mRNA_H-canaliculatus_F_contig1012.145.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1012.145.1
Unique NamemRNA_H-canaliculatus_F_contig1012.145.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1012.145.1 vs. uniprot
Match: D7FM74_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM74_ECTSI)

HSP 1 Score: 388 bits (996), Expect = 2.060e-131
Identity = 180/220 (81.82%), Postives = 195/220 (88.64%), Query Frame = 3 
Query:   66 VRVCVHTSAMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSKFNEHGHPDGEEILVLEGSWQDENGEHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSRRHVRLDTKSLHWQDTDTPGVKVKALYSHPAHPESMRIEKWEAGAKVERECPRITELLVLEGQAR--DASETFEPRSWLRLPAGAALSMSSTSGCDIFIKEGEWLPPIAEET 719
            VRV VHTS MEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANS+FNEHGHPDGEEILVLEGSWQD NG+HPAGTYMLNPEGFRHAP S+DGCVLWVKLRQHGGPSR+H RLDT S+ W+DTD PGVK K LYSHP H ESMRIEKW+AGAKVEREC ++TE LVLEG+A   DASETF  RSWLRLPAGA LSM+S +GC +F+KEGEWLPP +  T
Sbjct:   11 VRVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPCSRDGCVLWVKLRQHGGPSRKHTRLDTNSMQWEDTDIPGVKAKELYSHPDHVESMRIEKWDAGAKVERECQKMTEFLVLEGEAEAHDASETFTKRSWLRLPAGATLSMTSAAGCQVFVKEGEWLPPSSSNT 230
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1012.145.1 vs. uniprot
Match: A0A1Y5TZ85_9PROT (ChrR Cupin-like domain protein n=1 Tax=Oceanibacterium hippocampi TaxID=745714 RepID=A0A1Y5TZ85_9PROT)

HSP 1 Score: 235 bits (599), Expect = 1.220e-71
Identity = 118/215 (54.88%), Postives = 151/215 (70.23%), Query Frame = 3 
Query:   63 YVRVCVHTSAMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSKFNEHGHPDGEEILVLEGSWQDENGEHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSRRHVRLDTKSLHWQDTDTPGVKVKALYSHPAHPESMRIEKWEAGAKVEREC-PRITELLVLEGQARDASETFEPRSWLRLPAGAALSMSSTSGCDIFIKEGEWLPP 704
            + RV + T+AM W  SPSPSVWRKR+ L GP E+GRVT++VRY+  S+F  H HPDGEEILVLEG++ DE+G++PAG+Y+LNPEGFRHAP S DGC+L+VKLRQ GGP R H  +DT +L WQ  + PG  VK LY+ P   E MR+ + + GA+V R    R  E+LVLEG   D   T+   SWLR P G+A S+ S  G  I++K+G  LPP
Sbjct:   10 HARVAMDTAAMAWQASPSPSVWRKRLDLSGPAEAGRVTALVRYEPGSRFPAHEHPDGEEILVLEGTFSDEHGDYPAGSYLLNPEGFRHAPFSVDGCLLFVKLRQFGGPGRAHHAIDTAALDWQPGNMPGRSVKPLYAAPDGIEQMRLVRLDPGAQVPRHVHDRGEEVLVLEGAIADEDGTYGKGSWLRFPDGSAHSVRSEHGAVIYVKQGH-LPP 223
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1012.145.1 vs. uniprot
Match: A0A7C2JUM9_9GAMM (Anti-sigma factor n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C2JUM9_9GAMM)

HSP 1 Score: 229 bits (584), Expect = 2.670e-69
Identity = 116/208 (55.77%), Postives = 144/208 (69.23%), Query Frame = 3 
Query:   69 RVCVHTSAMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSKFNEHGHPDGEEILVLEGSWQDENGEHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSRRHVRLDTKSLHWQDTDTPGVKVKALYSHPAHPESMRIEKWEAGAKVER-ECPRITELLVLEGQARDASETFEPRSWLRLPAGAALSMSSTSGCDIFIKEG 689
            RV V T+AM W PSPS +V+RKRV L GP ESG+VTSVVRY   + F+ H HPDGEEILVLEG + DE+G+ PAGTY+LNPEGFRH+P S+DGCVL+VKLRQ  G +R HV L T +L W+     GV V+ LY+     ++MR+E+W   A++   E P   EL VLEG  RD    F   +WLRLP GAA S S+  GC ++IKEG
