mRNA_H-canaliculatus_F_contig1158.1393.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1158.1393.1
Unique NamemRNA_H-canaliculatus_F_contig1158.1393.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1158.1393.1 vs. uniprot
Match: D8LSR0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSR0_ECTSI)

HSP 1 Score: 393 bits (1009), Expect = 3.540e-130
Identity = 190/212 (89.62%), Postives = 203/212 (95.75%), Query Frame = 1 
Query:    1 LIPEAQIMQDVKDSLSFVSLDLDADLRAARLVRPGNPIVREYVLPDRKNVLKGYAREVDWDARVKRRQQEDLGVEDEQQPQVLTMGNERFQIPEVLFNPSDVGLRQMGLSEAVATCIERCPAELRPQFYANVLLTGGNCAIPNLKERLYSDLRASAPIHCEVNVILPEEPMYHAWRGGSMFGASPEFGSFAVSKQEYDEFGHTICKIRYADW 636
            ++ E ++MQDVKDSLS+VSLDLDADLRAAR VRPGNPIVRE+VLPDRK V+KG+AREVDWDARVKRRQQE+LGVEDEQQPQVLTMGNERF IPEVLFNPS++GLRQMGLSEAVATCIERCPA LRPQFYANVLLTGGNCAIPNL+ERLY DLRASAPIHCEVNVILPEEPM HAWRGGS+FGASPEFGSFAVSKQEYDEFGH ICKIRYADW
Sbjct:  335 MMDEFEVMQDVKDSLSYVSLDLDADLRAARNVRPGNPIVREFVLPDRKTVMKGFAREVDWDARVKRRQQEELGVEDEQQPQVLTMGNERFHIPEVLFNPSNIGLRQMGLSEAVATCIERCPAALRPQFYANVLLTGGNCAIPNLRERLYRDLRASAPIHCEVNVILPEEPMLHAWRGGSLFGASPEFGSFAVSKQEYDEFGHHICKIRYADW 546
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1158.1393.1 vs. uniprot
Match: A0A4P6D8B9_RHOPR (Putative arp6 actin-related protein panstrongylus megistus (Fragment) n=1 Tax=Rhodnius prolixus TaxID=13249 RepID=A0A4P6D8B9_RHOPR)

HSP 1 Score: 185 bits (469), Expect = 3.580e-52
Identity = 90/209 (43.06%), Postives = 129/209 (61.72%), Query Frame = 1 
Query:    1 LIPEAQIMQDVKDSLSFVSLDLDADLRAARLVRPGNPIVREYVLPDRKNVLKGYAREVDWDARVKRRQQEDLGVEDEQQPQVLTMGNERFQIPEVLFNPSDVGLRQMGLSEAVATCIERCPAELRPQFYANVLLTGGNCAIPNLKERLYSDLRASAPIHCEVNVILPEEPMYHAWRGGSMFGASPEFGSFAVSKQEYDEFGHTICKIRY 627
            ++ E  +M  VK+   FVS+D+ AD+   +   P N IVR+Y+LPD  N+ +GY    D    V++              Q L M NERF +PEV+F+PSD+G+ QMGLSEAV   I++CP + R + Y N+++TGG+   P  KERLY D+RA AP   +VN+ LPE P+ +AW+GG +    PEF +F V+K+EY+E G  IC  R+
Sbjct:  116 VMEETYVMNQVKEDTCFVSMDVMADMAKCKKKYPENDIVRDYILPDFTNLRRGYVHTFDKPPVVEQ--------------QKLRMNNERFSVPEVIFHPSDIGINQMGLSEAVRLSIQQCPEDARSELYKNIVVTGGSALFPGFKERLYKDVRADAPDEFDVNITLPENPVTYAWKGGKLISKDPEFYTFVVTKEEYEEEGPNICMERF 310
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1158.1393.1 vs. uniprot
Match: T1I7M9_RHOPR (Uncharacterized protein n=6 Tax=Triatominae TaxID=70999 RepID=T1I7M9_RHOPR)

HSP 1 Score: 185 bits (469), Expect = 2.970e-51
Identity = 90/209 (43.06%), Postives = 129/209 (61.72%), Query Frame = 1 
Query:    1 LIPEAQIMQDVKDSLSFVSLDLDADLRAARLVRPGNPIVREYVLPDRKNVLKGYAREVDWDARVKRRQQEDLGVEDEQQPQVLTMGNERFQIPEVLFNPSDVGLRQMGLSEAVATCIERCPAELRPQFYANVLLTGGNCAIPNLKERLYSDLRASAPIHCEVNVILPEEPMYHAWRGGSMFGASPEFGSFAVSKQEYDEFGHTICKIRY 627
