TCCTTTCTCTCCATATCACAGGTAGATCGGCACGAACTGGCTGGTTGATC
GAGATTTCAGCCTGCTTGATCGCTCATGACTATGGGGTGGAGTACACTCA
AAGTTTCCATGCACTAGGCACGCTTTTGCCGATGCTTAGACCCCGGCGGA
CTGTGCCCAAACCTTCGGTGCCGAGCACGGTGGTGGCGCCCATGTCCGCC
GCTACCTGCGTCTCTCCACCCGCCCAAAAAAACACTCACCCAGCTCGCTC
CACCTCCGGACCTTGCTCACCCCCCCGCTCCGCTGTTTTCCTGCCCACGC
ACCTCGTCTTGTCTGTCCCGGCGTCCCCAAAATCAACCAACTTCAACCGC
CGCGACCACACGCCACACCAACCCTGACGAACAACCCAATCGCCGCAACA
CTCCGAAATCGCAAACCCGACGGACGGGCAGTTCTCCGGACTGCGAGGCG
TCGTCGGCGACGGCAGCGGCGGCAACCGCGGCAAGCATGGCCTCCCCAAG
ACGGGGGCGCCGGGCAGCAAGATGAAGCGCCTCCACGGGCTGCTGGCGGC
CGCGGAGGAGAAAAAGCAGCGCCTGGCGGGGCTCCGCCAGACGGAGGAGG
GCAAGCTGAAGGCGAGGGAGGAGGGCTGGGCGGACGCCATCCGCGTGGCC
GCCGGGGCGGAGGTAAAGGACAACCCGGCCGCCCTGAAGAAGATGATCAA
GAGGAAGGAGAAGGACAAGGCCAAGAGCGCGGCCAAGTGGGACGACAGGT
TGTCGGGACAGAAGAAGGAGCAGTCCAAGAGGCAGGACAAGCGGGAGGAA
AACCTCAACAGGCGCAAGAGGGGCGGCGGGGGTGCGGCGGCGGCGGCGGG
GGAGACGGACAAGGCGGGGGCGGCGGCGGGGGCCGGCGGAGACGGAAAGG
TGGGCCGGGGCACGCTGATCGGGGTTTCCTGGGAGGTGGCTTTGTTCGGC
CGCTTGCCGGCGTTGTAGAGGCTGTTCTGTTCCACCCTTCCGCGCCCCGT
TTGGCTATTGCTGTCCTTTTTTCGTTGTTTTGCTCCAAATCGTTTGCGTT
GTTGCGGGCGCTTTGTGCTGCAGCATGCGGAACAGACGCACCTGACAGGC
TTGACTGAAAGCAGCACCTGACGAATGATATCCTACTGGACAATTCGAGG
CAGGGGTCGAGTCGAGGGATTTGTGCCCACCTGACTCTGGCGAGCTCATC
CCCACGCATCAAAAGCACGAGAGTACGGCTCGCTGTGTAGTCCAGCGTCC
CTGGCTTGCGTTCCCGTCACTCACGCACGACTGGTTTCTCGCTCTCTCTC
TCTCTCGCCGCGTCTATCGTTCCGACGCACGTTTTTTTTTTTTTAATGCT
TGACGACGCTCAGCGCCAACGACGAGCCGGATTCGAGGGCAAGAAGCAGG
ACTTCATCAACAAGGAGAGGCCCAACAAGGCCGGGGCACAAGATGGGGGA
GGCGGACGCGGCGGAGGCGGGAGGGGAGGAAGAGGGCGAGGTGGGGGCGG
GGGCAGGGATGGCGGGGGACGGGGGCGCGGCGGCGGAAGAGGCGGAGGGG
GCAGGGGGCGAGGGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1165:8715..13831+

>mRNA_H-canaliculatus_F_contig1165.1454.1 ID=mRNA_H-canaliculatus_F_contig1165.1454.1|Name=mRNA_H-canaliculatus_F_contig1165.1454.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3594bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1165:8715..13831+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACCAAGACCACTCGACGTGAGCGTCGTAAGAGAGCGATCGCTTCTGG