Sbjct:   17 RVAVDTAAMAWTPSPSRTVFRKRVHLVGPPESGQVTSVVRYGPGATFHTHAHPDGEEILVLEGVFSDEHGDWPAGTYLLNPEGFRHSPFSRDGCVLFVKLRQFPGRTREHVALRTDTLEWRPAARAGVAVRPLYAQAGFADTMRLERWPPEARLRPIEYPSGAELFVLEGSFRDEDGEFARGAWLRLPPGAAHSPSTAEGCVLYIKEG 224
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1012.145.1 vs. uniprot
Match: A0A523JHQ7_9DELT (Anti-sigma factor n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A523JHQ7_9DELT)

HSP 1 Score: 221 bits (563), Expect = 3.320e-66
Identity = 112/209 (53.59%), Postives = 145/209 (69.38%), Query Frame = 3 
Query:   72 VCVHTSAMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSKFNEHGHPDGEEILVLEGSWQDENGEHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSRRHVRLDTKSLHWQDTDTPGVKVKALYSHPAHPESMRIEKWEAGAK---VERECPRITELLVLEGQARDASETFEPRSWLRLPAGAALSMSSTSGCDIFIKEG 689
            V +HTS+MEW PSPS SV RKRV L G  E+G+VTSVVRY  NS F  H HP+GEEILVL+G + DE+G+ PAG+Y+LNPEGFRHAP SK GC+++VKLRQ+GG  RRHV L T  L W+     G+++K LYS    P+ MR+E+W  GA    V  E     E+LVL G+  D   +++  SWLRLPAGA  +  S +GC++++K G
Sbjct:   15 VVMHTSSMEWLPSPSGSVLRKRVHLVGGAEAGQVTSVVRYLENSSFAAHDHPEGEEILVLDGVFSDEHGDWPAGSYLLNPEGFRHAPFSKPGCLIFVKLRQYGGRGRRHVALCTHELPWKSGPHAGIELKLLYSEAGFPDEMRLERWAPGATPGTVSYEGG--AEILVLRGRLEDEQGSYDKLSWLRLPAGATHTPVSPNGCELYLKTG 221
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1012.145.1 vs. uniprot
Match: A0A523JY10_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523JY10_9GAMM)

HSP 1 Score: 217 bits (553), Expect = 8.480e-65
Identity = 107/207 (51.69%), Postives = 134/207 (64.73%), Query Frame = 3 
Query:   72 VCVHTSAMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSKFNEHGHPDGEEILVLEGSWQDENGEHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSRRHVRLDTKSLHWQDTDTPGVKVKALYSHPAHPESMRIEKWEAGAKV-ERECPRITELLVLEGQARDASETFEPRSWLRLPAGAALSMSSTSGCDIFIKEG 689
            V V T+AMEW  SP   VWRKR+ L G  ESGRVTS+VRYDA S+F  H HP+GEEILVLEG   DE+G +PAGTY+LNPEGFRHAP S  GCVL+VKLRQ+ G  R H  +D+ S  WQ ++ PG +V  LY    H ESMR+ +   G +V E + P   E+ V+ G   D   T+E  +WLR P G+     S  GC +++K G
Sbjct:   12 VVVRTAAMEWRSSPGAGVWRKRLELRGAAESGRVTSIVRYDAGSRFPPHEHPEGEEILVLEGILADEHGSYPAGTYLLNPEGFRHAPRSDQGCVLFVKLRQYPGSDRSHCEVDSNSATWQQSEPPGREVLPLYDEHGHRESMRLVRLAPGTRVPEHDHPGGEEIYVMAGSLADGQGTYEQGTWLRFPDGSRHQPFSDEGCTLYVKTG 218
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1012.145.1 vs. uniprot
Match: A4AC30_9GAMM (Anti-ECFsigma factor, ChrR n=1 Tax=Congregibacter litoralis KT71 TaxID=314285 RepID=A4AC30_9GAMM)

HSP 1 Score: 216 bits (549), Expect = 3.930e-64
Identity = 105/208 (50.48%), Postives = 138/208 (66.35%), Query Frame = 3 
Query:   69 RVCVHTSAMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSKFNEHGHPDGEEILVLEGSWQDENGEHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSRRHVRLDTKSLHWQDTDTPGVKVKALYSHPAHPESMRIEKWEAGAKVER-ECPRITELLVLEGQARDASETFEPRSWLRLPAGAALSMSSTSGCDIFIKEG 689