            ++ E  +M  VK+   FVS+D+ AD+   +   P N IVR+Y+LPD  N+ +GY    D    V++              Q L M NERF +PEV+F+PSD+G+ QMGLSEAV   I++CP + R + Y N+++TGG+   P  KERLY D+RA AP   +VN+ LPE P+ +AW+GG +    PEF +F V+K+EY+E G  IC  R+
Sbjct:  198 VMEETYVMNQVKEDTCFVSMDVMADMAKCKKKYPENDIVRDYILPDFTNLRRGYVHTFDKPPVVEQ--------------QKLRMNNERFSVPEVIFHPSDIGINQMGLSEAVKLSIQQCPEDARSELYKNIVVTGGSALFPGFKERLYKDVRADAPDEFDVNITLPENPVTYAWKGGKLISKDPEFYTFVVTKEEYEEEGPNICMERF 392
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1158.1393.1 vs. uniprot
Match: UPI00143D178E (actin-related protein 6 isoform X1 n=2 Tax=Belonocnema kinseyi TaxID=2817044 RepID=UPI00143D178E)

HSP 1 Score: 181 bits (459), Expect = 8.160e-50
Identity = 89/209 (42.58%), Postives = 128/209 (61.24%), Query Frame = 1 
Query:    1 LIPEAQIMQDVKDSLSFVSLDLDADLRAARLVRPGNPIVREYVLPDRKNVLKGYAREVDWDARVKRRQQEDLGVEDEQQPQVLTMGNERFQIPEVLFNPSDVGLRQMGLSEAVATCIERCPAELRPQFYANVLLTGGNCAIPNLKERLYSDLRASAPIHCEVNVILPEEPMYHAWRGGSMFGASPEFGSFAVSKQEYDEFGHTICKIRY 627
            ++ E  ++  VK+   FVS D   D+  A+L    NPIV++YVLPD  ++ +G+               +D GVE EQQ   L + NERF IPE+LF+PSDVG+RQMG+ EA+  C++ C  E  P   +N++LTGG+   P  ++R++ D+R+ API   VNV+L E P+ + W GG +    P F SF VSK+EY+E GHTIC  R+
Sbjct:  197 VMDETYVINQVKEDSCFVSQDFYEDMETAKLKGSSNPIVKDYVLPDFTSLRRGFL--------------QDPGVESEQQ--TLRLNNERFSIPEILFHPSDVGIRQMGIPEAIIDCLKACEEETWPHLLSNIILTGGSTKFPGFRDRIFKDVRSLAPIEFPVNVVLAENPITYPWEGGKLLSKDPTFSSFLVSKEEYEEEGHTICFERF 389
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1158.1393.1 vs. uniprot
Match: A0A8D8ZQ06_9HEMI (Actin-related protein 6 n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8ZQ06_9HEMI)

HSP 1 Score: 172 bits (437), Expect = 7.130e-49
Identity = 91/207 (43.96%), Postives = 121/207 (58.45%), Query Frame = 1 
Query:   10 EAQIMQDVKDSLSFVSLDLDADLRAARLV-RPGNPIVREYVLPDRKNVLKGYAREVDWDARVKRRQQEDLGVEDEQQPQVLTMGNERFQIPEVLFNPSDVGLRQMGLSEAVATCIERCPAELRPQFYANVLLTGGNCAIPNLKERLYSDLRASAPIHCEVNVILPEEPMYHAWRGGSMFGASPEFGSFAVSKQEYDEFGHTICKIRY 627
            E  ++  VK+   +VS D + D+  AR      N IVREYVLPD   + +GY R+               G E   Q Q L + NERF IPEVLF+P+D+G+ QMGLSE +   I  CP   RP  Y N+LLTGG C  P ++ER+ SD+RA AP   EVNV+LP  P+ +AW GG +    PEF S+ V+K+EY+E G  +C  R+
Sbjct:    3 ETHVINQVKEDACYVSQDFNKDMEIARRRDNEDNSIVREYVLPDYTTLKRGYVRKP--------------GSEKNDQFQTLRLTNERFAIPEVLFHPADIGIDQMGLSETIDHVISLCPEHTRPHLYENILLTGGCCGFPGMRERVASDVRALAPDEMEVNVVLPPNPITYAWEGGKLNSQDPEFYSYVVTKEEYEEEGLALCYERF 195
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1158.1393.1 vs. uniprot
Match: A0A1B6G3R9_9HEMI (Uncharacterized protein n=5 Tax=Cicadellinae TaxID=33370 RepID=A0A1B6G3R9_9HEMI)

