mRNA_H-canaliculatus_F_contig11637.1444.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11637.1444.1
Unique NamemRNA_H-canaliculatus_F_contig11637.1444.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11637.1444.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 2.750e-12
Identity = 30/46 (65.22%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   70 TEVPPEVLELIRANQLASDWNGNPWSRPPLTVLSSGLESALGWWND 207
            TE+PPEVLEL R       W+ NPWSRPP TVL SG E ALGWW D
Sbjct:  226 TEIPPEVLELCREILGEPSWHANPWSRPPSTVLESGFERALGWWED 271
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11637.1444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKS5_ECTSI2.750e-1265.22LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11637contigH-canaliculatus_F_contig11637:1754..2723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size209
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928855.9441192-CDS-H-canaliculatus_F_contig11637:1755..18891622928855.9441192-CDS-H-canaliculatus_F_contig11637:1755..1889Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11637 1756..1889 -
1696845590.446196-CDS-H-canaliculatus_F_contig11637:1755..18891696845590.446196-CDS-H-canaliculatus_F_contig11637:1755..1889Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11637 1756..1889 -
1622928855.964062-CDS-H-canaliculatus_F_contig11637:2650..27231622928855.964062-CDS-H-canaliculatus_F_contig11637:2650..2723Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11637 2651..2723 -
1696845590.4548838-CDS-H-canaliculatus_F_contig11637:2650..27231696845590.4548838-CDS-H-canaliculatus_F_contig11637:2650..2723Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11637 2651..2723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11637.1444.1prot_H-canaliculatus_F_contig11637.1444.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11637 1756..2723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11637.1444.1

>prot_H-canaliculatus_F_contig11637.1444.1 ID=prot_H-canaliculatus_F_contig11637.1444.1|Name=mRNA_H-canaliculatus_F_contig11637.1444.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=69bp
GPIPATLGKLAALGMLDIRDNQLTEVPPEVLELIRANQLASDWNGNPWSR
PPLTVLSSGLESALGWWND
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mRNA from alignment at H-canaliculatus_F_contig11637:1754..2723-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11637.1444.1 ID=mRNA_H-canaliculatus_F_contig11637.1444.1|Name=mRNA_H-canaliculatus_F_contig11637.1444.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=970bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11637:1754..2723- (Hapterophycus canaliculatus Oshoro5f female)
GGCCCCATCCCGGCAACGCTGGGAAAGCTCGCAGCACTGGGGATGCTCGA
TATTCGCGACAACCAACTAACAGGTGAGTGATTTGCGCGAGCTTCGGTAT
GAAGCCCGCCGATGCCTAGGCAGGGCCGTCGTAGGCTGGGAGGCGTCCTG
TAACATATGGGACGTGCAGGATCTAGAACGCTTTGGGCGTCCAGCAATCA
GCTCACCGGGCAGGGCAGCAATACCATGATATGCCTCGAAAACATTAGAC
TATGCAGTGATGGGTTGTTTTGCGTTATGTTCTCAATCTTGCCGAATTTA
TGTACTTCGGACGCAGTACACATGTTGTAGACGATTGAAGTCATGCCCGC
TCGGGTCGCTGAGAGCTCGCAGTGCCATAGGAATGGGCCCTGAACATACA
AACAACAATTGACGCTGGTTGAGGGTTGAGGCTTCAAGGGATGTTTTGCT
GCCTGTGCTGAGGTCGAGAACGGCCGAAGGTAGCACCCCTTGGCAATTAA
CCCAGTGGTCAGAAGCCCAGTGAACAAAATGGATTGTAAGGCCCTCTGAG
TCACGAGCCAAACCCCTTCGCTTTCTGTAGCAACGGTTGGCTGTGAGGGT
GGAGTGTACACTTCGACCGCCGGAGGTGATGGCCGTATTAGTATTTGATT
GCGGTGACCAACACTCCCTCGAAGACGCTGGTGAGGTTTCAAGATGTCAC
CTGGTGTTAGATTGACCCATATCATGCAAATTGCGGAATGGTCTTCGAGA
TTCGGGAATGTTGCGGTATCGCCTTTTTAAGGTTTCCGTGGCCGCAATCT
GACATGTATGCTCGTGCTGTATTCGGGCGTGCAGAAGTCCCGCCAGAGGT
CCTCGAGCTGATTCGGGCAAATCAACTAGCGTCAGACTGGAACGGTAACC
CTTGGTCACGGCCGCCCCTTACGGTGTTAAGTTCTGGGTTGGAGAGTGCA
CTGGGCTGGTGGAACGACGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11637:1754..2723-

>mRNA_H-canaliculatus_F_contig11637.1444.1 ID=mRNA_H-canaliculatus_F_contig11637.1444.1|Name=mRNA_H-canaliculatus_F_contig11637.1444.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=414bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11637:1754..2723- (Hapterophycus canaliculatus Oshoro5f female)
GGCCCCATCCCGGCAACGCTGGGAAAGCTCGCAGCACTGGGGATGCTCGA
TATTCGCGACAACCAACTAACAGGGCCCCATCCCGGCAACGCTGGGAAAG
CTCGCAGCACTGGGGATGCTCGATATTCGCGACAACCAACTAACAGAAGT
CCCGCCAGAGGTCCTCGAGCTGATTCGGGCAAATCAACTAGCGTCAGACT
GGAACGGTAACCCTTGGTCACGGCCGCCCCTTACGGTGTTAAGTTCTGGG
TTGGAGAGTGCACTGGGCTGGTGGAACGACAAGTCCCGCCAGAGGTCCTC
GAGCTGATTCGGGCAAATCAACTAGCGTCAGACTGGAACGGTAACCCTTG
GTCACGGCCGCCCCTTACGGTGTTAAGTTCTGGGTTGGAGAGTGCACTGG
GCTGGTGGAACGAC
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