            R  V +S ++W  SP   V RKR+   GP ESG+VTS+VRY   S+F  H HPDGEEILVL+G + DE+G+ PAGTY+LNPEGFRHAP SKDGC+L+VKLRQ  G SR+HV LDT +  W+ +  PGV  K LY+  +  + MR+E+W A   +     P+  EL VL G   DA   +   SWLRLP G++L+    + C+++IKEG
Sbjct:   13 RTAVDSSTLDWQESPGGEVLRKRLHRVGPAESGQVTSLVRYQPGSRFPAHAHPDGEEILVLDGVFSDEHGDWPAGTYLLNPEGFRHAPFSKDGCLLFVKLRQFPGESRKHVALDTNTAEWRSSVRPGVAWKKLYAQDSFSDHMRLERWAAPGNIGTLNFPQGAELFVLRGSFADAQGDYPTHSWLRLPPGSSLTPEGNTPCELYIKEG 220
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1012.145.1 vs. uniprot
Match: UPI000688EB27 (cupin domain-containing protein n=1 Tax=Marinobacterium jannaschii TaxID=64970 RepID=UPI000688EB27)

HSP 1 Score: 216 bits (549), Expect = 4.610e-64
Identity = 107/211 (50.71%), Postives = 137/211 (64.93%), Query Frame = 3 
Query:   69 RVCVHTSAMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSKFNEHGHPDGEEILVLEGSWQDENGEHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSRRHVRLDTKSLHWQDTDTPGVKVKALYSHPAHPESMRIEKWEAGAKV-ERECPRITELLVLEGQARDASETFEPRSWLRLPAGAALSMSSTSGCDIFIKEGEWL 698
            RV +  S+M+W PSPS +VWRKR  L G  ESG+VTS+VRYD  ++F  H HP GEEILVLEG + D+ G+ PAG+Y+LNPEGF HAP S +GC+L VKLRQ  G  RRH+ LDT  L WQ ++  GV VK LY+   +PE MR+E W   +   E E P   E  V+ G+  D    +   SWLRLPAG+  +  S  GC+++IK G  L
Sbjct:   11 RVQLDASSMDWQPSPSGTVWRKRFHLVGEGESGQVTSLVRYDPGARFPSHPHPGGEEILVLEGIFSDQQGDWPAGSYLLNPEGFEHAPGSAEGCLLLVKLRQFAGQERRHLALDTAELAWQPSEIKGVLVKQLYADNDYPEQMRLEHWAPDSHCGELEYPEGAEFFVISGEFEDEQGRYPAGSWLRLPAGSRHNPRSALGCELYIKTGHLL 221
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1012.145.1 vs. uniprot
Match: A0A534ASB5_9GAMM (Anti-sigma factor n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534ASB5_9GAMM)

HSP 1 Score: 214 bits (545), Expect = 1.360e-63
Identity = 106/209 (50.72%), Postives = 144/209 (68.90%), Query Frame = 3 
Query:   66 VRVCVHTSAMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSKFNEHGHPDGEEILVLEGSWQDENGEHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSRRHVRLDTKSLHWQDTDTPGVKVKALYSHPAHPESMRIEKWEAGAKV-ERECPRITELLVLEGQARDASETFEPRSWLRLPAGAALSMSSTSGCDIFIKEG 689
             RV V T  + W PSPS +VWRKR+ L GP E+G+VTS+VRY  +S+F  H HPDGEEILVLEG + DE+G+ PAGTY+LNPEGFRHAP S+ GC L+VKLRQ  G  RRHV +DT++L WQ  +  G  +K LY+   + +SMR+E+W +G++  E +  +  EL VL G   D   +++  +WLRLP  A     ++ GC+++IKEG
Sbjct:   11 ARVVVDTKTLPWTPSPSGTVWRKRLHLVGPPEAGQVTSLVRYQPHSEFPLHDHPDGEEILVLEGVFSDEHGDWPAGTYLLNPEGFRHAPYSRGGCHLFVKLRQFPGKDRRHVVIDTQNLSWQTRE--GRAIKLLYAQVGYADSMRLERWPSGSRPGELKYSQGAELWVLGGAFEDERGSYDAHTWLRLPPQARHCPRTSGGCELYIKEG 217
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1012.145.1 vs. uniprot
Match: A0A536YCZ3_9PROT (Anti-sigma factor n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536YCZ3_9PROT)

HSP 1 Score: 214 bits (545), Expect = 2.200e-63
Identity = 109/207 (52.66%), Postives = 134/207 (64.73%), Query Frame = 3 
Query:   66 VRVCVHTSAMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSKFNEHGHPDGEEILVLEGSWQDENGEHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSRRHVRLDTKSLHWQDTDTPGVKVKALYSHPAHPESMRIEKWEAGAKVER-ECPRITELLVLEGQARDASETFEPRSWLRLPAGAALSMSSTSGCDIFIK 683
