mRNA_H-canaliculatus_F_contig1164.1447.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1164.1447.1
Unique NamemRNA_H-canaliculatus_F_contig1164.1447.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1164.1447.1 vs. uniprot
Match: A0A6H5KLR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLR4_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 5.320e-50
Identity = 93/174 (53.45%), Postives = 119/174 (68.39%), Query Frame = 3 
Query:  432 LARQAYAIIAETTINNLPSGEKAVELVVRRVREHWIGQQEHLKEMVAGLFGVKAVHSAILWWWESLVDLLKTNSEQPPDSKRALAHGKARGEECFVKQKEFSPASAIVTEAINLGVDKQRVNQSLTSFFGALDEVADRTLAQQLAAAHTIQVTYPTHDVELDMHQRRIVHNIGG 953
            LARQ YA +AE  +  LP+G + ++ V  R+R HW+GQ    K +V GL  V+ V  AIL WW  LV  L  NS++PP SKRALA+ K R EE F KQ+EFS   +IV +A+ LGVD +RV   LT  FGA+DEVAD+TL QQ  AAH ++V YP  DV+LD+HQRR+V+NI G
Sbjct:    3 LARQTYAAMAEIVVKQLPTGARLIDWVGERLRVHWMGQVPEYKHIVVGLLDVQEVKDAILGWWGVLVGALVENSKKPPSSKRALAYEKKREEERFPKQEEFSSEPSIVRKALELGVDSRRVAHKLTCVFGAIDEVADKTLTQQTDAAHLVKVAYPAEDVDLDVHQRRLVYNIAG 176
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BLAST of mRNA_H-canaliculatus_F_contig1164.1447.1 vs. uniprot
Match: A0A6H5JWF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF8_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.520e-22
Identity = 55/108 (50.93%), Postives = 69/108 (63.89%), Query Frame = 1 
Query:  952 GWLLSTILSRVKRQPSKGSGFLPFVNSHKYASAAESREAHPDFSGLEFLVEDRNIEYRGKGLIFPSAEFYLFVRAL*VGYRHAMINPALLATYLGDLPAEVKKVVSTA 1275
            GWLLS+ LS V R       F  FVNSH+Y  AA+  + HP   GLE  V+ RN+++RG  LIF  A F+ FV  L  GY HA+  PAL ATY GDLPA++ +VVS+A
Sbjct:   78 GWLLSSALSHVTRHKRDCPAFTSFVNSHQYEDAAQFVKVHPGLKGLEREVDRRNVKWRGLSLIFADASFFEFVYTLEDGYLHALKQPALFATYQGDLPAKILEVVSSA 185
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BLAST of mRNA_H-canaliculatus_F_contig1164.1447.1 vs. uniprot
Match: A0A6H5KPL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPL9_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 3.450e-22
Identity = 55/108 (50.93%), Postives = 69/108 (63.89%), Query Frame = 1 
Query:  952 GWLLSTILSRVKRQPSKGSGFLPFVNSHKYASAAESREAHPDFSGLEFLVEDRNIEYRGKGLIFPSAEFYLFVRAL*VGYRHAMINPALLATYLGDLPAEVKKVVSTA 1275
            GWLLS+ LS V      G  F  FVNSH+Y  AA+  + HP   GLE  V+ RN+++RG  LIF  A F+ FV  L  GY HA+  PAL ATY GDLPA++ +VVS+A
Sbjct:  187 GWLLSSALSHVTSHKRDGPAFTSFVNSHQYEDAAQFVKVHPGLKGLEREVDRRNVKWRGLSLIFADASFFEFVYTLEDGYLHALKQPALFATYQGDLPAKILEVVSSA 294
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BLAST of mRNA_H-canaliculatus_F_contig1164.1447.1 vs. uniprot
Match: A0A6H5K2P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P3_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.790e-13
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 1 
