mRNA_H-canaliculatus_F_contig11615.1426.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig11615.1426.1 vs. uniprot
Match: A0A6H5JSV0_9PHAE (TRUD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV0_9PHAE) HSP 1 Score: 124 bits (310), Expect = 1.580e-29 Identity = 64/94 (68.09%), Postives = 75/94 (79.79%), Query Frame = 3 Query: 69 EAKVEVMRVTAEAVRAGVFSIKHVVLPLPGHSVKFPLHSVGEEMLASLKQDGVDDVILEGHPQKQFDLAGAYRHVVVRPAAQNVPPTASPPPAS 350 E + V+RV+AE RAGVF+IKHVVLPLPG+SV FPL++VGEEML SLKQDGVDDVIL GHPQ+ FDL GAYRHV+V P +V P PPA+ Sbjct: 220 EGQGGVVRVSAEVARAGVFTIKHVVLPLPGNSVMFPLNAVGEEMLMSLKQDGVDDVILNGHPQRAFDLEGAYRHVMVHPRDFDVKPE---PPAA 310
BLAST of mRNA_H-canaliculatus_F_contig11615.1426.1 vs. uniprot
Match: D7FYR3_ECTSI (Pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYR3_ECTSI) HSP 1 Score: 124 bits (311), Expect = 3.890e-29 Identity = 69/95 (72.63%), Postives = 75/95 (78.95%), Query Frame = 3 Query: 12 RGAGGDXXXXXXXXXXEEAEAKVEVMRVTAEAVRAGVFSIKHVVLPLPGHSVKFPLHSVGEEMLASLKQDGVDDVILEGHPQKQFDLAGAYRHVV 296 RG GG+ XXXXX EV+RVTAEA RAGVF+IKHVVLPLPG+SV FPL+ VGEEML SLKQDGVDDVIL GHPQK FDL GAYRHV+ Sbjct: 471 RGRGGNRDGREXXXXXXXXXXXEEVVRVTAEAARAGVFTIKHVVLPLPGNSVMFPLNPVGEEMLVSLKQDGVDDVILNGHPQKAFDLEGAYRHVM 565
BLAST of mRNA_H-canaliculatus_F_contig11615.1426.1 vs. uniprot
Match: A0A836CLL9_9STRA (TRUD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLL9_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 3.100e-8 Identity = 38/93 (40.86%), Postives = 48/93 (51.61%), Query Frame = 3 Query: 66 AEAKVEVMRVTAEAVRAGVFSIKHVVLPLPGHSVKFPLHSVGEEMLASLKQDGVDDVILEGHPQKQFDLAGAYRHVVVRP---AAQNVPPTAS 335 A + V V E G F I+HVV + P H VG L L DGV + +L+GHPQ F L GAYRH++V+P AA P TA+ Sbjct: 623 APPSIRVYMVEDEDAEQGRFGIEHVV--------EHPAHVVGTRTLHRLYADGVHETVLDGHPQSDFTLMGAYRHLIVKPEEIAAAATPSTAA 707
BLAST of mRNA_H-canaliculatus_F_contig11615.1426.1 vs. uniprot
Match: A0A7S2N074_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2N074_9EUKA) HSP 1 Score: 58.5 bits (140), Expect = 2.480e-7 Identity = 35/84 (41.67%), Postives = 47/84 (55.95%), Query Frame = 3 Query: 69 EAKVEVMRVTAEAVRAGVFSIKHVVLPLPGHSVKFPLHSVG---EEMLA--SLKQDGVDDVILEGHPQKQFDLAGAYRHVVVRP 305 +A + V VT AG++SI V+LPLPGHSVK P H+V +LA SL D D HP ++ L G+YR V+ +P Sbjct: 64 DASIAVHVVTEAEAAAGIYSIHDVLLPLPGHSVKLPDHTVSAVYSRVLAEWSLTMDSFD------HPSRELKLPGSYRRVLEKP 141
BLAST of mRNA_H-canaliculatus_F_contig11615.1426.1 vs. uniprot
Match: UPI001652067B (pseudouridylate synthase 7 homolog n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI001652067B) HSP 1 Score: 58.9 bits (141), Expect = 1.850e-6 Identity = 29/61 (47.54%), Postives = 42/61 (68.85%), Query Frame = 3 Query: 123 FSIKHVVLPLPGHSVKFPLHSVGEEMLASLKQDGVDDVILEGHPQKQFDLAGAYRHVVVRP 305 +S++ VVLPLPGHS+ +P + V + L++DG+D +E PQK + L GAYRH+VV P Sbjct: 601 YSLRDVVLPLPGHSIVYPDNHVRDWYRLMLQEDGLDIDKME-RPQKDYSLPGAYRHLVVYP 660
BLAST of mRNA_H-canaliculatus_F_contig11615.1426.1 vs. uniprot
Match: A0A225WC41_9STRA (Pseudouridylate synthase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WC41_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 1.110e-5 Identity = 33/79 (41.77%), Postives = 47/79 (59.49%), Query Frame = 3 Query: 81 EVMRVTAEAVRAGVFSIKHVVLPLPGHSVKFPLHSVGEEMLASLKQDGVDDVILEGH----PQKQFDLAGAYRHVVVRP 305 EVM +T V G++SI+ VVLPLPGH+VK+P + +G L DG+D L H + + L G+YR++V RP Sbjct: 543 EVMELTEANV--GLYSIEDVVLPLPGHAVKYPTNEIGAAYRKMLTTDGID---LNAHFGPDGSQTYPLNGSYRNLVKRP 616
