mRNA_H-canaliculatus_F_contig11624.1434.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11624.1434.1
Unique NamemRNA_H-canaliculatus_F_contig11624.1434.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11624.1434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11624contigH-canaliculatus_F_contig11624:96..687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size592
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928855.0603657-CDS-H-canaliculatus_F_contig11624:95..3951622928855.0603657-CDS-H-canaliculatus_F_contig11624:95..395Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11624 96..395 +
1696845590.1077833-CDS-H-canaliculatus_F_contig11624:95..3951696845590.1077833-CDS-H-canaliculatus_F_contig11624:95..395Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11624 96..395 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928855.0810747-UTR-H-canaliculatus_F_contig11624:395..6871622928855.0810747-UTR-H-canaliculatus_F_contig11624:395..687Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11624 396..687 +
1696845590.1185856-UTR-H-canaliculatus_F_contig11624:395..6871696845590.1185856-UTR-H-canaliculatus_F_contig11624:395..687Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11624 396..687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11624.1434.1prot_H-canaliculatus_F_contig11624.1434.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11624 96..395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11624.1434.1

>prot_H-canaliculatus_F_contig11624.1434.1 ID=prot_H-canaliculatus_F_contig11624.1434.1|Name=mRNA_H-canaliculatus_F_contig11624.1434.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=100bp
RGRRRRRVAPSLLEKRREKTTLSSSSLSSLSSFWLFLGSNSRGDPRRRRR
LSLPAPPRRGSSSGDRIETSPFSSCRKELESPRPSHHPSFGIKPVCLIA*
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mRNA from alignment at H-canaliculatus_F_contig11624:96..687+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11624.1434.1 ID=mRNA_H-canaliculatus_F_contig11624.1434.1|Name=mRNA_H-canaliculatus_F_contig11624.1434.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=592bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11624:96..687+ (Hapterophycus canaliculatus Oshoro5f female)
CGTGGCAGGCGCAGACGGCGTGTAGCGCCGTCGTTGCTCGAAAAACGGCG
AGAAAAAACGACGCTGTCCTCGTCGTCGTTGTCGTCGTTGTCGTCGTTTT
GGTTGTTTCTAGGGTCGAATTCACGCGGAGATCCTCGACGTCGTCGCCGA
CTGAGCCTCCCCGCCCCACCTCGCAGGGGAAGCTCATCAGGGGATAGGAT
CGAAACGTCCCCGTTTTCAAGTTGTAGAAAGGAATTAGAATCCCCCCGCC
CCTCCCACCATCCCAGTTTTGGAATTAAACCAGTTTGTTTGATCGCATAG
GGTCGGGACCATAATTTGAATCTGTGTGCCCTCTTGATCACAGCCAGACG
TGGATCCGTAGATAAGATCAATCGGCAACATAGATGGTACCCCGAAGTCC
AAATCATACAGATACGGAACCCCCAGAACCCCCGCAACGCTGTTGGGTGG
ATTCCGTACTTGAAACAATCTGACAACGCTGAGAGTATACTTTACATGTG
TCCCGCCCCCTGCTACCCGTCCCTCGCCCCCCTCCTCTATCATTAGCTTC
GCCACACACTCACACACACACCAAGCGCCGAGCAGATCAAAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11624:96..687+

>mRNA_H-canaliculatus_F_contig11624.1434.1 ID=mRNA_H-canaliculatus_F_contig11624.1434.1|Name=mRNA_H-canaliculatus_F_contig11624.1434.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=600bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11624:96..687+ (Hapterophycus canaliculatus Oshoro5f female)
CGTGGCAGGCGCAGACGGCGTGTAGCGCCGTCGTTGCTCGAAAAACGGCG
AGAAAAAACGACGCTGTCCTCGTCGTCGTTGTCGTCGTTGTCGTCGTTTT
GGTTGTTTCTAGGGTCGAATTCACGCGGAGATCCTCGACGTCGTCGCCGA
CTGAGCCTCCCCGCCCCACCTCGCAGGGGAAGCTCATCAGGGGATAGGAT
CGAAACGTCCCCGTTTTCAAGTTGTAGAAAGGAATTAGAATCCCCCCGCC
CCTCCCACCATCCCAGTTTTGGAATTAAACCAGTTTGTTTGATCGCATAG
CGTGGCAGGCGCAGACGGCGTGTAGCGCCGTCGTTGCTCGAAAAACGGCG
AGAAAAAACGACGCTGTCCTCGTCGTCGTTGTCGTCGTTGTCGTCGTTTT
GGTTGTTTCTAGGGTCGAATTCACGCGGAGATCCTCGACGTCGTCGCCGA
CTGAGCCTCCCCGCCCCACCTCGCAGGGGAAGCTCATCAGGGGATAGGAT
CGAAACGTCCCCGTTTTCAAGTTGTAGAAAGGAATTAGAATCCCCCCGCC
CCTCCCACCATCCCAGTTTTGGAATTAAACCAGTTTGTTTGATCGCATAG
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