HSP 1 Score: 178 bits (451), Expect = 1.370e-48
Identity = 87/209 (41.63%), Postives = 126/209 (60.29%), Query Frame = 1 
Query:    1 LIPEAQIMQDVKDSLSFVSLDLDADLRAARLVRPGNPIVREYVLPDRKNVLKGYAREVDWDARVKRRQQEDLGVEDEQQPQVLTMGNERFQIPEVLFNPSDVGLRQMGLSEAVATCIERCPAELRPQFYANVLLTGGNCAIPNLKERLYSDLRASAPIHCEVNVILPEEPMYHAWRGGSMFGASPEFGSFAVSKQEYDEFGHTICKIRY 627
            ++ E  +M  VK+   +V+ D   ++  AR   P N I R+YVLPD  ++ +GY RE++    V++              Q L + NERF IPE+LF+PSDVG+ QMG+ EAV   +  CP E  P  Y+NVL+ GG    P  ++RLY DLR++ P   +VNV LPE P+ +AW+GG++    PEF SF V+K+E++E GH IC  R+
Sbjct:  200 VMDETHVMNQVKEDACYVAQDFMKEMEVARQKYPENTIARDYVLPDYTSIRRGYLRELNQTEPVEQ--------------QTLRLNNERFAIPELLFHPSDVGISQMGIVEAVVDAVNACPPETHPHLYSNVLVVGGCACFPGFRDRLYKDLRSATPQEFDVNVYLPENPVTYAWQGGALLSRDPEFYSFVVTKEEFEEEGHNICFERF 394
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1158.1393.1 vs. uniprot
Match: A0A444SZM0_ARMVU (Actin-related protein 6 n=1 Tax=Armadillidium vulgare TaxID=13347 RepID=A0A444SZM0_ARMVU)

HSP 1 Score: 176 bits (446), Expect = 1.620e-48
Identity = 86/209 (41.15%), Postives = 128/209 (61.24%), Query Frame = 1 
Query:    1 LIPEAQIMQDVKDSLSFVSLDLDADLRAARLVRPGNPIVREYVLPDRKNVLKGYAREVDWDARVKRRQQEDLGVEDEQQPQVLTMGNERFQIPEVLFNPSDVGLRQMGLSEAVATCIERCPAELRPQFYANVLLTGGNCAIPNLKERLYSDLRASAPIHCEVNVILPEEPMYHAWRGGSMFGASPEFGSFAVSKQEYDEFGHTICKIRY 627
            ++ E  ++  VK+   FVSLD  AD++  R     N I+R+YVLPD   + +GY R            +E+   +     Q++ + NERF IPE+LFNPSDVG+++MG+SEA+  CIE+CP E RP  Y N+LLTGGNC IP  ++R+Y D+R+ A     VNV L + P  +AW GG+    S +F    V++QE++E G+ IC+ ++
Sbjct:  135 VMDETYVINQVKEDSCFVSLDFMADMKITREKNEDNTILRDYVLPDFTTIKRGYVRS-----------REESNGKAPNGEQLIRLNNERFSIPELLFNPSDVGIQEMGISEAIVYCIEKCPEETRPHLYKNILLTGGNCNIPGFRDRVYKDVRSMAHSDYTVNVTLAKNPSTYAWNGGAALSRSSQFPEMLVTRQEWEENGYYICEKKF 332
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1158.1393.1 vs. uniprot
Match: UPI0006D4CE4D (actin-related protein 6 n=1 Tax=Halyomorpha halys TaxID=286706 RepID=UPI0006D4CE4D)

HSP 1 Score: 177 bits (450), Expect = 1.830e-48
Identity = 90/209 (43.06%), Postives = 127/209 (60.77%), Query Frame = 1 
Query:    1 LIPEAQIMQDVKDSLSFVSLDLDADLRAARLVRPGNPIVREYVLPDRKNVLKGYAREVDWDARVKRRQQEDLGVEDEQQPQVLTMGNERFQIPEVLFNPSDVGLRQMGLSEAVATCIERCPAELRPQFYANVLLTGGNCAIPNLKERLYSDLRASAPIHCEVNVILPEEPMYHAWRGGSMFGASPEFGSFAVSKQEYDEFGHTICKIRY 627
            ++ E  +M  VK+   FVS+D  AD+  AR   P N IVR+Y+LPD  N+ +GYA+ +D              V ++Q+   L + NERF +PE+LF PSD+G+ +MG++EAV   ++ CP E R   Y N++LTGG    P  KERLY D+RASAP   EV++ LP  P+ +AW GG +    PEF SF V+K+EY+E G  I   R+