            VR    T+ MEWAPSPS SVWRKRV L GP ESG+VTSVVRY   S+F  H HP GEEILVLEG + DE+G+ PAGT++LNPEGFRHAP S+ GCVL+VKLRQ  G  R H+ +DT  L W+ +  P V  KALY      + MR+E+WE  A +      +  EL VL G+  D +  +    WLRLPAG+     S  GC ++IK
Sbjct:   11 VRAVADTTRMEWAPSPSRSVWRKRVHLVGPPESGQVTSVVRYGPRSRFPAHDHPQGEEILVLEGVFSDEHGDWPAGTFLLNPEGFRHAPFSEPGCVLFVKLRQFPGRERSHIVIDTHKLAWEPSSLPAVAYKALYQQTGFSDVMRLERWEPQADLGVVSYEQGAELFVLGGEFVDEAGAYSAGCWLRLPAGSEHHPRSAGGCTVYIK 217
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1012.145.1 vs. uniprot
Match: A0A7Y2ICR3_9GAMM (Anti-sigma factor n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A7Y2ICR3_9GAMM)

HSP 1 Score: 213 bits (542), Expect = 4.920e-63
Identity = 105/211 (49.76%), Postives = 137/211 (64.93%), Query Frame = 3 
Query:   66 VRVCVHTSAMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSKFNEHGHPDGEEILVLEGSWQDENGEHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSRRHVRLDTKSLHWQDTDTPGVKVKALYSHPAHPESMRIEKWEA---GAKVERECPRITELLVLEGQARDASETFEPRSWLRLPAGAALSMSSTSGCDIFIKEG 689
            VR  + T AMEW  SPS +VWRKRV L G  ESG+VTS+VRY   S F  H HP+GEEILVLEG + DE+G+ PAGTY+LNPEGFRHAP S+ GC+L+VKLRQ  GP R H  +DT+   WQ T   GV  K+LY    + ++ R+E+WEA      +  E  +  E  VL+G+  D    +   +WLR+PAG   S  ++ GC ++IK+G
Sbjct:   14 VRAFMDTQAMEWTASPSGTVWRKRVHLVGAPESGQVTSIVRYQPESSFPAHDHPEGEEILVLEGVFSDEHGDWPAGTYLLNPEGFRHAPFSQQGCLLFVKLRQFPGPDREHHVIDTRDREWQPTQRKGVWQKSLYRQAGYSDTTRLERWEAESTAGTISHE--QGAEFFVLDGEFEDDEGVYPAGTWLRIPAGGMHSPGTSRGCQLYIKQG 222
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1012.145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM74_ECTSI2.060e-13181.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1Y5TZ85_9PROT1.220e-7154.88ChrR Cupin-like domain protein n=1 Tax=Oceanibacte... [more]
A0A7C2JUM9_9GAMM2.670e-6955.77Anti-sigma factor n=1 Tax=Gammaproteobacteria bact... [more]
A0A523JHQ7_9DELT3.320e-6653.59Anti-sigma factor n=1 Tax=Deltaproteobacteria bact... [more]
A0A523JY10_9GAMM8.480e-6551.69Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A4AC30_9GAMM3.930e-6450.48Anti-ECFsigma factor, ChrR n=1 Tax=Congregibacter ... [more]
UPI000688EB274.610e-6450.71cupin domain-containing protein n=1 Tax=Marinobact... [more]
A0A534ASB5_9GAMM1.360e-6350.72Anti-sigma factor n=2 Tax=Gammaproteobacteria bact... [more]
A0A536YCZ3_9PROT2.200e-6352.66Anti-sigma factor n=3 Tax=Betaproteobacteria bacte... [more]
A0A7Y2ICR3_9GAMM4.920e-6349.76Anti-sigma factor n=1 Tax=Woeseiaceae bacterium Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1012contigH-canaliculatus_F_contig1012:160..5440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score387.5
Seed ortholog evalue4.3e-105
Seed eggNOG ortholog2880.D7FM74
EggNOG free text desc.ChrR Cupin-like domain
EggNOG OGs2SA9Z@2759,COG3806@1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRmlC-like jelly roll fold
Ec32 orthologEc-16_004810.1
Exons7
