mRNA_H-canaliculatus_F_contig1164.1446.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1164.1446.1
Unique NamemRNA_H-canaliculatus_F_contig1164.1446.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1164.1446.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.460e-36
Identity = 80/136 (58.82%), Postives = 97/136 (71.32%), Query Frame = 2 
Query: 1106 SQTLQVSTVCGFCGGEGCRTTIKNPPCKAAPLIRSTCPSATRRDARHEAVVVSLKSAGAGSKASPCSNIAMKCILCSQETFIWKYVTADHVTRCHKEDALVKEGTEVATNFKRAYTILESEKAMVLGKLRGRNPRR 1513
            ++T  VSTVCGFCGG GCR+TI +PP +A PL+ STCPSA R DAR EAV ++L SA A S  SPC+N+ +KC LCSQ+ +IW Y   DHVTRCH+ + LV  GT  A  FK A TI ESEKA VL K++   PRR
Sbjct: 1083 NKTSPVSTVCGFCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLSSARADSDTSPCTNMVLKCFLCSQDNYIWNYGMFDHVTRCHQANVLVAVGTG-ADKFKEACTISESEKAKVLHKVKAGRPRR 1217
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BLAST of mRNA_H-canaliculatus_F_contig1164.1446.1 vs. uniprot
Match: D7FNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW9_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.270e-14
Identity = 43/79 (54.43%), Postives = 54/79 (68.35%), Query Frame = 2 
Query: 1310 IAMKCILCSQETFIWKYVTADHVTRCHKEDALVKEGTEVATNFKRAYTILESEKAMVLGKLRGRNPRRCR--SDGLPQG 1540
            + +KC+ CSQ+T+IWKY  ++HVTRCH+ED LV  GT V   FK AYTI ESEKA VL K +   PRR    ++ LP G
Sbjct:    1 MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGTTV-DRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALPTG 78
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BLAST of mRNA_H-canaliculatus_F_contig1164.1446.1 vs. uniprot
Match: A0A6H5K5R3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R3_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 2.000e-9
Identity = 43/100 (43.00%), Postives = 56/100 (56.00%), Query Frame = 2 
Query: 1310 IAMKCILCSQETFIWKYVTADHVTRCHKEDALVKEGTEVATNFKRAYTILESEKAMVLGKLRGRNPRRCRSDG---LPQG----------TSRGLPGTRA 1570
            + +KC +CSQ  +IWKY  ++HVTR H+ED  V  GT V   FK AY+I ESEKA  L K +   PR+ R  G   LP G          + R + GTR+
Sbjct:    1 MVLKCFVCSQNNYIWKYGMSEHVTRRHQEDMRVAAGTGV-DKFKEAYSISESEKAKALHKFKAGKPRQ-RGQGNEVLPPGALGRTEGNGASGRNMAGTRS 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1164.1446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K6M3_9PHAE1.460e-3658.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
D7FNW9_ECTSI1.270e-1454.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5R3_9PHAE2.000e-943.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1164contigH-canaliculatus_F_contig1164:10336..12090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1600
Cds size723
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1164.1446.1prot_H-canaliculatus_F_contig1164.1446.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1164 10336..11058 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928856.0437057-CDS-H-canaliculatus_F_contig1164:10335..110581622928856.0437057-CDS-H-canaliculatus_F_contig1164:10335..11058Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1164 10336..11058 -
