mRNA_H-canaliculatus_F_contig10105.138.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10105.138.1
Unique NamemRNA_H-canaliculatus_F_contig10105.138.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10105.138.1 vs. uniprot
Match: D7FSP3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP3_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.280e-13
Identity = 82/216 (37.96%), Postives = 98/216 (45.37%), Query Frame = 1 
Query:    7 NNNGGCDFDGGDCCFCDCTDGVDYDCNQNGFDCIDPSSSCSEAHWTEERHGATSS----------GRASVDSTREQYSFSKIERKRYSSSTVGYAAVAIRPGLLSTSGSSS--VGAIVXXXXXXLLFVAAAIILAFLFKTGRLKPCQCCSRTVPVVVATPTPG--GVTAT----PAKAYPVVPQDHGDAPRPPAYGASEGG------SAPPPYNPV 582
            NNN GC++DGGDCC CDC D   Y+C  +GF C+DPSSSC+  H+ ++      S          G  S                    ST G A      G+ S  G     V    XXXXXX  F+AAA +L  LF T RLK  +CCS   P     P  G   V AT    P  A P       D P PPAYG+S+ G      SAPP  +PV
Sbjct:   44 NNNSGCEYDGGDCCSCDCFDDT-YECGTDGFTCLDPSSSCTYHHYYDDDGDLYDSPTYDYDVDDFGDDSXXXXXXXXXXXXXXXXXXXXSTSG-ALDLEGGGIPSDDGDDGAPVXXXXXXXXXXTAFLAAAAVLVCLFVTCRLKCSKCCSSPGPPAAPAPPAGHGSVQATTKTFPGPAAPAAAAPASDLPPPPAYGSSDHGATSTATSAPPDTHPV 257
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BLAST of mRNA_H-canaliculatus_F_contig10105.138.1 vs. uniprot
Match: A0A6H5K5D1_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5D1_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 9.020e-7
Identity = 26/40 (65.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    7 NNNGGCDFDGGDCCFCDCTDGVDYDCNQNGFDCIDPSSSC 126
            NN  GCD+DGGDCC CDC D   Y C   GF CIDP+SSC
Sbjct:   44 NNISGCDYDGGDCCSCDCLDDT-YQCGVVGFTCIDPTSSC 82
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BLAST of mRNA_H-canaliculatus_F_contig10105.138.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.990e-6
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:   10 NNGGCDFDGGDCCFCDCTDGVDYDCNQNGFDCIDPSSSCSEAHWT 144
            N+  C++DGGDCC CDC D   YDC   G+DC+DP+SSCS++  T
Sbjct:  425 NHADCEWDGGDCCECDCVDAT-YDCGVVGYDCLDPTSSCSDSPGT 468
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BLAST of mRNA_H-canaliculatus_F_contig10105.138.1 vs. uniprot
Match: A0A6H5KN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN00_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.520e-6
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    7 NNNGGCDFDGGDCCFCDCTDGVDYDCNQ-NGFDCIDPSSSCSEAHWTEE 150
            NNN  CD+DGGDCC CDC D   Y+C     F CIDPSSSC+  H+ ++
Sbjct:  143 NNNSNCDYDGGDCCSCDCFDDT-YECGSVTAFTCIDPSSSCTYHHYXDD 190
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BLAST of mRNA_H-canaliculatus_F_contig10105.138.1 vs. uniprot
Match: A0A6H5J6K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K0_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.330e-5
Identity = 29/64 (45.31%), Postives = 37/64 (57.81%), Query Frame = 1 
Query:    1 AGNNNGGCDFDGGDCCFCDCTD-GVDYDCNQNGFDCIDPSSSCSEAHWTEERHGATSSGRASVD 189
            +GNNN  CD+DGGDCC CDC D G  Y+C   G+ C+D +S C         +G+TS G    D
Sbjct:  371 SGNNNAACDYDGGDCCECDCYDYGEAYECGAFGYYCLDQTSIC---------YGSTSGGNFDSD 425
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10105.138.1 vs. uniprot