Model size1391
Cds size681
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928640.9419596-UTR-H-canaliculatus_F_contig1012:159..8281622928640.9419596-UTR-H-canaliculatus_F_contig1012:159..828Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1012 160..828 -
1696845508.766298-UTR-H-canaliculatus_F_contig1012:159..8281696845508.766298-UTR-H-canaliculatus_F_contig1012:159..828Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1012 160..828 -
1622928641.0339565-UTR-H-canaliculatus_F_contig1012:5399..54401622928641.0339565-UTR-H-canaliculatus_F_contig1012:5399..5440Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1012 5400..5440 -
1696845508.8553286-UTR-H-canaliculatus_F_contig1012:5399..54401696845508.8553286-UTR-H-canaliculatus_F_contig1012:5399..5440Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1012 5400..5440 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928640.9544482-CDS-H-canaliculatus_F_contig1012:828..9621622928640.9544482-CDS-H-canaliculatus_F_contig1012:828..962Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 829..962 -
1696845508.781032-CDS-H-canaliculatus_F_contig1012:828..9621696845508.781032-CDS-H-canaliculatus_F_contig1012:828..962Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 829..962 -
1622928640.9682384-CDS-H-canaliculatus_F_contig1012:1508..16241622928640.9682384-CDS-H-canaliculatus_F_contig1012:1508..1624Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 1509..1624 -
1696845508.792464-CDS-H-canaliculatus_F_contig1012:1508..16241696845508.792464-CDS-H-canaliculatus_F_contig1012:1508..1624Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 1509..1624 -
1622928640.9788256-CDS-H-canaliculatus_F_contig1012:2385..25431622928640.9788256-CDS-H-canaliculatus_F_contig1012:2385..2543Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 2386..2543 -
1696845508.8015547-CDS-H-canaliculatus_F_contig1012:2385..25431696845508.8015547-CDS-H-canaliculatus_F_contig1012:2385..2543Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 2386..2543 -
1622928640.9907446-CDS-H-canaliculatus_F_contig1012:3349..33961622928640.9907446-CDS-H-canaliculatus_F_contig1012:3349..3396Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 3350..3396 -
1696845508.8096855-CDS-H-canaliculatus_F_contig1012:3349..33961696845508.8096855-CDS-H-canaliculatus_F_contig1012:3349..3396Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 3350..3396 -
1622928641.0029962-CDS-H-canaliculatus_F_contig1012:4075..41601622928641.0029962-CDS-H-canaliculatus_F_contig1012:4075..4160Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 4076..4160 -
1696845508.8204405-CDS-H-canaliculatus_F_contig1012:4075..41601696845508.8204405-CDS-H-canaliculatus_F_contig1012:4075..4160Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 4076..4160 -
1622928641.0126898-CDS-H-canaliculatus_F_contig1012:4574..46921622928641.0126898-CDS-H-canaliculatus_F_contig1012:4574..4692Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 4575..4692 -