GGCCGCAGAGGCTCGAGGCGTGTCAAAAGTGAAGGCGAAGAAACACGTTG
CGCCAGGTTCAAACCACAGCTCGAAGAACCAAGCAGGTCCAGGTCTCCGC
GTTGGAAAGGATGGTAAGCAGCTCGCCAAGCGCCCCCTTGCACGAAAGCA
GCAGCGGGATGGCGGGAAAGCTGCGCAAAACAGAACTCCTGGCGGGGGTA
CAGGCGGGAGAAAAAAAAAGCGACCACGGAGCGAGATAGAAGAAGACGGT
GGAGAAGAGGAGGAGGAGGACTCTCAACCGCTGGTGGTTGACGAGCTTGT
GGCCACCATTCAGGAGCATGACCAGTTTTTCTCGAGGATGCTCGACATGA
TTCCGGAGCACCTGGTACTCCCGGCCAAGGAAGTGACAGAATCTTCGTAC
GCCAGCAAGTACATGAAGATGACCAAGACCACTCGACGTGAGCGTCGTAA
GAGAGCGATCGCTTCTGGGGCCGCAGAGGCTCGAGGCGTGTCAAAAGTGA
AGGCGAAGAAACACGTTGCGCCAGGTTCAAACCACAGCTCGAAGAACCAA
GCAGGTCCAGGTCTCCGCGTTGGAAAGGATGGTAAGCAGCTCGCCAAGCG
CCCCCTTGCACGAAAGCAGCAGCGGGATGGCGGGAAAGCTGCGCAAAACA
GAACTCCTGGCGGGGGTACAGGCGGGAGAAAAAAAAAGCGACCACGGAGC
GAGATAGAAGAAGACGGTGGAGAAGAGGAGGAGGAGGACTCTCAACCGCT
GGTGGTTGACGAGCTTGTGGCCACCATTCAGGAGCATGACCAGTTTTTCT
CGAGGATGCTCGACATGATTCCGGAGCACCTGGTACTCCCGGCCAAGGAA
GTGACAGAATCTTCGTACGCCAGCAAGTACATGAAGAACAAGAAGGGAGA
GGCGCCGCAGCAGTCAAAGAAGGAGGAGTCCAAGAAGAATAAGCGTGCGC
GCTATGCCGCCGATAATCAGAAGACGCTGCTCGAGAGGCAGCAGAACAAG
AAGGGAGAGGCGCCGCAGCAGTCAAAGAAGGAGGAGTCCAAGAAGAATAA
GCGTGCGCGCTATGCCGCCGATAATCAGAAGACGCTGCTCGAGAGGCAGC
AGGAACGCGCCAAGGTTGGGGAGGACGGGGCTCCTGCCGACGACACCGGC
GAGGGGGCTAGCGACGACGGCGGCGGCGACGAGGGGCTCGAGGCGGCGGC
GGAGCAGGACGGGCTCCAGGGCGAGGTGCTGAGGGGCAAGAACATGGACG
TTGCGTCCATGGATGCCCTCAAGCAGCGGATAGAGGAACGCGCCAAGGTT
GGGGAGGACGGGGCTCCTGCCGACGACACCGGCGAGGGGGCTAGCGACGA
CGGCGGCGGCGACGAGGGGCTCGAGGCGGCGGCGGAGCAGGACGGGCTCC
AGGGCGAGGTGCTGAGGGGCAAGAACATGGACGTTGCGTCCATGGATGCC
CTCAAGCAGCGGATAGAGGAGCGCATCAAGAAGTTCCAGGAGAAAAGAAC
GGCCGCTGAGGGGAGCCGTAGAGCAAAGACCGCCGCCAAGCGGAGCGCTC
AGAACGCCACCAAGAGGGAGAACAAGCGGAAGGGCGCCAAGGCGAAGAAG
AAGGGGAGGGAGGGCGCCATCGCCGCCGCCGCCGCCGCCGCGAAGGGCGG
GGTGGCAGAGGCCGCGGCGGCCGGAGAAGTCAATGGGATCACGGCAGGAG
CGCATCAAGAAGTTCCAGGAGAAAAGAACGGCCGCTGAGGGGAGCCGTAG