BLAST of mRNA_H-canaliculatus_F_contig11615.1426.1 vs. uniprot
Match: UPI001BB176DB (pseudouridylate synthase 7 homolog n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB176DB) HSP 1 Score: 55.5 bits (132), Expect = 1.190e-5 Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 3 Query: 123 FSIKHVVLPLPGHSVKFPLHSVGEEMLASLKQDGVDDVILEGHPQKQFDLAGAYRHVVVRP 305 F+I VVLPLPGH VK+P+H G+ L +DG+ +L+ + + L+GAYR VV+P Sbjct: 177 FTIYDVVLPLPGHGVKYPVHQAGKWFTEELAKDGLTVEMLK-NSNRDLSLSGAYRKCVVKP 236
BLAST of mRNA_H-canaliculatus_F_contig11615.1426.1 vs. uniprot
Match: H3GXX2_PHYRM (TRUD domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GXX2_PHYRM) HSP 1 Score: 56.2 bits (134), Expect = 1.520e-5 Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 3 Query: 81 EVMRVTAEAVRAGVFSIKHVVLPLPGHSVKFPLHSVGEEMLASLKQDGVDDVILEGH----PQKQFDLAGAYRHVVVRP 305 EVM +T + V G +SI+ VVLPLPGH++K+P + +G L DG+D L H + + L G+YRH+V +P Sbjct: 578 EVMALTDDNV--GQYSIEDVVLPLPGHTIKYPTNEIGAAYRKMLTTDGID---LNAHFGPDGSQTYVLDGSYRHLVKKP 651
BLAST of mRNA_H-canaliculatus_F_contig11615.1426.1 vs. uniprot
Match: M4BIJ7_HYAAE (TRUD domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BIJ7_HYAAE) HSP 1 Score: 55.8 bits (133), Expect = 2.030e-5 Identity = 33/87 (37.93%), Postives = 48/87 (55.17%), Query Frame = 3 Query: 63 EAEAKVEVMRVTAEAVRAGV--FSIKHVVLPLPGHSVKFPLHSVGEEMLASLKQDGVDDVILEGH----PQKQFDLAGAYRHVVVRP 305 E AK + ++ T E V +SI+ VVLPLPGH++K+P + +G L DG+D L H + + L G+YRHVV +P Sbjct: 545 EKSAKRQPIQETVELTEDNVDQYSIEDVVLPLPGHAIKYPTNEIGTAYRKMLTTDGID---LNAHFGPDGSQAYILDGSYRHVVKKP 628
BLAST of mRNA_H-canaliculatus_F_contig11615.1426.1 vs. uniprot
Match: A0A7M7MZ56_STRPU (TRUD domain-containing protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7MZ56_STRPU) HSP 1 Score: 54.7 bits (130), Expect = 2.270e-5 Identity = 29/66 (43.94%), Postives = 38/66 (57.58%), Query Frame = 3 Query: 108 VRAGVFSIKHVVLPLPGHSVKFPLHSVGEEMLASLKQDGVDDVILEGHPQKQFDLAGAYRHVVVRP 305 V FSI VVLPLPGH VK+P H GE L +D + +L+ + + L+GAYR VV+P Sbjct: 176 VNQNEFSIYDVVLPLPGHGVKYPTHKAGEWYTEELAKDDLTVEMLK-NTNRDLSLSGAYRKCVVKP 240 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11615.1426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig11615.1426.1 >prot_H-canaliculatus_F_contig11615.1426.1 ID=prot_H-canaliculatus_F_contig11615.1426.1|Name=mRNA_H-canaliculatus_F_contig11615.1426.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=89bp MRVTAEAVRAGVFSIKHVVLPLPGHSVKFPLHSVGEEMLASLKQDGVDDVback to top mRNA from alignment at H-canaliculatus_F_contig11615:2288..3451+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig11615.1426.1 ID=mRNA_H-canaliculatus_F_contig11615.1426.1|Name=mRNA_H-canaliculatus_F_contig11615.1426.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1164bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11615:2288..3451+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11615:2288..3451+ >mRNA_H-canaliculatus_F_contig11615.1426.1 ID=mRNA_H-canaliculatus_F_contig11615.1426.1|Name=mRNA_H-canaliculatus_F_contig11615.1426.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=534bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11615:2288..3451+ (Hapterophycus canaliculatus Oshoro5f female)back to top |