Match: D7FSN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSN8_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 8.260e-5
Identity = 64/195 (32.82%), Postives = 74/195 (37.95%), Query Frame = 1 
Query:   22 CDFDGGDCCFCDCTDGVDYDCNQNGFDCIDPSSSCSEAHWTEERHGATSSGRASVDSTREQYSFSKIERKRYSSSTVGYAAVAIRPGLLSTSGSSSVGAIVXXXXXXLLFVAAAIILAFLFKTGRLKPCQC---CSRTVPVVVATPTP--------GGVTATPAKAYPVVPQDHGDAPRPPAYGASEG-GSAPPP 570
            CD+DGGDCC CDC D + Y C    +DC++PS+ C          G        V                                         VGAIV      +LF+AA IILA LFK G LKPC C   C+   P   AT           GG   +  K YP V      A  PPA  A EG GS P P
Sbjct:   80 CDWDGGDCCECDCVDAL-YTCGVADYDCLNPSA-C----------GGDEDDXXDVP----------------------------------------VGAIVGGVIGGVLFLAAVIILAVLFKKGCLKPCACGDSCACCEPGPPATXXXXXXXXXAGGGSAPSVVKGYPEVYSSAAVAQLPPA--AYEGPGSVPAP 220
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10105.138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FSP3_ECTSI1.280e-1337.96LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K5D1_9PHAE9.020e-765.00LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JVP4_9PHAE1.990e-655.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN00_9PHAE2.520e-655.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J6K0_9PHAE3.330e-545.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSN8_ECTSI8.260e-532.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10105contigH-canaliculatus_F_contig10105:882..4063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size582
Cds size582
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10105.138.1prot_H-canaliculatus_F_contig10105.138.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10105 882..4063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928639.6880202-CDS-H-canaliculatus_F_contig10105:881..9241622928639.6880202-CDS-H-canaliculatus_F_contig10105:881..924Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10105 882..924 +
1696845508.0301688-CDS-H-canaliculatus_F_contig10105:881..9241696845508.0301688-CDS-H-canaliculatus_F_contig10105:881..924Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10105 882..924 +
1622928639.7006667-CDS-H-canaliculatus_F_contig10105:1092..11821622928639.7006667-CDS-H-canaliculatus_F_contig10105:1092..1182Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10105 1093..1182 +
1696845508.040109-CDS-H-canaliculatus_F_contig10105:1092..11821696845508.040109-CDS-H-canaliculatus_F_contig10105:1092..1182Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10105 1093..1182 +
1622928639.712134-CDS-H-canaliculatus_F_contig10105:1639..17081622928639.712134-CDS-H-canaliculatus_F_contig10105:1639..1708Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10105 1640..1708 +
1696845508.0523956-CDS-H-canaliculatus_F_contig10105:1639..17081696845508.0523956-CDS-H-canaliculatus_F_contig10105:1639..1708Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10105 1640..1708 +
1622928639.7230947-CDS-H-canaliculatus_F_contig10105:2368..24611622928639.7230947-CDS-H-canaliculatus_F_contig10105:2368..2461Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10105 2369..2461 +
