mRNA_H-canaliculatus_F_contig10104.137.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10104.137.1
Unique NamemRNA_H-canaliculatus_F_contig10104.137.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig10104.137.1 vs. uniprot
Match: D7FMV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV6_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 1.360e-37
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 1
Query:    1 SPPLFRQGNLDHFEAIVEAVVDWVPEGSGVCELYAGVGVLGLNVAAKAAFVRCSDVNSFNPRSFERSR 204
            SPPLFRQGNLDHFE+IV+AVVDWVPEGSGVCELYAGVGVLGLNVAAKAAFVRCSDVNSFNPRSFERSR
Sbjct:  338 SPPLFRQGNLDHFESIVQAVVDWVPEGSGVCELYAGVGVLGLNVAAKAAFVRCSDVNSFNPRSFERSR 405          
BLAST of mRNA_H-canaliculatus_F_contig10104.137.1 vs. uniprot
Match: A0A836CA04_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA04_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 6.840e-23
Identity = 47/68 (69.12%), Postives = 55/68 (80.88%), Query Frame = 1
Query:    1 SPPLFRQGNLDHFEAIVEAVVDWVPEGSGVCELYAGVGVLGLNVAAKAAFVRCSDVNSFNPRSFERSR 204
            SP LFRQ NLD F  IVEAV +W P G+ VCELYAGVG+LGL+VA KA +VRCSDVN+ NPR+F R+R
Sbjct:  379 SPALFRQANLDQFGRIVEAVREWTPNGAAVCELYAGVGLLGLSVADKAEWVRCSDVNAANPRAFARAR 446          
BLAST of mRNA_H-canaliculatus_F_contig10104.137.1 vs. uniprot
Match: A0A7S1NUF9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NUF9_9EUGL)

HSP 1 Score: 83.2 bits (204), Expect = 3.040e-17
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    4 PPLFRQGNLDHFEAIVEAVVDWVPEGSGVCELYAGVGVLGLNVAAK--AAFVRCSDVNSFNPRSFERS 201
            P +FRQ NLD FE I++ V +WVPEGS VCELYAGVG++GLNV  +  A +VRCSD N  N R F+ +
Sbjct:  177 PTVFRQANLDAFEHIIDTVCEWVPEGSRVCELYAGVGIIGLNVLLRRSAQWVRCSDGNPNNLRPFQEA 244          
BLAST of mRNA_H-canaliculatus_F_contig10104.137.1 vs. uniprot
Match: A0A7S2DGR0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DGR0_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.960e-15
Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    1 SPPLFRQGNLDHFEAIVEAVVDWVPEGSGVCELYAGVGVLGLNVAAKAAFVRCSDVNSFNPRSFERS 201
            SP  FRQ NLD F  I+E V   VP  S VCELYAGVG++GL++A K A VRCSD N  N R+FE++
Sbjct:  189 SPMNFRQANLDAFAGILEQVASHVPVDSVVCELYAGVGLIGLSIAHKCAEVRCSDENPANVRAFEKA 255          
BLAST of mRNA_H-canaliculatus_F_contig10104.137.1 vs. uniprot
Match: A0A7S4CJ64_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CJ64_9EUGL)

HSP 1 Score: 73.2 bits (178), Expect = 6.470e-15
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 SPPLFRQGNLDHFEAIVEAVVDWVPEGSGVCELYAGVGVLGLNVAAK--AAFVRCSDVN 171
            +P +FRQ NLD FE I++ VV +VP+GS VCELY+G+GV+GLNV  +  A +VRCSD N
Sbjct:   12 TPAIFRQANLDAFERIIDQVVAFVPKGSRVCELYSGIGVIGLNVLMRTEAEWVRCSDNN 70          
BLAST of mRNA_H-canaliculatus_F_contig10104.137.1 vs. uniprot
Match: A0A8J6CFF2_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CFF2_DIALT)

HSP 1 Score: 75.1 bits (183), Expect = 3.230e-14
Identity = 37/56 (66.07%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    4 PPLFRQGNLDHFEAIVEAVVDWVPEGSGVCELYAGVGVLGLNVAAKAAFVRCSDVN 171
            P +FRQ NLD FEAIV  V D VP G+ V ELYAGVG+LGLN   +A  VRCSDVN
Sbjct:  261 PFVFRQANLDAFEAIVRQVADAVPAGAAVAELYAGVGILGLNCVERALSVRCSDVN 316          
BLAST of mRNA_H-canaliculatus_F_contig10104.137.1 vs. uniprot
Match: B7G3V9_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G3V9_PHATC)