1696845508.8329942-CDS-H-canaliculatus_F_contig1012:4574..46921696845508.8329942-CDS-H-canaliculatus_F_contig1012:4574..4692Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 4575..4692 -
1622928641.024283-CDS-H-canaliculatus_F_contig1012:5376..53991622928641.024283-CDS-H-canaliculatus_F_contig1012:5376..5399Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 5377..5399 -
1696845508.8461754-CDS-H-canaliculatus_F_contig1012:5376..53991696845508.8461754-CDS-H-canaliculatus_F_contig1012:5376..5399Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1012 5377..5399 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1012.145.1prot_H-canaliculatus_F_contig1012.145.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1012 829..5399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1012.145.1

>prot_H-canaliculatus_F_contig1012.145.1 ID=prot_H-canaliculatus_F_contig1012.145.1|Name=mRNA_H-canaliculatus_F_contig1012.145.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=227bp
MPYRTRSYVRVCVHTSAMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRY
DANSKFNEHGHPDGEEILVLEGSWQDENGEHPAGTYMLNPEGFRHAPSSK
DGCVLWVKLRQHGGPSRRHVRLDTKSLHWQDTDTPGVKVKALYSHPAHPE
SMRIEKWEAGAKVERECPRITELLVLEGQARDASETFEPRSWLRLPAGAA
LSMSSTSGCDIFIKEGEWLPPIAEET*
back to top

mRNA from alignment at H-canaliculatus_F_contig1012:160..5440-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1012.145.1 ID=mRNA_H-canaliculatus_F_contig1012.145.1|Name=mRNA_H-canaliculatus_F_contig1012.145.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5281bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1012:160..5440- (Hapterophycus canaliculatus Oshoro5f female)
AAACATGAAACTACCCATGGGCGAGAAGGAACGGGGGTGGTATGCCATAC
AGAACAAGATCCTAGTGCAATGGTTGCTCAATCTTCCTGCGTGTCGCCCG
CTCAGGGTCGTTGAAGATGAGCCACAAAAAAACTGAAAAAACGCTGTGCT
GAACATCCGACTTATAAACATAGAGTGCTGCTGCTGCTGCCGCCGCCGAA
CGATTGCTTGTTCGTCTGCCCTTCAATGCTGTCCCGGAAGAGTTGAGTGA
CATGAGGGTGACACATGTACGAGATCATGCCGGTTTGCCGATATATGTGA
GATCCTACCTCTCGACATGTTGTGCGGTAGAAGCGATGCATCGGTGGCAA
AAGTGCAACCGATGCTACTCAAAAGGTTCATTTCCACACTACTCTGAAGT
TCATACCTGTAGCCTTGTGTGTGCCAAGTCCTCCTGAGATGGCTGCCGCC
GACGTTTTGTCGCTGGAGGGCGCTCGCAGCAAGATACCGATCCCTCTGGC
GCACATGTATCGCAAACCTACAGTATATAATACTCAGTATCAATGACTTC
AGGTTCCCACATTTCTGCACATCTTAGGGAAGGGTTACAGATTCTGTACC
TGGTAGTGCACAAAACACATCTTATTGCCGCATCACGCGAGGCCCTGCCG
CATCTAAGATCTGTTGTTGCCGACCTGTGAAATACCTGAGTTTTCATCGT
TAGTTTCTCCTGGGTTGCAATACTGTATGTTATGAAACCTCGCAGGAGCG
TGCGCGTGTGCGTCCACACGAGCGCAATGGAGTGGGCCCCTTCTCCGTCT
CCCTCTGTGTGGAGAAAACGAGTAGCTCTCGAAGGCCCTCAAGAATCGGG
GAGGGTCACGTCTGTGGTAAGACCATCGTTCGTACTAATGCTGCGTCAAA
CCGGCAGTATTTAGAAACGACGAGATACACACCAAGTTCATGTTGAACTG
GTTCAGCCGCGACATGAACGCCACGGGTACGTGAGTTGAATTTTGAGGTT
TAGCAGCACTGGACGACGTTATCCAAACAGTGTTTCAGGGTCTCTAGGCT
CATCGAAGTTGCTGGCGACTACACGCAGGTGGTGATGGGCAATATTCGAA
CCTGCTCCATGGACACAGAAAGTGAATCGTCTCGTCTTGCCTATTTCTCA
GTTGCTTTGGGCTGTCATCGGTCCGTGTCTCCCCTTCTACGCTCTATTGT
CTTGACTTCGTCTTGAATGCGTCTTGACGCCATATGGGCTGCATCCCCGC