1696845508.0624764-CDS-H-canaliculatus_F_contig10105:2368..24611696845508.0624764-CDS-H-canaliculatus_F_contig10105:2368..2461Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10105 2369..2461 +
1622928639.7350001-CDS-H-canaliculatus_F_contig10105:3776..40631622928639.7350001-CDS-H-canaliculatus_F_contig10105:3776..4063Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10105 3777..4063 +
1696845508.07644-CDS-H-canaliculatus_F_contig10105:3776..40631696845508.07644-CDS-H-canaliculatus_F_contig10105:3776..4063Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10105 3777..4063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10105.138.1

>prot_H-canaliculatus_F_contig10105.138.1 ID=prot_H-canaliculatus_F_contig10105.138.1|Name=mRNA_H-canaliculatus_F_contig10105.138.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=194bp
AGNNNGGCDFDGGDCCFCDCTDGVDYDCNQNGFDCIDPSSSCSEAHWTEE
RHGATSSGRASVDSTREQYSFSKIERKRYSSSTVGYAAVAIRPGLLSTSG
SSSVGAIVGGVIGGLLFVAAAIILAFLFKTGRLKPCQCCSRTVPVVVATP
TPGGVTATPAKAYPVVPQDHGDAPRPPAYGASEGGSAPPPYNPV
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mRNA from alignment at H-canaliculatus_F_contig10105:882..4063+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10105.138.1 ID=mRNA_H-canaliculatus_F_contig10105.138.1|Name=mRNA_H-canaliculatus_F_contig10105.138.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3182bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10105:882..4063+ (Hapterophycus canaliculatus Oshoro5f female)
GCAGGGAACAACAACGGAGGCTGCGATTTCGATGGCGGCGACTGTGAGTG
GAGATCGAAGAACACGTTTGTTCGACTTGCAGTTTAGATTGGGAGCATGG
AAGGATGATTGACAACATACGCCACCGTTGAGATGGAGTGCCTGAAATTT
TACTGCAGGTCTTGGCAGCCAATTTCCTCCCGTGCTTGGTGTGCTGCCGG
ATTCGACGCAGGTTGTTTTTGCGACTGCACCGATGGGGTCGATTATGATT
GCAATCAAAACGGATTCGACTGCATTGATCCAAGCTCTTCTTGCAGCGAA
GGTGAGAAATGATCGGGTAAGGCGTGCCGTGTTCTTTTTGTCGGATGCCC
GACAGCACGTCATGTGCCCAACGATAATGACCAGGCAGGCTGAATGTTGA
CCTGGGAGGTTGACCTTTCACTTGTAGTGACTCAAAACCCGATCGACAGA
GGCAGGCCTCAAGGCAAACAAAGTGCAGAATTCACCCGTGACCGGCCAAG
GTTCACCGATGGTATGTGGTAGAGGGAGCAAACCTTTCCTTTGCGCAACC
TCTCAACACGCTCACGAGAGTTATTTTGCGGCTGCGACCTGTAAGTAGGT
GAAGTCCATTCCGCGATCTTGCTCGGCACATGCATCTCTACAGATGCCTG
TCGCGCTTGTTGAAGGACATCTCCGTGCTTCCTAAGCGTTTCTGGGTAGG
TCGAAACCACAATCTGGGTTGTGCAGCATCCCTCCTCCACGATTTATCTG
CTCACTAGCCCACTGGACAGAGGAAAGGCATGGCGCAACAAGTTCCGGCC
GCGCATCTGTTGACTCCACTCGAGAACGTTTCGCACGATAGATCAGCTCT
CTTTTAAACGGCGGAAAAAACGAGTTGCGCTGTGTCTTACGTGAACAGTA
TAGGAGGGAAGGGTTTCGGCGGCATCCGCGGCCACAATCACCTTTGAATC
CCAGGACGACAGGAAATGTTGATTTACAGAGAGCACACAGTCGAGTGTCG
TGTCTCAGGCTTACTCTTGCGGAGGAATTCGTATCTCGCAGAGAGACTCG
TGACGAACGACCGGAAGAGCACAAACAAGACTGCTCTCCTCATTCGGAAC
GCACCGTCTTAGAACGGATCATGTGAGGGGAACGTTCTTTGGTGAAAAGA
CGACGTATATGACCCGCGATTGCCTTGGTCCCACAATGTAGACTGGGCTG
TCATGGAGGGGCTTAGCACCCACTTTGCAGAGATGGAAACTGGCTGGAAC
ACGAGTGTAGTCGGTGAACTGGCCCTTGGGTCTTCTGAAAAACGTTGTTA
CCATTGTGGCTTCATTTTGTTGGCGTTCCCGCCGCATCAACGCTCTCAAC
TAGGGAACACTCGAGTTGAGGTGGTTAAATCTGCGATAAGAGTTGACGTG
GGTGTTTTTCATGAAAACACATCTTAGGGATCCGGAATGTGGAATGTTGC
ATGACGCACCCTTGTGAGCCTTACAGATATACTCCAGAGTATTCGTTTTC
CAAAATCGAACGGAAAAGGTACTCATCTAGTACCGTAGGATATGCGGCAG
TGGCGATCCGTCCCGGCCTCTTGAGTACGTGTTTTATTTATATCACTTTC
TCTAGTAATGACTGACACATACCGGGCCTTCGTTCAGGACCCTTGGGCTT
GCCAGAATGGACTCTCGGCCACCTCAGTTCCTTTCGTGCATGGGTCGTTC