Sbjct:  198 VMEETYVMNQVKEDTCFVSVDYMADMATARKKYPDNDIVRDYILPDFTNLRRGYAQTLD-----------QAPVTEQQK---LRLNNERFAVPELLFTPSDIGINEMGVAEAVIDSVQACPEEARSHLYKNIILTGGCALFPGFKERLYKDVRASAPDEYEVHITLPPNPITYAWHGGKLISKDPEFYSFVVTKEEYEEEGSPILMERF 392
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1158.1393.1 vs. uniprot
Match: A0A4W3GQA9_CALMI (Uncharacterized protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3GQA9_CALMI)

HSP 1 Score: 172 bits (435), Expect = 2.450e-48
Identity = 74/209 (35.41%), Postives = 131/209 (62.68%), Query Frame = 1 
Query:    1 LIPEAQIMQDVKDSLSFVSLDLDADLRAARLVRPGNPIVREYVLPDRKNVLKGYAREVDWDARVKRRQQEDLGVEDEQQPQVLTMGNERFQIPEVLFNPSDVGLRQMGLSEAVATCIERCPAELRPQFYANVLLTGGNCAIPNLKERLYSDLRASAPIHCEVNVILPEEPMYHAWRGGSMFGASPEFGSFAVSKQEYDEFGHTICKIRY 627
            ++ E  ++  VK+ + +VS D   D+  A+L    N ++R+Y+LPD   + KG+          K R++     + +   Q+L + NERF +PE+LF+PSD+G+++MG+ EA+   ++  P E+ P FY N++LTGGN  +P  ++R+Y+D+R+  P  C+V+V+LPE P+ H+W GG +   S +F    V++ +Y+E GH+IC+ ++
Sbjct:   14 VMDETHVINQVKEDVCYVSQDFYKDMEIAQLKGEANTVMRDYILPDFSTIKKGFC---------KPREEMVFSGKYKTSEQILRLTNERFAVPEILFHPSDIGIQEMGIPEAIVHSVQNLPEEMHPHFYNNIILTGGNTLLPGFRDRVYADVRSLTPCECDVSVLLPENPVTHSWEGGKLLSESSDFMDMVVTRDDYEENGHSICEEKF 213
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1158.1393.1 vs. uniprot
Match: A0A8B8A4Z5_ACAPL (actin-related protein 6-like n=2 Tax=Valvatida TaxID=41166 RepID=A0A8B8A4Z5_ACAPL)

HSP 1 Score: 175 bits (443), Expect = 1.900e-47
Identity = 83/205 (40.49%), Postives = 125/205 (60.98%), Query Frame = 1 
Query:    1 LIPEAQIMQDVKDSLSFVSLDLDADLRAARLVRPGNPIVREYVLPDRKNVLKGYAREVDWDARVKRRQQEDLGVEDEQQPQVLTMGNERFQIPEVLFNPSDVGLRQMGLSEAVATCIERCPAELRPQFYANVLLTGGNCAIPNLKERLYSDLRASAPIHCEVNVILPEEPMYHAWRGGSMFGASPEFGSFAVSKQEYDEFGHTIC 615
            ++ E  +M  VK+ + +VSLD   D++ A+L    N +VR+Y+LPD  +  +GY +            QED  ++  +Q   + M NERF +PE+LF+PSD+G+++MG+SEA+   I  CP ++RP  + N+LLTGGN   P  KER+ SD+R+ AP   +V V  P+ P+ HAW GG +   S  F S  V++ EY E GH+IC
Sbjct:  197 VMDETYVMNQVKEDVCYVSLDFYGDMKIAKLKSKENTVVRDYILPDFSHSKRGYLK------------QEDTKLKPHEQ--TVRMNNERFAVPEILFHPSDIGIQEMGVSEAIVHVINNCPTDMRPHLFKNILLTGGNAMFPGFKERVESDVRSMAPALYDVRVTKPDNPITHAWEGGKLLSTSKNFSSLMVTRDEYSEHGHSIC 387
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1158.1393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSR0_ECTSI3.540e-13089.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4P6D8B9_RHOPR3.580e-5243.06Putative arp6 actin-related protein panstrongylus ... [more]
T1I7M9_RHOPR2.970e-5143.06Uncharacterized protein n=6 Tax=Triatominae TaxID=... [more]
UPI00143D178E8.160e-5042.58actin-related protein 6 isoform X1 n=2 Tax=Belonoc... [more]