AGCAAAGACCGCCGCCAAGCGGAGCGCTCAGAACGCCACCAAGAGGGAGA
ACAAGCGGAAGGGCGCCAAGGCGAAGAAGAAGGGGAGGGAGGGCGCCATC
GCCGCCGCCGCCGCCGCCGCGAAGGGCGGGGTGGCAGAGGCCGCGGCGGC
CGGAGAAGTCAATGGGATCACGGCAGGCGCGAACGGCACCGGCAAAGCTG
CTTCCGCGAAGAAGGTCAAGGGGGCCAAGGTGGACGCCAACGGGTCGCAC
GCTGAAGCGCCGACGCCGCAGCTGCCTCCGCTGCCTACCGTGGAGGATGT
CGGAGATATCGAGGCGCGAACGGCACCGGCAAAGCTGCTTCCGCGAAGAA
GGTCAAGGGGGCCAAGGTGGACGCCAACGGGTCGCACGCTGAAGCGCCGA
CGCCGCAGCTGCCTCCGCTGCCTACCGTGGAGGATGTCGGAGATATCGAG
TTCTCCGGACTGCGAGGCGTCGTCGGCGACGGCAGCGGCGGCAACCGCGG
CAAGCATGGCCTCCCCAAGACGGGGGCGCCGGGCAGCAAGATGAAGCGCC
TCCACGGGCTGCTGGCGGCCGCGGAGGAGAAAAAGCAGCGCCTGGCGGGG
CTCCGCCAGACGGAGGAGGGCAAGCTGAAGGCGAGGGAGGAGGGCTGGGC
GGACGCCATCCGCGTGGCCGCCGGGGCGGAGGTAAAGGACAACCCGGCCG
CCCTGAAGAAGATGATCAAGAGGAAGGAGAAGGACAAGGCCAAGAGCGCG
GCCAAGTGGGACGACAGGTTGTCGGGACAGAAGAAGGAGCAGTCCAAGAG
GCAGGACAAGCGGGAGGAAAACCTCAACAGGCGCAAGAGGGGCGGCGGGG
GTGCGGCGGCGGCGGCGGGGGAGACGGACAAGGCGGGGGCGGCGGCGGGG
GCCGGCGGAGACGGAAAGTTCTCCGGACTGCGAGGCGTCGTCGGCGACGG
CAGCGGCGGCAACCGCGGCAAGCATGGCCTCCCCAAGACGGGGGCGCCGG
GCAGCAAGATGAAGCGCCTCCACGGGCTGCTGGCGGCCGCGGAGGAGAAA
AAGCAGCGCCTGGCGGGGCTCCGCCAGACGGAGGAGGGCAAGCTGAAGGC
GAGGGAGGAGGGCTGGGCGGACGCCATCCGCGTGGCCGCCGGGGCGGAGG
TAAAGGACAACCCGGCCGCCCTGAAGAAGATGATCAAGAGGAAGGAGAAG
GACAAGGCCAAGAGCGCGGCCAAGTGGGACGACAGGTTGTCGGGACAGAA
GAAGGAGCAGTCCAAGAGGCAGGACAAGCGGGAGGAAAACCTCAACAGGC
GCAAGAGGGGCGGCGGGGGTGCGGCGGCGGCGGCGGGGGAGACGGACAAG
GCGGGGGCGGCGGCGGGGGCCGGCGGAGACGGAAAGCGCCAACGACGAGC
CGGATTCGAGGGCAAGAAGCAGGACTTCATCAACAAGGAGAGGCCCAACA
AGGCCGGGGCACAAGATGGGGGAGGCGGACGCGGCGGAGGCGGGAGGGGA
GGAAGAGGGCGAGGTGGGGGCGGGGGCAGGGATGGCGGGGGACGGGGGCG
CGGCGGCGGAAGAGGCGGAGGGGGCAGGGGGCGAGGGTAGCGCCAACGAC
GAGCCGGATTCGAGGGCAAGAAGCAGGACTTCATCAACAAGGAGAGGCCC
AACAAGGCCGGGGCACAAGATGGGGGAGGCGGACGCGGCGGAGGCGGGAG
GGGAGGAAGAGGGCGAGGTGGGGGCGGGGGCAGGGATGGCGGGGGACGGG
GGCGCGGCGGCGGAAGAGGCGGAGGGGGCAGGGGGCGAGGGTAG
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