1696845590.4829817-CDS-H-canaliculatus_F_contig1164:10335..110581696845590.4829817-CDS-H-canaliculatus_F_contig1164:10335..11058Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1164 10336..11058 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928856.0540566-UTR-H-canaliculatus_F_contig1164:11058..114951622928856.0540566-UTR-H-canaliculatus_F_contig1164:11058..11495Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1164 11059..11495 -
1696845590.4951246-UTR-H-canaliculatus_F_contig1164:11058..114951696845590.4951246-UTR-H-canaliculatus_F_contig1164:11058..11495Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1164 11059..11495 -
1622928856.0670855-UTR-H-canaliculatus_F_contig1164:11650..120901622928856.0670855-UTR-H-canaliculatus_F_contig1164:11650..12090Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1164 11651..12090 -
1696845590.5052986-UTR-H-canaliculatus_F_contig1164:11650..120901696845590.5052986-UTR-H-canaliculatus_F_contig1164:11650..12090Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1164 11651..12090 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1164.1446.1

>prot_H-canaliculatus_F_contig1164.1446.1 ID=prot_H-canaliculatus_F_contig1164.1446.1|Name=mRNA_H-canaliculatus_F_contig1164.1446.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=241bp
MLLGTIKLESAEIVNVDVAMLPPPETLKALRCPPLLLFRETDHFVYKRSV
SSWSLLHKIVCIFQATAGRPRYLFVLSQTLQVSTVCGFCGGEGCRTTIKN
PPCKAAPLIRSTCPSATRRDARHEAVVVSLKSAGAGSKASPCSNIAMKCI
LCSQETFIWKYVTADHVTRCHKEDALVKEGTEVATNFKRAYTILESEKAM
VLGKLRGRNPRRCRSDGLPQGTSRGLPGTRAKPTCTKRTVI
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mRNA from alignment at H-canaliculatus_F_contig1164:10336..12090-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1164.1446.1 ID=mRNA_H-canaliculatus_F_contig1164.1446.1|Name=mRNA_H-canaliculatus_F_contig1164.1446.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1755bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1164:10336..12090- (Hapterophycus canaliculatus Oshoro5f female)
CAACCCGAGTGTCGAGCTGGACGCCTTCCTCCGAGAGAATGAAAGTGGGG
GGAATCAGGGATCGCCCTACTGCCGTGTCGATAGGAAGCATGTGCACAAG
CAGCGGGTTCTGACAGAGTTGATGGGATCGTAGTTTGTCAGCGCGTCGAG
AGATCGGGTGAAGCGCGTGCGAGACCCTCCTACGGGGCGATCAAGCGTTT
CGGTCTTGCCCGGTGTCAGAGCTGGGGATTCTCACTCCTCCGGAATGGCA
ACACAAATGCGCGAAGCTCGGGTGTTGGGGATCCATTTCGATGAGGATGG
TTGCGACACGTCCAGGCCAGTTCACCCTCGGTTTGTTCTCTTGCACTTCA
ACGCCGAGGGAGGAGACCCGGGAAGGTACTGAAGAAGCTATCAAAGGGAG
GTCGATAAAGCTCCGGCGGACAAGGAGTCGCTGGAGGTAGGCGAGGGAGC
TTCCACTCCAGGCGCCTCTTCGGCGACAAGCAATGTGCCTGTCGAGGACG
TGTGGAGTCACTGGGGGGAGTTGAGGATGCACACAGGAGAACTACCGTGC
AAGTGTCGCCTCGTCTTGCCGCTGAATCCTGACGTGATCCATGAGCTTGT
CGTGGTGAAGGAGACCGTGACACACACGGTCCTCGGTACTGCGCCCCTAC
GACGCACGAGACGGTAGAGACGGAAAAGGTTTCGGCCCATACCGCCTTTC
AGTTCAGTCCTAGCGACCTCGTCGCAGTTAAAGCCCTCCTCGTCGAAGAA
GTTGGCACGCTCAAGGCTTGGCGATATGTTCCTCTTCACAACATCGCTCG
