mRNA_H-canaliculatus_F_contig10106.139.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10106.139.1
Unique NamemRNA_H-canaliculatus_F_contig10106.139.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10106.139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10106contigH-canaliculatus_F_contig10106:3505..4261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size510
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10106.139.1prot_H-canaliculatus_F_contig10106.139.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10106 3567..4098 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928639.777846-UTR-H-canaliculatus_F_contig10106:3504..35661622928639.777846-UTR-H-canaliculatus_F_contig10106:3504..3566Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10106 3505..3566 +
1696845508.0978196-UTR-H-canaliculatus_F_contig10106:3504..35661696845508.0978196-UTR-H-canaliculatus_F_contig10106:3504..3566Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10106 3505..3566 +
1622928639.8221283-UTR-H-canaliculatus_F_contig10106:4098..42611622928639.8221283-UTR-H-canaliculatus_F_contig10106:4098..4261Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10106 4099..4261 +
1696845508.130379-UTR-H-canaliculatus_F_contig10106:4098..42611696845508.130379-UTR-H-canaliculatus_F_contig10106:4098..4261Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10106 4099..4261 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928639.7927666-CDS-H-canaliculatus_F_contig10106:3566..36001622928639.7927666-CDS-H-canaliculatus_F_contig10106:3566..3600Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10106 3567..3600 +
1696845508.1099563-CDS-H-canaliculatus_F_contig10106:3566..36001696845508.1099563-CDS-H-canaliculatus_F_contig10106:3566..3600Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10106 3567..3600 +
1622928639.8115606-CDS-H-canaliculatus_F_contig10106:3847..40981622928639.8115606-CDS-H-canaliculatus_F_contig10106:3847..4098Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10106 3848..4098 +
1696845508.1213493-CDS-H-canaliculatus_F_contig10106:3847..40981696845508.1213493-CDS-H-canaliculatus_F_contig10106:3847..4098Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10106 3848..4098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10106.139.1

>prot_H-canaliculatus_F_contig10106.139.1 ID=prot_H-canaliculatus_F_contig10106.139.1|Name=mRNA_H-canaliculatus_F_contig10106.139.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=95bp
MCRCVLSPHVRSLELPLARSTSGDVPAVLFCFSLKKRSRIIAATTAIRLP
PKATSAGESEIYSGNNLRESISSSDTINGTNCSNNRNDSSRGKH*
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mRNA from alignment at H-canaliculatus_F_contig10106:3505..4261+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10106.139.1 ID=mRNA_H-canaliculatus_F_contig10106.139.1|Name=mRNA_H-canaliculatus_F_contig10106.139.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=757bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10106:3505..4261+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCCCTCCTGTGGCCGGTACGCCTGCCACACGTGTGTGTGTGTGTGCGT
GCGCGCGGGGGTATGTGTAGGTGTGTTCTGTCGCCGCACGTCAGATGCTT
ACAGGGGAAAACCCCAAGATGGTCTAAGAACAGCGCGGAGGAGAGACGAA
GCTCGTCCTACGACATATAGACTAAATGTGGCAATCAGACGCCTATACGT
TTTCCTGGTATCACCATCGACATCGAAGAAAATATCGGTTGTGACAACCC
GGGTGCAATGCCGATGGAAGTGGTAGGAAGAAAAGGGCTTTTGTCCCAAC
CTTGTACATCAATTAATCCTTGTTGTTTGGTGCTCAGCAGAAGCTCTCGA
GCTACCCCTAGCACGAAGTACCTCAGGAGATGTTCCTGCGGTGTTGTTTT
GTTTTTCTTTAAAAAAACGATCGAGAATAATAGCAGCGACGACAGCAATA
AGATTGCCGCCAAAAGCAACGTCGGCAGGAGAAAGCGAAATATATAGTGG
CAACAACCTCCGCGAGAGCATCAGCAGTAGCGACACCATCAACGGCACCA
ACTGCAGCAACAACAGAAATGATAGCAGTAGAGGTAAGCACTAACGCAAT
GCAATAACAACAACAACAACAACCACAACACAAACAGAGGGGAAAAGCAA
CAGCAAAGATGACGGCGTGCCACGTGTAGCGACAAGTGCAAGATTGCTCT
GGCGATGCCGTCCTTGGGTACCTGCGACCGATGAATCCCCTCACGACTCG
CTGCAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10106:3505..4261+

>mRNA_H-canaliculatus_F_contig10106.139.1 ID=mRNA_H-canaliculatus_F_contig10106.139.1|Name=mRNA_H-canaliculatus_F_contig10106.139.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=570bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10106:3505..4261+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGTAGGTGTGTTCTGTCGCCGCACGTCAGATATGTGTAGGTGTGTTC
TGTCGCCGCACGTCAGATCTCTCGAGCTACCCCTAGCACGAAGTACCTCA
GGAGATGTTCCTGCGGTGTTGTTTTGTTTTTCTTTAAAAAAACGATCGAG
AATAATAGCAGCGACGACAGCAATAAGATTGCCGCCAAAAGCAACGTCGG
CAGGAGAAAGCGAAATATATAGTGGCAACAACCTCCGCGAGAGCATCAGC
AGTAGCGACACCATCAACGGCACCAACTGCAGCAACAACAGAAATGATAG
CAGTAGAGGTAAGCACTAACTCTCGAGCTACCCCTAGCACGAAGTACCTC
AGGAGATGTTCCTGCGGTGTTGTTTTGTTTTTCTTTAAAAAAACGATCGA
GAATAATAGCAGCGACGACAGCAATAAGATTGCCGCCAAAAGCAACGTCG
GCAGGAGAAAGCGAAATATATAGTGGCAACAACCTCCGCGAGAGCATCAG
CAGTAGCGACACCATCAACGGCACCAACTGCAGCAACAACAGAAATGATA
GCAGTAGAGGTAAGCACTAA
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