A0A8D8ZQ06_9HEMI7.130e-4943.96Actin-related protein 6 n=1 Tax=Cacopsylla melanon... [more]
A0A1B6G3R9_9HEMI1.370e-4841.63Uncharacterized protein n=5 Tax=Cicadellinae TaxID... [more]
A0A444SZM0_ARMVU1.620e-4841.15Actin-related protein 6 n=1 Tax=Armadillidium vulg... [more]
UPI0006D4CE4D1.830e-4843.06actin-related protein 6 n=1 Tax=Halyomorpha halys ... [more]
A0A4W3GQA9_CALMI2.450e-4835.41Uncharacterized protein n=1 Tax=Callorhinchus mili... [more]
A0A8B8A4Z5_ACAPL1.900e-4740.49actin-related protein 6-like n=2 Tax=Valvatida Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1158contigH-canaliculatus_F_contig1158:150..3457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score392.1
Seed ortholog evalue1.6e-106
Seed eggNOG ortholog2880.D8LSR0
Preferred nameACTR6
KEGG koko:K11662
GOsGO:0000228,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000812,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006325,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006996,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031491,GO:0031974,GO:0031981,GO:0032991,GO:0034399,GO:0034728,GO:0040029,GO:0043044,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045814,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0070603,GO:0070828,GO:0071824,GO:0071840,GO:0080090,GO:0097346,GO:0098687,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1904949,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.chromatin remodeling
EggNOG OGsKOG0680@1,KOG0680@2759
Ec32 ortholog descriptionActin-related protein
Ec32 orthologEc-15_002940.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons5
Model size1126
Cds size618
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928848.7998376-UTR-H-canaliculatus_F_contig1158:149..1701622928848.7998376-UTR-H-canaliculatus_F_contig1158:149..170Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1158 150..170 +
1696845587.6400027-UTR-H-canaliculatus_F_contig1158:149..1701696845587.6400027-UTR-H-canaliculatus_F_contig1158:149..170Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1158 150..170 +
1622928848.8998568-UTR-H-canaliculatus_F_contig1158:2970..34571622928848.8998568-UTR-H-canaliculatus_F_contig1158:2970..3457Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1158 2971..3457 +
1696845587.7076259-UTR-H-canaliculatus_F_contig1158:2970..34571696845587.7076259-UTR-H-canaliculatus_F_contig1158:2970..3457Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1158 2971..3457 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928848.8155878-CDS-H-canaliculatus_F_contig1158:170..2681622928848.8155878-CDS-H-canaliculatus_F_contig1158:170..268Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1158 171..268 +