CCCACGTTGATATATGGCTAGTTTTAGGTTTCAAAGCTTCGCGCTGCACT
AAATACGCATGATTTCCCTCGTACACCTGAAGCTGTACATAACTCAAACG
TCAATGTGTCCACCGTAGACTGGAGCAAGCCGTGACGATGAACAACTGTC
TTGCAAAATGTAGTCCGCATTTATTTGCCTGAATCCCACCGTGTTCTCGT
GCTCCGGCTGCTGCTCACAAATTGAGGTCCACAATCGATTGCTGTTGCGG
CACGACGATCAAACTTCGTCACTCTTGAGGTGCCTTTAGTGCAACTGCAG
TTGTTGACTACCCAACAAGAATGGGGCGATTCTTTCTAGCCTGACTGAGT
TCCCTCGAGCCGTCTACTAGACAGCAGGGCCCCTGGATATATCGAGTAAT
GGTACTCACTTGTGACGGACATTTATTTCTTCGCCGACTGACGATTCCCG
CCAACCGCGCCTTCCATCTTGGTGCGAATGTAATGTTGGTCGTCGGCCGA
CGGGGATCCTGGGACATCACGGTATGATCAGTGGAAGATAGCGGAGAAGG
TGAGGCTCACCAACCTTCATGACTTTCTTCTTTCGAGCGATGAAGATGAA
CCGCCACATGCTGAACAGCCAATGCATACGCACATCTTTCCCGTCCCGAC
TATAAGGGCCGCTGAATGTAGTGTGAAAGGGATTGTCGATCGATTCGCAT
TCGTCCGCGTTCATACTTCGACAGATCCGATCCGCATGTGCACCTTTAGC
CAACGGGAACCTTTGCGTATATGATTTTGTAGTTCTTCTGGCTTAATTTG
TTGCTTCTACTCGTGTCTTTAGTTGCCTAAGCAGGTTTGTTTACGACTTG
AAAATTTTCGCCCCTTGCATTTACTCCGACCGGTTGGGTATTTTCGCTGC
CGCGATCGCCGTTACTCCCGTTTACATGTCTGTTACTTGTAGAGTCGTGA
CTGGTTCGTTTTTGATAACGTTCAGGTCACCTCGATCAAAACTGATTCCC
AAGATCTACTGGTGATGCAGGGCCCAACTTCGCGATGGCGCATGCATGCT
TGGGTTACGCATGAGCTCCTTGTGAAGGGGTAGGAGATAAAACACGTGTC
GATCATCTTCCCAAAGCCCAAGTTCCTCTTGTTGCCGTTTTGCTCAAACC
GTTGCCCACACTGTTTTTTCCGATACCCCGCCACAATAAATCGAGCAGGT
TCGTCGTCAGTGGGTGCCATCGTTGGCGGCGTGATCGGGGGCTTACTTTT
CGTGGCCGCTGCGATTATCTTGGCTTTTCTGTTCAAGACCGGTCGCCTGA
AGCCGTGCCAGTGTTGCAGCCGTACGGTTCCTGTGGTAGTCGCTACTCCT
ACTCCTGGCGGCGTTACGGCGACACCAGCTAAGGCTTACCCCGTGGTTCC
TCAGGATCATGGCGATGCTCCTCGTCCTCCTGCTTATGGAGCCTCTGAGG
GAGGTTCGGCGCCGCCCCCCTATAACCCCGTA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10105:882..4063+

>mRNA_H-canaliculatus_F_contig10105.138.1 ID=mRNA_H-canaliculatus_F_contig10105.138.1|Name=mRNA_H-canaliculatus_F_contig10105.138.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1164bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10105:882..4063+ (Hapterophycus canaliculatus Oshoro5f female)
GCAGGGAACAACAACGGAGGCTGCGATTTCGATGGCGGCGACTGCAGGGA
ACAACAACGGAGGCTGCGATTTCGATGGCGGCGACTGTTGTTTTTGCGAC
TGCACCGATGGGGTCGATTATGATTGCAATCAAAACGGATTCGACTGCAT
TGATCCAAGCTCTTCTTGCAGCGAAGGTTGTTTTTGCGACTGCACCGATG
GGGTCGATTATGATTGCAATCAAAACGGATTCGACTGCATTGATCCAAGC
TCTTCTTGCAGCGAAGCCCACTGGACAGAGGAAAGGCATGGCGCAACAAG
TTCCGGCCGCGCATCTGTTGACTCCACTCGAGAACCCCACTGGACAGAGG
AAAGGCATGGCGCAACAAGTTCCGGCCGCGCATCTGTTGACTCCACTCGA
GAACAGTATTCGTTTTCCAAAATCGAACGGAAAAGGTACTCATCTAGTAC
CGTAGGATATGCGGCAGTGGCGATCCGTCCCGGCCTCTTGAGTACGTAGT
ATTCGTTTTCCAAAATCGAACGGAAAAGGTACTCATCTAGTACCGTAGGA
TATGCGGCAGTGGCGATCCGTCCCGGCCTCTTGAGTACGTCAGGTTCGTC
GTCAGTGGGTGCCATCGTTGGCGGCGTGATCGGGGGCTTACTTTTCGTGG
CCGCTGCGATTATCTTGGCTTTTCTGTTCAAGACCGGTCGCCTGAAGCCG
TGCCAGTGTTGCAGCCGTACGGTTCCTGTGGTAGTCGCTACTCCTACTCC
TGGCGGCGTTACGGCGACACCAGCTAAGGCTTACCCCGTGGTTCCTCAGG
ATCATGGCGATGCTCCTCGTCCTCCTGCTTATGGAGCCTCTGAGGGAGGT
TCGGCGCCGCCCCCCTATAACCCCGTACAGGTTCGTCGTCAGTGGGTGCC
ATCGTTGGCGGCGTGATCGGGGGCTTACTTTTCGTGGCCGCTGCGATTAT
CTTGGCTTTTCTGTTCAAGACCGGTCGCCTGAAGCCGTGCCAGTGTTGCA
GCCGTACGGTTCCTGTGGTAGTCGCTACTCCTACTCCTGGCGGCGTTACG
GCGACACCAGCTAAGGCTTACCCCGTGGTTCCTCAGGATCATGGCGATGC
TCCTCGTCCTCCTGCTTATGGAGCCTCTGAGGGAGGTTCGGCGCCGCCCC
CCTATAACCCCGTA
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