mRNA_H-canaliculatus_F_contig11595.1405.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11595.1405.1
Unique NamemRNA_H-canaliculatus_F_contig11595.1405.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11595.1405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11595contigH-canaliculatus_F_contig11595:3146..4128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size985
Cds size561
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928850.6652699-UTR-H-canaliculatus_F_contig11595:3145..35671622928850.6652699-UTR-H-canaliculatus_F_contig11595:3145..3567Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11595 3146..3567 +
1696845588.444905-UTR-H-canaliculatus_F_contig11595:3145..35671696845588.444905-UTR-H-canaliculatus_F_contig11595:3145..3567Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11595 3146..3567 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928850.6983874-CDS-H-canaliculatus_F_contig11595:3567..41281622928850.6983874-CDS-H-canaliculatus_F_contig11595:3567..4128Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11595 3568..4128 +
1696845588.4547405-CDS-H-canaliculatus_F_contig11595:3567..41281696845588.4547405-CDS-H-canaliculatus_F_contig11595:3567..4128Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11595 3568..4128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11595.1405.1prot_H-canaliculatus_F_contig11595.1405.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11595 3568..4128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11595.1405.1

>prot_H-canaliculatus_F_contig11595.1405.1 ID=prot_H-canaliculatus_F_contig11595.1405.1|Name=mRNA_H-canaliculatus_F_contig11595.1405.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=187bp
MPGEFLGEIVTDTKGIPSSGTKYSGSGGLCRIPHNNNSFVWSCVNNRCFY
KISHQHRRNTHLRLCPSQGAFVNSIQRGFHSSDRMQLCITRKVVDKNDVF
VPNRRRQPKPLERVRLPSFRCLTFNRPRNRETRVASLHTCSEPILAPTLK
RSRASRVSHQPFFRKRFRVTPGKRPTHDVETETAFFF
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mRNA from alignment at H-canaliculatus_F_contig11595:3146..4128+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11595.1405.1 ID=mRNA_H-canaliculatus_F_contig11595.1405.1|Name=mRNA_H-canaliculatus_F_contig11595.1405.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=983bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11595:3146..4128+ (Hapterophycus canaliculatus Oshoro5f female)
AAAAAATAAAATAATTTTCGTGCTTCGTTCTCAGAAAGGGAGCGCAAGCG
CATGCAAAGTTGGGGCACCGCCTGTTGCTGTGTTTGTGCCTGTGCAAGCC
CTATCGGACCTAGTTCCTGTTTGAGGGCGCCGGCCCACACCTGCTTCTTT
TTCAGGCTCACTAGGCTCACCGGGCCTTGTCGTGCCTCGCTGACCCCTGT
CTTAAGTTTGACTGGCACTTTCTCCGTATTCCTACACCTACAGGCTCGCG
TTCAGCGACTGGAGATAAGATAGTGGAAGAACCGATTCAACGCGACACGA
CAGATGCAGACACACACGCAACGAAGCAAGACACGTTACGGACGCCTACG
GCCGCCCGATTGGACAACCTACCAACGAATTTCTTTATTTAACGATCACA
GTTAGGCCTCTCCTCCGAGCGTATGCCAGGTGAATTTTTAGGGGAAATAG
TCACTGACACAAAAGGGATACCCTCCTCTGGCACGAAGTATAGCGGCTCA
GGGGGATTGTGCAGAATTCCTCACAACAATAACAGTTTCGTGTGGAGTTG
TGTAAATAACCGATGTTTTTACAAAATTAGTCACCAGCACCGAAGGAATA
CCCACCTGAGACTCTGTCCATCTCAAGGGGCTTTTGTTAATTCCATTCAG
CGAGGGTTCCATTCGAGTGACAGGATGCAATTATGTATCACCAGGAAAGT
TGTGGACAAAAACGATGTTTTTGTTCCAAATAGACGCCGTCAACCCAAAC
CTCTTGAAAGGGTCCGGCTTCCCTCCTTCCGCTGTTTGACTTTTAACCGA
CCACGAAACAGAGAGACGCGTGTCGCCTCTCTGCACACATGCTCCGAACC
GATCCTTGCTCCCACACTCAAACGCTCGAGGGCTTCAAGAGTATCACACC
AACCGTTCTTCCGGAAACGTTTCAGAGTCACTCCAGGAAAACGCCCAACG
CATGACGTCGAAACGGAAACCGCTTTTTTTTTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11595:3146..4128+

>mRNA_H-canaliculatus_F_contig11595.1405.1 ID=mRNA_H-canaliculatus_F_contig11595.1405.1|Name=mRNA_H-canaliculatus_F_contig11595.1405.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1122bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11595:3146..4128+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCAGGTGAATTTTTAGGGGAAATAGTCACTGACACAAAAGGGATACC
CTCCTCTGGCACGAAGTATAGCGGCTCAGGGGGATTGTGCAGAATTCCTC
ACAACAATAACAGTTTCGTGTGGAGTTGTGTAAATAACCGATGTTTTTAC
AAAATTAGTCACCAGCACCGAAGGAATACCCACCTGAGACTCTGTCCATC
TCAAGGGGCTTTTGTTAATTCCATTCAGCGAGGGTTCCATTCGAGTGACA
GGATGCAATTATGTATCACCAGGAAAGTTGTGGACAAAAACGATGTTTTT
GTTCCAAATAGACGCCGTCAACCCAAACCTCTTGAAAGGGTCCGGCTTCC
CTCCTTCCGCTGTTTGACTTTTAACCGACCACGAAACAGAGAGACGCGTG
TCGCCTCTCTGCACACATGCTCCGAACCGATCCTTGCTCCCACACTCAAA
CGCTCGAGGGCTTCAAGAGTATCACACCAACCGTTCTTCCGGAAACGTTT
CAGAGTCACTCCAGGAAAACGCCCAACGCATGACGTCGAAACGGAAACCG
CTTTTTTTTTTATGCCAGGTGAATTTTTAGGGGAAATAGTCACTGACACA
AAAGGGATACCCTCCTCTGGCACGAAGTATAGCGGCTCAGGGGGATTGTG
CAGAATTCCTCACAACAATAACAGTTTCGTGTGGAGTTGTGTAAATAACC
GATGTTTTTACAAAATTAGTCACCAGCACCGAAGGAATACCCACCTGAGA
CTCTGTCCATCTCAAGGGGCTTTTGTTAATTCCATTCAGCGAGGGTTCCA
TTCGAGTGACAGGATGCAATTATGTATCACCAGGAAAGTTGTGGACAAAA
ACGATGTTTTTGTTCCAAATAGACGCCGTCAACCCAAACCTCTTGAAAGG
GTCCGGCTTCCCTCCTTCCGCTGTTTGACTTTTAACCGACCACGAAACAG
AGAGACGCGTGTCGCCTCTCTGCACACATGCTCCGAACCGATCCTTGCTC
CCACACTCAAACGCTCGAGGGCTTCAAGAGTATCACACCAACCGTTCTTC
CGGAAACGTTTCAGAGTCACTCCAGGAAAACGCCCAACGCATGACGTCGA
AACGGAAACCGCTTTTTTTTTT
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