mRNA_H-canaliculatus_F_contig11582.1396.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11582.1396.1
Unique NamemRNA_H-canaliculatus_F_contig11582.1396.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11582.1396.1 vs. uniprot
Match: A0A6H5KPX0_9PHAE (Mon2_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX0_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 2.010e-44
Identity = 93/139 (66.91%), Postives = 102/139 (73.38%), Query Frame = 1 
Query:    1 MAWGAMVEASRFGVDESGDIAPAFVGGLAAVYKAGVEDGAELSSGQEGEEERMVQLFEMLDGLFPPRVPPVIXXXXXXXXXXXXXXXSGSRGPGS---RRPVYVPKVTPGQRAILDFLQEDLRSGWRLAVRLLAKYSVV 408
            MAW AM+EASRF  D  GD+A AFV GLAAVYKAGVE+GAEL  GQEGE+ERM QLFE LDGLFPPRV P                 SG   P +   RR VY+PKVTPGQRAIL+FLQ+DLR+GWRLAVRLLAKYSVV
Sbjct:  702 MAWAAMLEASRFETDSDGDVAAAFVQGLAAVYKAGVEEGAELCPGQEGEDERMRQLFETLDGLFPPRVAPAAG--------------SGGCAPQATDPRRAVYMPKVTPGQRAILEFLQDDLRTGWRLAVRLLAKYSVV 826
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BLAST of mRNA_H-canaliculatus_F_contig11582.1396.1 vs. uniprot
Match: D8LQH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH8_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 4.220e-33
Identity = 75/112 (66.96%), Postives = 80/112 (71.43%), Query Frame = 1 
Query:   73 VGGLAAVYKAGVEDGAELSSGQEGEEERMVQLFEMLDGLFPPRVPPVIXXXXXXXXXXXXXXXSGSRGPGSRRPVYVPKVTPGQRAILDFLQEDLRSGWRLAVRLLAKYSVV 408
            V GLAAVYKAGVE+GAEL  GQEGEEERM QLFE LDGLF PRV P                    +    RR VY+PKVTPGQRAIL+FLQEDLR+GWRLAVRLLAKYSVV
Sbjct: 1564 VQGLAAVYKAGVEEGAELCPGQEGEEERMRQLFETLDGLFAPRVAPA-----------SGGGGGAPQATDPRRAVYMPKVTPGQRAILEFLQEDLRTGWRLAVRLLAKYSVV 1664
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11582.1396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPX0_9PHAE2.010e-4466.91Mon2_C domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LQH8_ECTSI4.220e-3366.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11582contigH-canaliculatus_F_contig11582:524..1283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.1
Seed ortholog evalue6.1e-30
Seed eggNOG ortholog2880.D8LQH8
KEGG koko:K18466
KEGG Pathwayko04144,map04144
EggNOG free text desc.protein transport
EggNOG OGsKOG1848@1,KOG1848@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size416
Cds size414
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928849.410062-CDS-H-canaliculatus_F_contig11582:523..8321622928849.410062-CDS-H-canaliculatus_F_contig11582:523..832Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11582 524..832 +
1696845587.9250698-CDS-H-canaliculatus_F_contig11582:523..8321696845587.9250698-CDS-H-canaliculatus_F_contig11582:523..832Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11582 524..832 +
1622928849.4237814-CDS-H-canaliculatus_F_contig11582:1178..12831622928849.4237814-CDS-H-canaliculatus_F_contig11582:1178..1283Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11582 1179..1283 +