CGCCGACGTCACCTCCCTTCCAATTCACGAGGATACACTGCATATTGAGG
CTGACATTGCATATTGAGGCTTATACAGTGGGTGCAACCCCTGCCGCTGG
ATCGGGTACGAGAAGATTTGGTGCAAGGTGTGCCTAGCCCGGGTCCCGCG
ATCGAAAATGAGGATGCATGACCGCGGGTACATTGTATAGGACCAGGTGT
GCTACTTTGCGTTTTGAGAGGACCGTATTCTGATGCTTCTTGGAACCATT
AAACTAGAGAGCGCAGAAATTGTTAACGTTGATGTCGCCATGTTGCCCCC
ACCTGAAACGCTCAAAGCGCTTCGTTGCCCGCCGTTGCTGCTTTTCCGAG
AAACAGATCATTTTGTGTACAAGCGAAGTGTTTCATCGTGGTCTCTACTG
CATAAAATCGTCTGTATATTTCAGGCAACAGCTGGCCGTCCACGCTATTT
GTTTGTTCTATCTCAGACTCTACAGGTCAGCACTGTATGCGGCTTCTGCG
GCGGTGAAGGATGCCGTACAACAATCAAGAATCCACCCTGCAAGGCGGCG
CCCCTCATACGCTCGACCTGTCCATCTGCTACTCGGAGGGACGCACGTCA
TGAGGCTGTCGTTGTTAGCCTGAAAAGTGCGGGAGCTGGTTCGAAAGCAT
CGCCGTGCAGCAACATCGCCATGAAATGCATATTATGCTCGCAAGAGACG
TTTATATGGAAGTATGTGACGGCCGACCACGTCACGAGATGTCACAAAGA
GGACGCGCTAGTCAAGGAGGGTACAGAAGTCGCAACCAACTTCAAGCGGG
CCTACACTATCTTGGAGAGCGAGAAGGCCATGGTGCTGGGAAAGCTGAGA
GGCAGAAATCCTCGCCGGTGTCGCAGCGACGGCCTTCCCCAGGGGACAAG
TCGGGGCTTGCCGGGGACCCGCGCCAAGCCTACGTGCACCAAGCGCACGG
TCATC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1164:10336..12090-

>mRNA_H-canaliculatus_F_contig1164.1446.1 ID=mRNA_H-canaliculatus_F_contig1164.1446.1|Name=mRNA_H-canaliculatus_F_contig1164.1446.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1446bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1164:10336..12090- (Hapterophycus canaliculatus Oshoro5f female)
ATGCTTCTTGGAACCATTAAACTAGAGAGCGCAGAAATTGTTAACGTTGA
TGTCGCCATGTTGCCCCCACCTGAAACGCTCAAAGCGCTTCGTTGCCCGC
CGTTGCTGCTTTTCCGAGAAACAGATCATTTTGTGTACAAGCGAAGTGTT
TCATCGTGGTCTCTACTGCATAAAATCGTCTGTATATTTCAGGCAACAGC
TGGCCGTCCACGCTATTTGTTTGTTCTATCTCAGACTCTACAGGTCAGCA
CTGTATGCGGCTTCTGCGGCGGTGAAGGATGCCGTACAACAATCAAGAAT
CCACCCTGCAAGGCGGCGCCCCTCATACGCTCGACCTGTCCATCTGCTAC
TCGGAGGGACGCACGTCATGAGGCTGTCGTTGTTAGCCTGAAAAGTGCGG
GAGCTGGTTCGAAAGCATCGCCGTGCAGCAACATCGCCATGAAATGCATA
TTATGCTCGCAAGAGACGTTTATATGGAAGTATGTGACGGCCGACCACGT
CACGAGATGTCACAAAGAGGACGCGCTAGTCAAGGAGGGTACAGAAGTCG
CAACCAACTTCAAGCGGGCCTACACTATCTTGGAGAGCGAGAAGGCCATG
GTGCTGGGAAAGCTGAGAGGCAGAAATCCTCGCCGGTGTCGCAGCGACGG
CCTTCCCCAGGGGACAAGTCGGGGCTTGCCGGGGACCCGCGCCAAGCCTA
CGTGCACCAAGCGCACGGTCATCATGCTTCTTGGAACCATTAAACTAGAG
AGCGCAGAAATTGTTAACGTTGATGTCGCCATGTTGCCCCCACCTGAAAC
GCTCAAAGCGCTTCGTTGCCCGCCGTTGCTGCTTTTCCGAGAAACAGATC
ATTTTGTGTACAAGCGAAGTGTTTCATCGTGGTCTCTACTGCATAAAATC
GTCTGTATATTTCAGGCAACAGCTGGCCGTCCACGCTATTTGTTTGTTCT
ATCTCAGACTCTACAGGTCAGCACTGTATGCGGCTTCTGCGGCGGTGAAG
GATGCCGTACAACAATCAAGAATCCACCCTGCAAGGCGGCGCCCCTCATA
CGCTCGACCTGTCCATCTGCTACTCGGAGGGACGCACGTCATGAGGCTGT
CGTTGTTAGCCTGAAAAGTGCGGGAGCTGGTTCGAAAGCATCGCCGTGCA
GCAACATCGCCATGAAATGCATATTATGCTCGCAAGAGACGTTTATATGG
AAGTATGTGACGGCCGACCACGTCACGAGATGTCACAAAGAGGACGCGCT
AGTCAAGGAGGGTACAGAAGTCGCAACCAACTTCAAGCGGGCCTACACTA
TCTTGGAGAGCGAGAAGGCCATGGTGCTGGGAAAGCTGAGAGGCAGAAAT
CCTCGCCGGTGTCGCAGCGACGGCCTTCCCCAGGGGACAAGTCGGGGCTT
GCCGGGGACCCGCGCCAAGCCTACGTGCACCAAGCGCACGGTCATC
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