mRNA_H-canaliculatus_F_contig11578.1392.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11578.1392.1
Unique NamemRNA_H-canaliculatus_F_contig11578.1392.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11578.1392.1 vs. uniprot
Match: D8LGG9_ECTSI (FPL domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGG9_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 3.370e-27
Identity = 52/74 (70.27%), Postives = 62/74 (83.78%), Query Frame = 2 
Query:    2 AYSQILCRMWQVVENEGAGESTAMEGATSFFQDMLYYVQDVLSVADPAFSERMAQHLHRSFFRPAVLGGLVEAL 223
            AYSQ+LCRMWQ VE   +GE+TA++GATSFFQDMLYYVQDVLSV D   SE++AQHLHR FFRP VLG L +++
Sbjct:  232 AYSQVLCRMWQDVEPSSSGETTAIDGATSFFQDMLYYVQDVLSVGDSLLSEKLAQHLHRHFFRPVVLGALADSM 305
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11578.1392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGG9_ECTSI3.370e-2770.27FPL domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11578contigH-canaliculatus_F_contig11578:1114..2542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size343
Cds size342
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11578.1392.1prot_H-canaliculatus_F_contig11578.1392.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11578 1114..2541 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928848.6656067-CDS-H-canaliculatus_F_contig11578:1113..11381622928848.6656067-CDS-H-canaliculatus_F_contig11578:1113..1138Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11578 1114..1138 +
1696845587.600668-CDS-H-canaliculatus_F_contig11578:1113..11381696845587.600668-CDS-H-canaliculatus_F_contig11578:1113..1138Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11578 1114..1138 +
1622928848.6903412-CDS-H-canaliculatus_F_contig11578:1577..16701622928848.6903412-CDS-H-canaliculatus_F_contig11578:1577..1670Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11578 1578..1670 +
1696845587.6109123-CDS-H-canaliculatus_F_contig11578:1577..16701696845587.6109123-CDS-H-canaliculatus_F_contig11578:1577..1670Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11578 1578..1670 +
1622928848.7148478-CDS-H-canaliculatus_F_contig11578:2317..25411622928848.7148478-CDS-H-canaliculatus_F_contig11578:2317..2541Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11578 2318..2541 +
1696845587.6214168-CDS-H-canaliculatus_F_contig11578:2317..25411696845587.6214168-CDS-H-canaliculatus_F_contig11578:2317..2541Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11578 2318..2541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11578.1392.1

>prot_H-canaliculatus_F_contig11578.1392.1 ID=prot_H-canaliculatus_F_contig11578.1392.1|Name=mRNA_H-canaliculatus_F_contig11578.1392.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=114bp
RVLPDPLQDVASRGERGCGREHGNGGSDELLPRHAVLRAGRAQRGRPRFL
RKDGTTPPPQLFQTGCPRRAGGGVVRVGVGIGSGWSGSGGTGGSASGSGS
RGRGRQRSCFFNGG
