mRNA_H-canaliculatus_F_contig1165.1453.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1165.1453.1
Unique NamemRNA_H-canaliculatus_F_contig1165.1453.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1165.1453.1 vs. uniprot
Match: A0A6H5KNI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI2_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 9.100e-32
Identity = 60/96 (62.50%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:    4 RPMDPRQWFMAKTKVMAMIALDKHKVYTSSPEQSIGKGIEYKSYLAMVQTPIWLQKIQHLVGDIKVDCRYRTADDFLKDVRRLCANSFLYSRSTSN 291
            RP+DPR+W+ A+T+V  MI LD  KVYT+SP+ SIG G  Y SYLAMV+TPIWL++IQ  V  +K  C+YRT D+FL DVRRLCANSF+++R TSN
Sbjct:  740 RPIDPREWYCARTQVEKMIRLDYQKVYTNSPKLSIG-GASYTSYLAMVETPIWLREIQTRVAPVKPKCKYRTIDEFLHDVRRLCANSFMWTRETSN 834
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BLAST of mRNA_H-canaliculatus_F_contig1165.1453.1 vs. uniprot
Match: D7FWI3_ECTSI (Global transcription factor group n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWI3_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 2.300e-31
Identity = 59/96 (61.46%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:    4 RPMDPRQWFMAKTKVMAMIALDKHKVYTSSPEQSIGKGIEYKSYLAMVQTPIWLQKIQHLVGDIKVDCRYRTADDFLKDVRRLCANSFLYSRSTSN 291
            RP+DPR+W+ A+T+V  MI LD  KVYT+SP+ SIG G  Y SYLAMV+TPIWL++IQ  V  +K  C+YRT D+F+ DVRRLCANSF+++R TSN
Sbjct:  335 RPIDPREWYCARTQVEKMIRLDYQKVYTNSPKLSIG-GASYTSYLAMVETPIWLREIQTRVAPVKPKCKYRTIDEFVHDVRRLCANSFMWTRETSN 429
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1165.1453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNI2_9PHAE9.100e-3262.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWI3_ECTSI2.300e-3161.46Global transcription factor group n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1165contigH-canaliculatus_F_contig1165:3301..4061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size295
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1165.1453.1prot_H-canaliculatus_F_contig1165.1453.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1165 3301..4052 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928856.729617-CDS-H-canaliculatus_F_contig1165:3300..33851622928856.729617-CDS-H-canaliculatus_F_contig1165:3300..3385Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1165 3301..3385 -
1696845590.8357291-CDS-H-canaliculatus_F_contig1165:3300..33851696845590.8357291-CDS-H-canaliculatus_F_contig1165:3300..3385Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1165 3301..3385 -
1622928856.74449-CDS-H-canaliculatus_F_contig1165:3852..40521622928856.74449-CDS-H-canaliculatus_F_contig1165:3852..4052Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1165 3853..4052 -
1696845590.848091-CDS-H-canaliculatus_F_contig1165:3852..40521696845590.848091-CDS-H-canaliculatus_F_contig1165:3852..4052Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1165 3853..4052 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928856.7631466-UTR-H-canaliculatus_F_contig1165:4052..40611622928856.7631466-UTR-H-canaliculatus_F_contig1165:4052..4061Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1165 4053..4061 -
1696845590.8562348-UTR-H-canaliculatus_F_contig1165:4052..40611696845590.8562348-UTR-H-canaliculatus_F_contig1165:4052..4061Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1165 4053..4061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1165.1453.1

>prot_H-canaliculatus_F_contig1165.1453.1 ID=prot_H-canaliculatus_F_contig1165.1453.1|Name=mRNA_H-canaliculatus_F_contig1165.1453.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=95bp
MDPRQWFMAKTKVMAMIALDKHKVYTSSPEQSIGKGIEYKSYLAMVQTPI
WLQKIQHLVGDIKVDCRYRTADDFLKDVRRLCANSFLYSRSTSNE
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mRNA from alignment at H-canaliculatus_F_contig1165:3301..4061-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1165.1453.1 ID=mRNA_H-canaliculatus_F_contig1165.1453.1|Name=mRNA_H-canaliculatus_F_contig1165.1453.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=761bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1165:3301..4061- (Hapterophycus canaliculatus Oshoro5f female)
AGCAGGCCGATGGACCCGCGGCAGTGGTTCATGGCCAAGACGAAGGTGAT
GGCGATGATCGCCCTGGACAAGCACAAGGTGTACACGAGCTCTCCGGAGC
AGTCGATCGGGAAGGGCATCGAGTACAAGTCGTACCTGGCGATGGTCCAG
ACTCCGATCTGGCTGCAGAAGATCCAGCACCTCGTCGGAGACATCAAAGT
GGACTGCAGGTGTGCGTTTGTTTGGATGTGTTGGTCGTCTTGTTGCTGCT
GTCGTCGTTGCTGGTTTTGCTGGTGCGGCTGTTGTGGCTGTTGTTGTCGC
TGGCTGTGGTGTTGTTTTGCCGACCACCCTCTTCTAGACCTTGGTCACAA
GTCTGGCGCAGCACCGTGGCAGAAACGTCAACAGGCAAGCCTAGCAGGCA
CCACACATCGCACGTCGAGGTATCGTACTGCGGAGTTTGCCGTCTGGAGT
GCTCTGCTCAAAACCCGTCCTCGGTTGTTCGAAGGGGAAATTCCCGGGGA
GAGAAAAGCCTCATCGAAAGAAGAGACCGGTCGCGTGTGTGACCTTTCCT
CCTCTGCATCCCACAGACCCACCCCCTTCCACCGATGGAATCCATCCTCG
CCCTTCCCTGGCCTTTCTATCCCTCCGTCCTTCCCAATCTTACCCCGCTC
CCACCCACGGTTTCCCTCTCATCCAGGTACCGCACGGCCGACGACTTCCT
GAAAGACGTTCGAAGGCTGTGCGCGAACTCGTTTCTGTACTCGCGGAGCA
CATCCAACGAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1165:3301..4061-

>mRNA_H-canaliculatus_F_contig1165.1453.1 ID=mRNA_H-canaliculatus_F_contig1165.1453.1|Name=mRNA_H-canaliculatus_F_contig1165.1453.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=570bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1165:3301..4061- (Hapterophycus canaliculatus Oshoro5f female)
ATGGACCCGCGGCAGTGGTTCATGGCCAAGACGAAGGTGATGGCGATGAT
CGCCCTGGACAAGCACAAGGTGTACACGAGCTCTCCGGAGCAGTCGATCG
GGAAGGGCATCGAGTACAAGTCGTACCTGGCGATGGTCCAGACTCCGATC
TGGCTGCAGAAGATCCAGCACCTCGTCGGAGACATCAAAGTGGACTGCAG
ATGGACCCGCGGCAGTGGTTCATGGCCAAGACGAAGGTGATGGCGATGAT
CGCCCTGGACAAGCACAAGGTGTACACGAGCTCTCCGGAGCAGTCGATCG
GGAAGGGCATCGAGTACAAGTCGTACCTGGCGATGGTCCAGACTCCGATC
TGGCTGCAGAAGATCCAGCACCTCGTCGGAGACATCAAAGTGGACTGCAG
GTACCGCACGGCCGACGACTTCCTGAAAGACGTTCGAAGGCTGTGCGCGA
ACTCGTTTCTGTACTCGCGGAGCACATCCAACGAAGTACCGCACGGCCGA
CGACTTCCTGAAAGACGTTCGAAGGCTGTGCGCGAACTCGTTTCTGTACT
CGCGGAGCACATCCAACGAA
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