1696845587.9355965-CDS-H-canaliculatus_F_contig11582:1178..12831696845587.9355965-CDS-H-canaliculatus_F_contig11582:1178..1283Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11582 1179..1283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11582.1396.1prot_H-canaliculatus_F_contig11582.1396.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11582 524..1283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11582.1396.1

>prot_H-canaliculatus_F_contig11582.1396.1 ID=prot_H-canaliculatus_F_contig11582.1396.1|Name=mRNA_H-canaliculatus_F_contig11582.1396.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=138bp
MAWGAMVEASRFGVDESGDIAPAFVGGLAAVYKAGVEDGAELSSGQEGEE
ERMVQLFEMLDGLFPPRVPPVIPPGGAGGGGGGGASSSGSRGPGSRRPVY
VPKVTPGQRAILDFLQEDLRSGWRLAVRLLAKYSVVGE
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mRNA from alignment at H-canaliculatus_F_contig11582:524..1283+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11582.1396.1 ID=mRNA_H-canaliculatus_F_contig11582.1396.1|Name=mRNA_H-canaliculatus_F_contig11582.1396.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=760bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11582:524..1283+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGTGGGGGGCGATGGTGGAGGCGTCCAGGTTCGGGGTGGACGAGAG
CGGCGACATCGCTCCGGCGTTCGTGGGGGGCCTCGCGGCTGTGTACAAGG
CCGGGGTGGAGGACGGGGCGGAGCTGTCGTCCGGGCAGGAGGGGGAGGAG
GAGAGGATGGTGCAGCTGTTCGAGATGCTGGACGGGCTGTTCCCGCCGCG
CGTGCCCCCAGTCATCCCCCCGGGGGGCGCTGGTGGTGGGGGTGGCGGCG
GGGCCTCCTCCTCCGGTTCTCGAGGCCCCGGCTCCCGCCGCCCGGTGTAT
GTGCCCAAGGTACGTGGGGTGTGCTTGCAGTATCTCTTGCAGGCGTCTTG
CAAAGTTGAGACTTGCTACGTATGTTCTTCGAGCACTGTGGTGCCTCTCC
CTTTTCTCTCGATAATTGATAAGCGCACCATAGTTGTGCGGGCATCCGAT
TGCCGCATGCTGCACGCCCCCTCACGGAGCAAGCTTGCGCCCCCCCCATG
CCCCTAGTGCCCAAAAAAACCTGAGTGAGAAACGCACGCTGCGCACTGAA
TTTTTAACCCCGCTTGTTGAGCCCTTGCCGACTGTGCCCATCAAGCTGGG
ATGAGAGATCGCCTCCTTCTCGTCTCCCCCGCCTTGTTCTCTTGGCTGTC
CGCAGGTCACCCCGGGGCAACGCGCTATCCTAGACTTCTTGCAAGAGGAC
CTGCGCTCCGGGTGGCGGCTGGCCGTGAGGCTGCTCGCTAAGTACAGCGT
CGTGGGAGAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11582:524..1283+

>mRNA_H-canaliculatus_F_contig11582.1396.1 ID=mRNA_H-canaliculatus_F_contig11582.1396.1|Name=mRNA_H-canaliculatus_F_contig11582.1396.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=828bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11582:524..1283+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGTGGGGGGCGATGGTGGAGGCGTCCAGGTTCGGGGTGGACGAGAG
CGGCGACATCGCTCCGGCGTTCGTGGGGGGCCTCGCGGCTGTGTACAAGG
CCGGGGTGGAGGACGGGGCGGAGCTGTCGTCCGGGCAGGAGGGGGAGGAG
GAGAGGATGGTGCAGCTGTTCGAGATGCTGGACGGGCTGTTCCCGCCGCG
CGTGCCCCCAGTCATCCCCCCGGGGGGCGCTGGTGGTGGGGGTGGCGGCG
GGGCCTCCTCCTCCGGTTCTCGAGGCCCCGGCTCCCGCCGCCCGGTGTAT
GTGCCCAAGATGGCGTGGGGGGCGATGGTGGAGGCGTCCAGGTTCGGGGT
GGACGAGAGCGGCGACATCGCTCCGGCGTTCGTGGGGGGCCTCGCGGCTG
TGTACAAGGCCGGGGTGGAGGACGGGGCGGAGCTGTCGTCCGGGCAGGAG
GGGGAGGAGGAGAGGATGGTGCAGCTGTTCGAGATGCTGGACGGGCTGTT
CCCGCCGCGCGTGCCCCCAGTCATCCCCCCGGGGGGCGCTGGTGGTGGGG
GTGGCGGCGGGGCCTCCTCCTCCGGTTCTCGAGGCCCCGGCTCCCGCCGC
CCGGTGTATGTGCCCAAGGTCACCCCGGGGCAACGCGCTATCCTAGACTT
CTTGCAAGAGGACCTGCGCTCCGGGTGGCGGCTGGCCGTGAGGCTGCTCG
CTAAGTACAGCGTCGTGGGAGAAGTCACCCCGGGGCAACGCGCTATCCTA
GACTTCTTGCAAGAGGACCTGCGCTCCGGGTGGCGGCTGGCCGTGAGGCT
GCTCGCTAAGTACAGCGTCGTGGGAGAA
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