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mRNA from alignment at H-canaliculatus_F_contig11578:1114..2542+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11578.1392.1 ID=mRNA_H-canaliculatus_F_contig11578.1392.1|Name=mRNA_H-canaliculatus_F_contig11578.1392.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1429bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11578:1114..2542+ (Hapterophycus canaliculatus Oshoro5f female)
CGCGTACTCCCAGATCCTCTGCAGGGTGAGTTTTAGATCCACGGCGCGCG
CGCGAGAGAGAGAGAGAGAGAGAGGGGGCGAGGCGATAGGCAGCCAGTCT
TATGATATCGGAAAGTGACTTTTCCGCTGAGCCCGTCGAAGTTGCGGGGG
TTGCTTCTACAAGGCCAGGCTGGCTCTTGATGTCAACATTACACAGCAGC
AGCAGAAGCAGCAGCAGTAACCCCCCTATTCCTACAGTCGTCTGCTCGAC
TACGTACTAGTTCCGCCTCCGCCTTCGATCGAGGCAACGCCGAACATCCA
GGAAGCACGCTGGAAACCCTCTAAAGTACCCTTCGTACCCTTGACTCTTG
TCTTGCTTACAAGTCCTCGACTTCACACGTTGTTATCGCCGGTGTCTCTG
GCTACACACGTGTCTGACCGTCCCTCTTCCTCTCCTATCCACACGTTTCC
CCCTGGCGTGCAAGATGTGGCAAGTCGTGGAGAACGAGGGTGCGGGCGAG
AGCACGGCAATGGAGGGAGCGACGAGCTTCTTCCAAGACATGCTGTACTA
CGTGCAGGTGAGCTCCTCGTGCGCGTCACGTTGCTCTCTCGCCGTTGGTA
CTACTTGTCTCGCGCAACGAAGGCGGGCTTCCGTTGAGTACTGTACCAGC
ACACCGCCGCCACCGCGACTGTAGCATCGCTTCCCTCGATACCGTACGAA
CAATCTACCTTGCTACTGATACCACGGAAAAATGGAAAATTCAACAAGAT
ACGGGCGGGGAAATAGAAATGGGAAAGTGCTGCTTCTACAAGTACTGTTC
GACGGTGTCGTAGGCAAAACAGTGGCAGTGGCGGCGAGAGCAGGCGGTAA
ATGCCAAAAGGCCCGAAATTTGCTGTCCTCGGTGTAGTCCCAGCATGGAC
ATTTCCCGCGGCAAAAATCCACGATAAAAATTGCCCAATGGCTCGAGGCT
TCAGTCAGTCAACCCACAACACCGAAAGACCTTGACAGGGTTGGGGCGGA
GGGGGGAGGGGTTGGGGGGATAGACAGAGTTGGTTTGAAGGGAAGGGGGG
GGGGCTTGTGACTCGCTCGTTCGGTCGGAAAGGAACGGCGCCCCCCCTCC
CTTCTTCAAAGCATGCGTGCGGCGTCAACCGTACGGCCGTCGAGGGGTTC
GGGGTTTTGAGCCGCGCGGCGCTCATTCTCGTGTCTCCCGCGACCGCACT
GCAGGACGTGCTCAGCGTGGCCGACCCCGCTTTCTCCGAAAGGATGGCAC
AACACCTCCACCGCAGCTTTTTCAGACCGGCTGTCCTCGGAGGGCTGGTG
GAGGCGTTGTCCGAGTCGGAGTCGGAATCGGAAGCGGTTGGAGCGGCAGC
GGGGGCACCGGCGGGAGCGCGAGCGGCAGCGGCAGCAGGGGCCGCGGGCG
ACAGAGGAGTTGCTTCTTCAATGGCGGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11578:1114..2542+

>mRNA_H-canaliculatus_F_contig11578.1392.1 ID=mRNA_H-canaliculatus_F_contig11578.1392.1|Name=mRNA_H-canaliculatus_F_contig11578.1392.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=684bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11578:1114..2542+ (Hapterophycus canaliculatus Oshoro5f female)
CGCGTACTCCCAGATCCTCTGCAGGCGCGTACTCCCAGATCCTCTGCAGG
ATGTGGCAAGTCGTGGAGAACGAGGGTGCGGGCGAGAGCACGGCAATGGA
GGGAGCGACGAGCTTCTTCCAAGACATGCTGTACTACGTGCAGATGTGGC
AAGTCGTGGAGAACGAGGGTGCGGGCGAGAGCACGGCAATGGAGGGAGCG
ACGAGCTTCTTCCAAGACATGCTGTACTACGTGCAGGACGTGCTCAGCGT
GGCCGACCCCGCTTTCTCCGAAAGGATGGCACAACACCTCCACCGCAGCT
TTTTCAGACCGGCTGTCCTCGGAGGGCTGGTGGAGGCGTTGTCCGAGTCG
GAGTCGGAATCGGAAGCGGTTGGAGCGGCAGCGGGGGCACCGGCGGGAGC
GCGAGCGGCAGCGGCAGCAGGGGCCGCGGGCGACAGAGGAGTTGCTTCTT
CAATGGCGGGGACGTGCTCAGCGTGGCCGACCCCGCTTTCTCCGAAAGGA
TGGCACAACACCTCCACCGCAGCTTTTTCAGACCGGCTGTCCTCGGAGGG
CTGGTGGAGGCGTTGTCCGAGTCGGAGTCGGAATCGGAAGCGGTTGGAGC
GGCAGCGGGGGCACCGGCGGGAGCGCGAGCGGCAGCGGCAGCAGGGGCCG
CGGGCGACAGAGGAGTTGCTTCTTCAATGGCGGG
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