Query: 1033 HKYASAAESREAHPDFSGLEFLVEDRNIEYRGKGLIFPSAEFYLFVRAL*VGYRHAMINPALLATYLGDLPAEVKKVVSTA 1275
            H+Y  AA+  + HP   GLE  V+ RN+++RG  LI   A F+ FV  L  GY HA+  PAL ATY GDLPA++ +VVS+A
Sbjct:  117 HQYEDAAQFVKVHPGLKGLEREVDRRNVKWRGLSLIVADASFFEFVYTLEDGYLHALKQPALFATYQGDLPAKILEVVSSA 197
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BLAST of mRNA_H-canaliculatus_F_contig1164.1447.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 8.070e-7
Identity = 39/107 (36.45%), Postives = 57/107 (53.27%), Query Frame = 1 
Query:  952 GWLLSTILSRVKRQPSKGSGFLPFVNSHKYA-SAAESREAHPDFSGLEFLVEDRNIEYRGKGLIFPSAEFYLFVRAL*VGYRHAMINPALLATYLGDLPAEVKKVVS 1269
            GWLLS   SR +R       +  F+  H ++ S+A + E  P    +   V+ RN    G GL+FP+  +Y FV  +  G  H + +P  L TYLGDL AE+ +VV+
Sbjct:  148 GWLLSKAWSRKRRHNIPDQEW-DFIVQHNHSPSSAGAIERDPILQDMVGEVDARNDPVNGAGLLFPTLAWYEFVFHVENGIYHFLRDPYFLGTYLGDLSAEILRVVT 253
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BLAST of mRNA_H-canaliculatus_F_contig1164.1447.1 vs. uniprot
Match: A0A6H5K7M3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M3_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 3.020e-5
Identity = 29/82 (35.37%), Postives = 45/82 (54.88%), Query Frame = 1 
Query: 1024 VNSHKYASAAESREAHPDFSGLEFLVEDRNIEYRGKGLIFPSAEFYLFVRAL*VGYRHAMINPALLATYLGDLPAEVKKVVS 1269
            V+ HKY S   +     +  G+   V+ RN   R +GL+F ++ F   +  L  GY H +  PA L +YLG+LP E+ ++VS
Sbjct:  242 VDRHKYPSKRAAEGNEMELRGVTEEVQRRNDPTRPRGLVFVTSLFLKLLLTLESGYFHVLSQPAFLGSYLGNLPEEILRLVS 323
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1164.1447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KLR4_9PHAE5.320e-5053.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWF8_9PHAE2.520e-2250.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPL9_9PHAE3.450e-2250.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2P3_9PHAE1.790e-1349.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW14_9PHAE8.070e-736.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7M3_9PHAE3.020e-535.37Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1164contigH-canaliculatus_F_contig1164:19629..21364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1549
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1164.1447.1prot_H-canaliculatus_F_contig1164.1447.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1164 20232..20780 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928856.1029713-UTR-H-canaliculatus_F_contig1164:19628..199121622928856.1029713-UTR-H-canaliculatus_F_contig1164:19628..19912Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1164 19629..19912 +
1696845590.5140414-UTR-H-canaliculatus_F_contig1164:19628..199121696845590.5140414-UTR-H-canaliculatus_F_contig1164:19628..19912Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1164 19629..19912 +