1696845587.654839-CDS-H-canaliculatus_F_contig1158:170..2681696845587.654839-CDS-H-canaliculatus_F_contig1158:170..268Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1158 171..268 +
1622928848.8272624-CDS-H-canaliculatus_F_contig1158:960..10841622928848.8272624-CDS-H-canaliculatus_F_contig1158:960..1084Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1158 961..1084 +
1696845587.6634834-CDS-H-canaliculatus_F_contig1158:960..10841696845587.6634834-CDS-H-canaliculatus_F_contig1158:960..1084Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1158 961..1084 +
1622928848.8397906-CDS-H-canaliculatus_F_contig1158:1757..18701622928848.8397906-CDS-H-canaliculatus_F_contig1158:1757..1870Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1158 1758..1870 +
1696845587.672674-CDS-H-canaliculatus_F_contig1158:1757..18701696845587.672674-CDS-H-canaliculatus_F_contig1158:1757..1870Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1158 1758..1870 +
1622928848.8631473-CDS-H-canaliculatus_F_contig1158:2038..22111622928848.8631473-CDS-H-canaliculatus_F_contig1158:2038..2211Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1158 2039..2211 +
1696845587.6862173-CDS-H-canaliculatus_F_contig1158:2038..22111696845587.6862173-CDS-H-canaliculatus_F_contig1158:2038..2211Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1158 2039..2211 +
1622928848.8836956-CDS-H-canaliculatus_F_contig1158:2860..29701622928848.8836956-CDS-H-canaliculatus_F_contig1158:2860..2970Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1158 2861..2970 +
1696845587.69683-CDS-H-canaliculatus_F_contig1158:2860..29701696845587.69683-CDS-H-canaliculatus_F_contig1158:2860..2970Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1158 2861..2970 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1158.1393.1prot_H-canaliculatus_F_contig1158.1393.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1158 171..2970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1158.1393.1

>prot_H-canaliculatus_F_contig1158.1393.1 ID=prot_H-canaliculatus_F_contig1158.1393.1|Name=mRNA_H-canaliculatus_F_contig1158.1393.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=206bp
MQDVKDSLSFVSLDLDADLRAARLVRPGNPIVREYVLPDRKNVLKGYARE
VDWDARVKRRQQEDLGVEDEQQPQVLTMGNERFQIPEVLFNPSDVGLRQM
GLSEAVATCIERCPAELRPQFYANVLLTGGNCAIPNLKERLYSDLRASAP
IHCEVNVILPEEPMYHAWRGGSMFGASPEFGSFAVSKQEYDEFGHTICKI
RYADW*
back to top