TCGACCTTGACTTGTTTTGACGACTATCAGGTACGGTACGATGCCAACAG
TAAATTCAACGAGCACGGACACCCCGACGGCGAAGAAATCCTGGTTCTCG
AGGGATCGTGGCAAGGTACCACGCATCAAACGTGGTGTAACCTGTTGCTC
GCGTTGAGGATTGGACGGGTTCGTCCTATCTGCACTCGAAATAGCGCGAG
CTAGCGCGCTTGCTCACCACCTGACAGCGGCAAGCGACATTCCTGATGGT
TGTTGTCCCCCGGATGCGACCGCCCAGTGGCAAAGCTTGGAGACAATCAC
CAAGCGGTGGCACAAACAAGCAACTTGGAGCGATCAGCGAACCAAGGCTC
TAGCCTTGATCGCGAAGTGCCATGCACGTATTGACCATATGTGTTGTTGT
AGAGCTACATGAAAGACACGAAGAGAGCAGCGACAATGACAAGTTTGGCG
GTAGGCTGCACTCGTCCACGGTTTCTTGGGTCTCAAGCGGACCCTGACTT
CGCAAAGTCCCGGGTTCACAAACAAACCCCGTCCGCGCGACAGCTTCTTG
CTTCAAGGCTCTCTCTTTCTGGAGATGGCACATGGGTACCCAATCATGGA
TTCCGGCTGATTCCACCTCTTGTGACCCACGAAGGTATGGCTTTCCTCTC
GCACGCCCCCTGATCTTCCATCCCTCTGCATGGTGCTCCCCTCCTCTCGC
TCCTCTTCTGTCCCCGATTGCTCGTCGTTCTTGGTCTGGTCCGCTGGTGT
CTATATTCCGAACACGCTCGGGCATTTATCTGTCATTGTCGAAGACGAAA
ACGGGGAACATCCCGCAGGCACATACATGCTCAATCCAGAGGTACGTGTG
CGCACTATGGCAGGTGGAACACAACATAATGCTGTATTCATTGCCTTGGT
GGATTCGATGAGGATGGGATGCCAGACATTTCGTACGTAAGAGGTGACGT
CACTAGCCCCACGGCTTGCTGTTCTGCATGATGAGATGCACGACCTTCCG
AACGGGGAGCTGGGGCAACGGTTTGCTGTTCTGCATGATGAGATGCACGA
CCTTCCGAACGGGGAGCTGGGGCAACTTTCTCTCTCTCCCGCTCTTTTGC
ATGATGAGAGCCTAGATTCGTTTATCCTTGGTGGGAGATGACGCTGTCAC
TCCCCCTCTTGTTCTTTTAATACCGACTGACTTATTCCCCTGTATCGCAC
ACCTCACTCAGGCGCAATTGCAGTTTTGCAGGCTATGACATTTGAAAATA
GTTTCACCCACTGTCGCGCAAGCCGCGGCTAAAGATCCTGGCCTTTGTCC
CGACGTCCAACGACTCTACTGCCCGATTCACGTACCTTTGTCATGCGGAC
ACGTCTTCACGTTCCCTTGCAGCGATGACTTGTTTAATTTCGGTGGACGG
AACAGCCCGTGCGTGTGCCTCCGCTATACGCTATATCATCTGCATCGCAA
CGTACCATCATCACCAGCCGCCGAGTCGGCCCTCGTTTGTCTCTCCATGT
CTTATTCTTCGTTAACCCCAGGACAGCAGTGTTGCTGCTTTGTGTTTGCG
CGGTGGTAAAGTGTTACTGCCACTCGATTGTCAGAAAACTTGACCCCCAG
ACCCGCCGTCCTTGTTGCTGCCGTGTTTTTTCCGCGCAACAACGTAGGGT
TTCCGCCATGCCCCTTCCTCCAAGGATGGTTGCGTTCTCTGGGTAAAACT
TCGGCAGCACGGAGGCCCTTCTCGGAGGCACGTTCGGCTCGACACCAAAA
GTTTGCACTGGCAAGATACGGATACGCCAGGAGTTAAGGTCAAAGCTCTT
TACTCGTGAGTCTGCCTGACATTCTGCCCTCCCATGTGCTTATGTATCGC
ATGGAAGGGCCTAGGGCCATACCGCGTAATTTTGTGGCCTCTGAAGAGCG
TGCTTCGAATATGTTTTGCATGTTTTCGGATGGCGGTATCGCGACTTCTA
GACCCACTCTGCCTCCAGTCCAGAACATACGCCCCCACTCGCAGGTGCAT
GCGTGTGATGTCGTGAATATCTTGGCTTCAACTAGATATTCTGCTCTTGA
GAGCTTGCCAGCGAAGGTAAACATGAAAAATTGGCTGTTGACGCTTTCAA
GTGTTCCGCCCATCATTTCTGCCGGGAAGGAATCACCCACTACAAAAAAT
CTTGAAAGGATCTCAGCGAAATGGCGTTGTCGTTGGCCGAGTATTCTGGC
GGCGTGCCGCGTGATCTCACTGTACTGCGTGCGCTAACACTAACGCTGAG
CGCGAGTTAAGCAACTCAACTGTTCTTTTTTCGTCCAATACCTTGTGATG
GCAGTTTTGTAGCAGAAGCAGACTGCATCCCGCCTGGGGCACCATCATCT
CAACAAGACTCTTGCATTGATAGATCGAAACACCACCCTCACCATGGAAC
AGACACGTGCCAAAGGGAGGGAGCTACAGTAGTACCGACTAGCGTGGGTT
TGTCTCTGAAGAACATAAACGGCCTGGCGGCGCGAAACTGATCGCAACTC
GTCGATTTCAACGATCTAATGTTTCATAGCGTAACTTGAAACCGAGACCT
TCCCTCTCCCCCCTAGGCACCCGGCGCACCCCGAGTCGATGCGGATCGAG
AAATGGGAGGCCGGCGCTAAGGTGGAGCGTGAATGCCCAAGAATAACTGA
GCTTCTTGTGCTTGAGGGGCAGGCTCGTGACGGTGAGATGCAACCGTCTC
CGGAACGTTGTGTCTTCTTTTCTCGCCGGCATGCCGTGGGTCTGCTTCCA
GAGAACAGCATCCTTCACTCGAAGGAATTTTTGGAAGATTCGCAGCAAGA
AAGTACGTGTTGTTCGTCACCTGAAGGAGGGGTGGGCTGATGGCTTCATC
ACAATCTCGTTTGCATGTTGATTGTGTGTTTGGCACTGTCCTCATCTTGT