1622928856.1177914-UTR-H-canaliculatus_F_contig1164:19952..202311622928856.1177914-UTR-H-canaliculatus_F_contig1164:19952..20231Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1164 19953..20231 +
1696845590.5226948-UTR-H-canaliculatus_F_contig1164:19952..202311696845590.5226948-UTR-H-canaliculatus_F_contig1164:19952..20231Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1164 19953..20231 +
1622928856.1623988-UTR-H-canaliculatus_F_contig1164:20780..213641622928856.1623988-UTR-H-canaliculatus_F_contig1164:20780..21364Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1164 20781..21364 +
1696845590.5482962-UTR-H-canaliculatus_F_contig1164:20780..213641696845590.5482962-UTR-H-canaliculatus_F_contig1164:20780..21364Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1164 20781..21364 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928856.13225-CDS-H-canaliculatus_F_contig1164:20231..205011622928856.13225-CDS-H-canaliculatus_F_contig1164:20231..20501Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1164 20232..20501 +
1696845590.5317485-CDS-H-canaliculatus_F_contig1164:20231..205011696845590.5317485-CDS-H-canaliculatus_F_contig1164:20231..20501Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1164 20232..20501 +
1622928856.1477642-CDS-H-canaliculatus_F_contig1164:20648..207801622928856.1477642-CDS-H-canaliculatus_F_contig1164:20648..20780Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1164 20649..20780 +
1696845590.5401788-CDS-H-canaliculatus_F_contig1164:20648..207801696845590.5401788-CDS-H-canaliculatus_F_contig1164:20648..20780Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1164 20649..20780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1164.1447.1

>prot_H-canaliculatus_F_contig1164.1447.1 ID=prot_H-canaliculatus_F_contig1164.1447.1|Name=mRNA_H-canaliculatus_F_contig1164.1447.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=134bp
MVAGLFGVKAVHSAILWWWESLVDLLKTNSEQPPDSKRALAHGKARGEEC
FVKQKEFSPASAIVTEAINLGVDKQRVNQSLTSFFGALDEVADRTLAQQL
AAAHTIQVTYPTHDVELDMHQRRIVHNIGGLAS*
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mRNA from alignment at H-canaliculatus_F_contig1164:19629..21364+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1164.1447.1 ID=mRNA_H-canaliculatus_F_contig1164.1447.1|Name=mRNA_H-canaliculatus_F_contig1164.1447.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1736bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1164:19629..21364+ (Hapterophycus canaliculatus Oshoro5f female)
GTTTTTCCTTTGCGACCCCCAAGCTGGGCGATTGTCTCTCGGTCCGATAA
TTCCCACCATATTTCAACGGTGAGACTGTCGTGCGAAACGCATGTCGCAC
TCACACTAACTGAAATATTTCCTATGCAGACGTGGGGGGTATAGATGGAG
ACGACGAAGACGACGAGGATCTGCAACGCCTTGTTGAGGCGGTCACCCGT
GCCGCCGGGGCGGAAGAGGAGGAGGAGGAGGAGGCTGAAGAGCAAAAGGA