mRNA from alignment at H-canaliculatus_F_contig1158:150..3457+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1158.1393.1 ID=mRNA_H-canaliculatus_F_contig1158.1393.1|Name=mRNA_H-canaliculatus_F_contig1158.1393.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3308bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1158:150..3457+ (Hapterophycus canaliculatus Oshoro5f female)
CTCATACCCGAAGCACAGATCATGCAAGATGTCAAGGATTCCCTCAGCTT
CGTGAGTCTGGACCTGGACGCCGATCTGCGCGCGGCACGCCTCGTGAGAC
CGGGAAACCCGATCGTCAGGTGAGACTCGAACGCTAGCAGCAGCGAGCGA
GGAGGTCGAGTGGGAGCCACTTCAGCGGTGCCGCCGTGGGCTGCCGGAAG
CTTGGAATTTTGCCGTCGAGGCTCTCACTTCTGGCGGGGTATTGATGGGA
CGCTTAGCGTCGGAAGCGTGGCGGCTTTGAGGCTGTCTTCGCAGAAGGTT
CTCCTCGTCCTTTTCTTGTCTCTCGCACGCACACACACGCGCTCACCCAT
CTTACTCCAAGTTACTGTTTTCTTGTTGGAAAAAGAGTCCACACCACCAA
ACGAAGACCCTCCTCTGAGACCAAGTGTAGCGACTCAGGGTCATTTGCCC
CGCGTTTTTTGCTCCAGTCGTTCCATACGTGTGTGTGTCTGTGTGTCTGT
GTGTCTGTGTGTGTCTGTGTGTCTGTGTGTTGGTGTTTGTTGGTGTGTAT
TGCATCAGGTAGCCGGCTGTATATTTAGGAAAAAGACAAAGAAGCCAAAC
AACACTTCAAGGAAGACCCTCCTCCCAGGAGAAGTACAGCGATTCAGGGG
GATGTTTGCTTTCCTTCGTGGGGTTCTTCCCAAAAGCTCAAGCCGGAAAT
ATGAATATACCGTCCAATTCGCTGATTGAGCACGTGCCCTTGTGCCTAAC
TAGTACGGCATCTCTAACCTCAGCCGCCGCCCCGTCACCCTCCCCCCCCC
CCCGGCACCAGAGAATATGTCCTCCCAGACCGCAAGAACGTGTTGAAGGG
GTACGCGCGAGAGGTGGACTGGGACGCCCGCGTCAAGCGTCGGCAGCAGG
AGGATCTCGGGGTGGAGGACGAACAGCAGCCACAGGTGCGTAAGCCACAC
GCGCCAAGGCGGGCGATGTGTGCCTTTTACCGAGCACACTTTTCTTGCAT
GGACGGAGGCTTTGGGGAGGAGGGTCGTCGTTCATGTCGTGCGTCAAGTG
TCATTGTTGCTATTGCTGTGACCGGTTGTGTTACTGCTTCATCGTTGGTG
CTTGGCGTCGCCGGGATTGCTGCTGCTCCTGTTGCTCTTGCTGTCGCCTC
TGACTTTTTCGCCGACTCGAGGCCGCCGCAACACTCGGGCTTGCATTTCG
GCGTCAAGCTCGTTGGTGCATCCCCCAATCTTCCTGCAGTGCGTTTGCTT
GCTTGTATCTCAGTGAGAATTCTATCCAGGAGTCGCCTGACGGTACTTCT
CACGTAGTCTCCACGTTGTCGTCGAGCCGGAGTGATGCTACTCTTCACAC
ACTCGCGCACATCACGCACGAGAAGGTTCACGCTTGCACGCATGCGGCCG
GTTGATGAGATACCACCGCTATTCGGCGTTCCTCGTTGTCGTTGGTTCTC
ACACCGGCTGATATTCGAAACGCATCTAGCACGTGATCGTAAAAGAAAAA
TCGTGCCCGAGAAGAAGATAAATTGGAAAAACAAGGATAGAACGTACCGC
TCCCCACCTCGACGCTTCGGGCCGTGACTGACGAAAGCTTGCGTTTTCGT
GTGCGCAGGTGCTCACGATGGGAAACGAGCGATTCCAGATCCCAGAGGTG
TTGTTCAATCCTTCCGACGTCGGCCTGAGGCAGATGGGGCTGTCGGAAGC
GGTGGCGACTTGCATCGAACGGTGGGTGGTCGCTGCACGTGGTGGTTGTG
TCCAGGCCTGAGAGGTTGAAGAACGTTTCGTCTTGTTGGGCTTCTCGCCG
TTCCTTCCTCCATCTCGAATGCGGGGTCTTATTAGTCAATATCCCCCCCC
CCCCCGCCACCGCCGATCCTACTCCCATTACCTCGCCAGGTGTCCCGCGG
AGCTGCGACCACAGTTCTATGCCAACGTACTCCTGACAGGGGGAAACTGC
GCCATCCCAAACTTGAAAGAGCGACTGTACAGCGACCTCCGGGCCTCCGC
TCCCATTCATTGCGAGGTCAACGTTATCCTTCCCGAAGAGCCAATGTATC
ACGCCTGGCGAGGTGGGTTTATGTGTTATTTTGTCGGTATTTTTCTCGAG
GTGTTGTTATTGGTGTGATGACAGTAGTCTTGTTCTTGCTTGATTATGCT
GGTGTGCTGCCCTCCAGGCGAACCCGCGCAACGTTTGACCCTCGGACATG
AGCTTCCTTCCAGCGTGAACTAAAATTCGCGTGATTTTATAAAACAAGAC
AACAACACCATAAAAATTCGCGTGATTCCTCACAGTGTTTGTTTTTTCCC
TTACTAAGAGCTGGCGATGCTTCAAAACGCGTGTCGGCACACCCTCTTCG