TGTCGAGCACGAAGGGGCAAGACGGGATGACGCCCGTGGAAGACGATGCC
GTACCTTGAACTTCGACATCTCTACTGGCAACCACCACGGCGGTAAAACT
CGAAGTGTACACAATCGTATGATGGTAAACATTCCATGGCTTTCCTTACC
TTTCTAGGCATCTGCGCGAGACTCAGATAATCATAACGAACGACCCAGGG
GATATTTTCCTGGTTAAAGTCTTCAGCCCTGCCTTTTACCCTTCCCCGTG
CGAATCTGTGACCTTTCGTTGCAAATGACTTGGAATTCAACTCTTCGCCA
ATTGTGCTTTAACTTGTTGCGCGCTCAGCGAGCGAGACCTTCGAGCCACG
CAGCTGGCTTAGGCTCCCCGCGGGAGCAGCCCTTTCCATGTCATCGACCT
CAGGCTGTGACATCTTCATCAAGGAGGGAGAGTGGTTGCCACCCATTGCC
GAGGAAACGTGAAGTTTTTCTTCTCTTCTCAATTCCTTGAGCAGAGCTGA
CCCATGGCATGCTTGAGGCAGATATACCTGGGAAGCTGATGTTCATGATC
GACTAGACCGGCGTACCCTATTTGGAATGAAATAAATGTGGGCATTCATA
TTGAAAGGCTTCCTGGTAGATTCGTTTTTACGAAGCAGGAGGGTGGGTTC
GCGTGTATGGCTTCGGCCAACACCTTGGCTGTACTGGGAAGGGGACGAGG
GGTTCAAGGATGAAGGTGATTTGTTCCGAACCATACACCGACGATGGCGA
CGCGACCCAGTTTTGCCCCGTACTTCAAGTTATGTGACAAGTGACGAGAG
CACTGGCACGCAAGGGGTGGCGGGAGTCGGATAGACGACCGACGATGTGC
TTTGCCTTCTATTCATTCGGCAAGTGGACTCCGTACGCCTCTGCTCTTGT
GGTCGGGAATATTTAAGACGTCTATTTCGTGTCGGTAATCAAAATGTTTT
TTCATGTCTACGTCAGATGAGAGCAGCGTGAGGGATAGTTTGCCATTTCG
TGTTCGCTCCCCACTCCCCCCTCCCCCATTCACTTTCGGAGTAGCCGGCA
TTTGGATCCCGCCGTGGTGCTATACGTAGCTCTCTCCGCTAGGTATTTGA
GGCGATGTGGAAACGCGTTAGGGAAGTGTGC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1012:160..5440-

>mRNA_H-canaliculatus_F_contig1012.145.1 ID=mRNA_H-canaliculatus_F_contig1012.145.1|Name=mRNA_H-canaliculatus_F_contig1012.145.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1362bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1012:160..5440- (Hapterophycus canaliculatus Oshoro5f female)
ATGCCATACAGAACAAGATCCTAATGCCATACAGAACAAGATCCTACGTG
CGCGTGTGCGTCCACACGAGCGCAATGGAGTGGGCCCCTTCTCCGTCTCC
CTCTGTGTGGAGAAAACGAGTAGCTCTCGAAGGCCCTCAAGAATCGGGGA
GGGTCACGTCTGTGCGTGCGCGTGTGCGTCCACACGAGCGCAATGGAGTG
GGCCCCTTCTCCGTCTCCCTCTGTGTGGAGAAAACGAGTAGCTCTCGAAG
GCCCTCAAGAATCGGGGAGGGTCACGTCTGTGGTACGGTACGATGCCAAC
AGTAAATTCAACGAGCACGGACACCCCGACGGCGAAGAAATCCTGGTTCT
CGAGGGATCGTGGCAAGGTACGGTACGATGCCAACAGTAAATTCAACGAG
CACGGACACCCCGACGGCGAAGAAATCCTGGTTCTCGAGGGATCGTGGCA
AGACGAAAACGGGGAACATCCCGCAGGCACATACATGCTCAATCCAGAGA
CGAAAACGGGGAACATCCCGCAGGCACATACATGCTCAATCCAGAGGGTT
TCCGCCATGCCCCTTCCTCCAAGGATGGTTGCGTTCTCTGGGTAAAACTT
CGGCAGCACGGAGGCCCTTCTCGGAGGCACGTTCGGCTCGACACCAAAAG
TTTGCACTGGCAAGATACGGATACGCCAGGAGTTAAGGTCAAAGCTCTTT
ACTCGGTTTCCGCCATGCCCCTTCCTCCAAGGATGGTTGCGTTCTCTGGG
TAAAACTTCGGCAGCACGGAGGCCCTTCTCGGAGGCACGTTCGGCTCGAC
ACCAAAAGTTTGCACTGGCAAGATACGGATACGCCAGGAGTTAAGGTCAA
AGCTCTTTACTCGCACCCGGCGCACCCCGAGTCGATGCGGATCGAGAAAT
GGGAGGCCGGCGCTAAGGTGGAGCGTGAATGCCCAAGAATAACTGAGCTT
CTTGTGCTTGAGGGGCAGGCTCGTGACGGCACCCGGCGCACCCCGAGTCG
ATGCGGATCGAGAAATGGGAGGCCGGCGCTAAGGTGGAGCGTGAATGCCC
AAGAATAACTGAGCTTCTTGTGCTTGAGGGGCAGGCTCGTGACGCGAGCG
AGACCTTCGAGCCACGCAGCTGGCTTAGGCTCCCCGCGGGAGCAGCCCTT
TCCATGTCATCGACCTCAGGCTGTGACATCTTCATCAAGGAGGGAGAGTG
GTTGCCACCCATTGCCGAGGAAACGTGACGAGCGAGACCTTCGAGCCACG
CAGCTGGCTTAGGCTCCCCGCGGGAGCAGCCCTTTCCATGTCATCGACCT
CAGGCTGTGACATCTTCATCAAGGAGGGAGAGTGGTTGCCACCCATTGCC
GAGGAAACGTGA
back to top