GGAAGAGAAGACAGTTTATGAGAAAGATAGAGAGGTGAGGGGTTGGAGGG
TACCTTTCTCGGATGCCAAATGAGTTGACGTCGTTTGTTGTTTTCAGCGT
GTTGTGCTGGTTGTGCGGCAACACAAGTGCCGTGAGGTTGGCGACATATT
TTGGATTTTTGATCTCATGAGTGTTCTCTCATGTCGCAGTCGACTGTTGT
GTCCATGTCCGTGTAGTGTTCCTCGCGCGACAGGCCTACGCGATCATAGC
CGAGACGACTATCAACAACCTCCCTTCCGGCGAAAAGGCGGTGGAGCTTG
TTGTGAGGCGTGTTCGTGAACACTGGATAGGGCAACAGGAGCACCTGAAA
GAAATGGTTGCAGGATTGTTCGGAGTCAAGGCCGTGCATTCGGCGATTCT
TTGGTGGTGGGAATCTCTCGTAGATTTGCTCAAGACAAATTCAGAACAAC
CGCCAGACTCAAAACGCGCTCTTGCGCACGGAAAGGCGCGGGGGGAGGAG
TGTTTCGTAAAGCAGAAAGAATTCAGCCCCGCTTCGGCAATCGTGACAGA
GGCAATCAACCTGGGAGTGGACAAGCAGCGTGTCAATCAATCTCTCACCT
CCTTCTTCGGGGCTCTCGACGAGGTCAGTCTGTCCAGAGTAGCGTGTCAG
TAGTCAGAAATGTGTCAGGGTTTACACGTGGATTGGTTCGTACTTGAGGA
GTACGCCGAAAATGCGACGTCCTTCTGCTAACCCCACCCGCCCGCTCTCC
GCGATGCTCCTTGCGGACAGGTCGCCGACAGGACCCTCGCTCAACAATTG
GCCGCCGCTCACACCATTCAAGTGACGTATCCTACACACGACGTGGAGCT
TGACATGCATCAACGGCGAATCGTTCACAACATAGGAGGGTTGGCTTCTT
AGTACCATTCTTTCGCGCGTAAAGAGGCAGCCATCGAAAGGCTCAGGTTT
CTTGCCCTTTGTCAACAGCCACAAGTATGCTTCTGCAGCCGAATCCCGTG
AGGCCCATCCCGATTTTTCCGGTTTGGAATTTCTGGTCGAAGATAGAAAT
ATTGAGTACAGGGGGAAGGGTCTTATTTTCCCCTCAGCTGAATTTTATCT
TTTCGTGCGTGCGCTCTAGGTTGGGTACCGACACGCGATGATAAACCCTG
CACTGTTAGCGACGTATCTGGGAGATTTGCCGGCTGAAGTGAAGAAGGTT
GTGTCCACAGCCTGTATCCGTTTAGACAAAACCGATTGGACAACTGACCA
GTCAGCCTAGTCAGCGCTGACTGGTCAGTAGTCTGACCGATTATCCCTGG
TCGGAAGCAGTGGGTAGTCGTGGGCTCGAATCTCTGTGAAAGCACTTTCT
TTTTTGAGAAGAGTCTGACCTCTCTAGAAAATGAGATTTCCCCACCCGAA
GCCGTGAAGGCGGCATGGACAAGGTGTGTGCGTTATGTGGCGGACCCTTT
CCTCGGTAAAGCTGGGAGGAAGGGGTGTAAAAGGGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1164:19629..21364+

>mRNA_H-canaliculatus_F_contig1164.1447.1 ID=mRNA_H-canaliculatus_F_contig1164.1447.1|Name=mRNA_H-canaliculatus_F_contig1164.1447.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=804bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1164:19629..21364+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTTGCAGGATTGTTCGGAGTCAAGGCCGTGCATTCGGCGATTCTTTG
GTGGTGGGAATCTCTCGTAGATTTGCTCAAGACAAATTCAGAACAACCGC
CAGACTCAAAACGCGCTCTTGCGCACGGAAAGGCGCGGGGGGAGGAGTGT
TTCGTAAAGCAGAAAGAATTCAGCCCCGCTTCGGCAATCGTGACAGAGGC
AATCAACCTGGGAGTGGACAAGCAGCGTGTCAATCAATCTCTCACCTCCT
TCTTCGGGGCTCTCGACGAGATGGTTGCAGGATTGTTCGGAGTCAAGGCC
GTGCATTCGGCGATTCTTTGGTGGTGGGAATCTCTCGTAGATTTGCTCAA
GACAAATTCAGAACAACCGCCAGACTCAAAACGCGCTCTTGCGCACGGAA
AGGCGCGGGGGGAGGAGTGTTTCGTAAAGCAGAAAGAATTCAGCCCCGCT
TCGGCAATCGTGACAGAGGCAATCAACCTGGGAGTGGACAAGCAGCGTGT
CAATCAATCTCTCACCTCCTTCTTCGGGGCTCTCGACGAGGTCGCCGACA
GGACCCTCGCTCAACAATTGGCCGCCGCTCACACCATTCAAGTGACGTAT
CCTACACACGACGTGGAGCTTGACATGCATCAACGGCGAATCGTTCACAA
CATAGGAGGGTTGGCTTCTTAGGTCGCCGACAGGACCCTCGCTCAACAAT
TGGCCGCCGCTCACACCATTCAAGTGACGTATCCTACACACGACGTGGAG
CTTGACATGCATCAACGGCGAATCGTTCACAACATAGGAGGGTTGGCTTC
TTAG
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