CCGTTTCCTGCTTCCTTGCCGTGTTTTGGTGGGAGGCGGCGAGTCTCGCT
CGGTGGCTGTTCGGTGTCACGATGCTTGCGGCTCGCTGTAACACACCCGA
CGCGGCTGTGGAGCCATATGCCAGATTGCTCTCATGCTCATTTCTTGTGT
TCGCTCGTCCATTTCTGCTGTGGCTCCTTGTACTCCAAGCAATTGTGCGT
AATATACCGTGCTGTTTTTTTCATACTTGTAGGGCAGCATGTGTTCGGCT
TCCGATAAGGCAGTACTCTGGTTGCGGTGTATGGCCGGTTTCTTCGCATG
ACAAACGCGGCCATGAGTTTTCGGGCCTAACCTCCGCACGTGTTTATTTT
GTGCGGTCCAGGTGGGTCGATGTTCGGCGCAAGCCCGGAGTTCGGGAGCT
TCGCCGTTAGCAAACAGGAGTACGACGAGTTCGGACACACCATCTGCAAG
ATTAGATACGCTGACTGGTAGTTCACAGGGAGCTAGGCGGCAATTAGAGT
AAAGGGTCGAGTCGCTCGTTGGGAAAGTCCACCGTGGACACACCTCACCC
GCGGATCCGTAGACGTTATTGGAGGTTGGCAACGGCGTTGCGTGGATGCA
TGGCCCGCTTGCTCTGGTGTGGGGCGACAGGTCGTACCGAGATTCTGGAG
CTGGGCTCCTCACGAGGGACGACGTTGCCAGGTGTTGAGAGTTTGGTGCT
CGTTGTCTCTGTACATATCGCAAGCCTCTCCGTTCTGTGTTCGGGAAGCA
GCGCCCAAGAGGTTGTACAAACTGACAAAATTTTGAAAAACACGGCAAAG
GGACAGTTGTTTTTTTCAACCTCACGTGTTTTGTTTTCGTTTTCGGAGGT
CGGCGTTCACACCAGCAATTGGGTCTTGAAGCGCTTGGATAATACCGGCA
CAAGAAAAGCAATTTTCTGGGTTTGTCCATCCCCCATCCCACATTCTTGA
CGTCTTTG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1158:150..3457+

>mRNA_H-canaliculatus_F_contig1158.1393.1 ID=mRNA_H-canaliculatus_F_contig1158.1393.1|Name=mRNA_H-canaliculatus_F_contig1158.1393.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1236bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1158:150..3457+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCAAGATGTCAAGGATTCCCTCAGCTTCGTGAGTCTGGACCTGGACGC
CGATCTGCGCGCGGCACGCCTCGTGAGACCGGGAAACCCGATCGTCAGAT
GCAAGATGTCAAGGATTCCCTCAGCTTCGTGAGTCTGGACCTGGACGCCG
ATCTGCGCGCGGCACGCCTCGTGAGACCGGGAAACCCGATCGTCAGAGAA
TATGTCCTCCCAGACCGCAAGAACGTGTTGAAGGGGTACGCGCGAGAGGT
GGACTGGGACGCCCGCGTCAAGCGTCGGCAGCAGGAGGATCTCGGGGTGG
AGGACGAACAGCAGCCACAGAGAATATGTCCTCCCAGACCGCAAGAACGT
GTTGAAGGGGTACGCGCGAGAGGTGGACTGGGACGCCCGCGTCAAGCGTC
GGCAGCAGGAGGATCTCGGGGTGGAGGACGAACAGCAGCCACAGGTGCTC
ACGATGGGAAACGAGCGATTCCAGATCCCAGAGGTGTTGTTCAATCCTTC
CGACGTCGGCCTGAGGCAGATGGGGCTGTCGGAAGCGGTGGCGACTTGCA
TCGAACGGTGCTCACGATGGGAAACGAGCGATTCCAGATCCCAGAGGTGT
TGTTCAATCCTTCCGACGTCGGCCTGAGGCAGATGGGGCTGTCGGAAGCG
GTGGCGACTTGCATCGAACGGTGTCCCGCGGAGCTGCGACCACAGTTCTA
TGCCAACGTACTCCTGACAGGGGGAAACTGCGCCATCCCAAACTTGAAAG
AGCGACTGTACAGCGACCTCCGGGCCTCCGCTCCCATTCATTGCGAGGTC
AACGTTATCCTTCCCGAAGAGCCAATGTATCACGCCTGGCGAGGTGTCCC
GCGGAGCTGCGACCACAGTTCTATGCCAACGTACTCCTGACAGGGGGAAA
CTGCGCCATCCCAAACTTGAAAGAGCGACTGTACAGCGACCTCCGGGCCT
CCGCTCCCATTCATTGCGAGGTCAACGTTATCCTTCCCGAAGAGCCAATG
TATCACGCCTGGCGAGGTGGGTCGATGTTCGGCGCAAGCCCGGAGTTCGG
GAGCTTCGCCGTTAGCAAACAGGAGTACGACGAGTTCGGACACACCATCT
GCAAGATTAGATACGCTGACTGGTAGGTGGGTCGATGTTCGGCGCAAGCC
CGGAGTTCGGGAGCTTCGCCGTTAGCAAACAGGAGTACGACGAGTTCGGA
CACACCATCTGCAAGATTAGATACGCTGACTGGTAG
back to top