HSP 1 Score: 74.3 bits (181), Expect = 6.400e-14
Identity = 40/74 (54.05%), Postives = 46/74 (62.16%), Query Frame = 1
Query:    1 SPPLFRQGNLDHFEAIVEAVVDWVPEGSGVCELYAGVGVLGLNVAAKAA-------FVRCSDVNSFNPRSFERS 201
            SP  FRQGNLD F+ +   V   VP GS VCELYAGVG+LGL   A  A       ++RCSD N  NPR F+RS
Sbjct:  360 SPLTFRQGNLDGFDVLATDVARAVPGGSKVCELYAGVGLLGLTTLAHLAKEGTPLEWIRCSDENPSNPRCFQRS 433          
BLAST of mRNA_H-canaliculatus_F_contig10104.137.1 vs. uniprot
Match: A0A7S2SN36_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN36_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.220e-13
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 SPPLFRQGNLDHFEAIVEAVVDWVPEGSGVCELYAGVGVLGLNVAAKAAFVRCSDVNSFNPRSFERSR 204
            SP +FRQ NLD F  IV  +   +P GS VCELY G+G++GL+V    + +RCSD N  N +SFE SR
Sbjct:   30 SPQVFRQANLDAFADIVARLSQHIPPGSIVCELYGGIGLIGLSVVHLCSELRCSDDNPNNEKSFELSR 97          
BLAST of mRNA_H-canaliculatus_F_contig10104.137.1 vs. uniprot
Match: A0A1Z5K4J9_FISSO (Methyltransferase-like protein 6 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K4J9_FISSO)

HSP 1 Score: 69.7 bits (169), Expect = 2.680e-12
Identity = 39/77 (50.65%), Postives = 46/77 (59.74%), Query Frame = 1
Query:    1 SPPLFRQGNLDHFEAIVEAVVDWVPEGSGVCELYAGVGVLGL----------NVAAKAAFVRCSDVNSFNPRSFERS 201
            SP  FRQGNLD F+ I E V   +P GS VCELYAGVG+LGL          N +A   ++RCSD N  N R F R+
Sbjct:  254 SPLTFRQGNLDGFDIIAEDVARAIPGGSKVCELYAGVGLLGLTALSYHANEENGSAPLPWIRCSDENPSNSRCFYRA 330          
BLAST of mRNA_H-canaliculatus_F_contig10104.137.1 vs. uniprot
Match: A0A7S4A483_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A483_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 9.250e-12
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    1 SPPLFRQGNLDHFEAIVEAVVDWVPEGSGVCELYAGVGVLGLNVAAKAAFVRCSDVNSFNPRSFERSR 204
            +P  FRQ NL  F  +VE +  WVP+ S VCELYAGVG +GL +  K + +RCS+ N      FE+SR
Sbjct:  274 TPLTFRQANLRAFAGLVERLATWVPDDSHVCELYAGVGAIGLALRPKLSSLRCSETNENVLDCFEKSR 341          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10104.137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMV6_ECTSI1.360e-3797.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CA04_9STRA6.840e-2369.12S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S1NUF9_9EUGL3.040e-1758.82Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S2DGR0_9STRA3.960e-1558.21Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4CJ64_9EUGL6.470e-1559.32Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A8J6CFF2_DIALT3.230e-1466.07Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
B7G3V9_PHATC6.400e-1454.05Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2SN36_9STRA2.220e-1351.47Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1Z5K4J9_FISSO2.680e-1250.65Methyltransferase-like protein 6 n=2 Tax=Fistulife... [more]
A0A7S4A483_9STRA9.250e-1248.53Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10104contigH-canaliculatus_F_contig10104:196..402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.2
Seed ortholog evalue3.6e-31
Seed eggNOG ortholog2880.D7FMV6
EggNOG free text desc.RNA methyltransferase activity
EggNOG OGs2QTKF@2759,COG2265@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928639.6555483-CDS-H-canaliculatus_F_contig10104:195..4021622928639.6555483-CDS-H-canaliculatus_F_contig10104:195..402Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10104 196..402 +
1696845508.0142198-CDS-H-canaliculatus_F_contig10104:195..4021696845508.0142198-CDS-H-canaliculatus_F_contig10104:195..402Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10104 196..402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10104.137.1prot_H-canaliculatus_F_contig10104.137.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10104 196..402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10104.137.1

>prot_H-canaliculatus_F_contig10104.137.1 ID=prot_H-canaliculatus_F_contig10104.137.1|Name=mRNA_H-canaliculatus_F_contig10104.137.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=69bp
SPPLFRQGNLDHFEAIVEAVVDWVPEGSGVCELYAGVGVLGLNVAAKAAF
VRCSDVNSFNPRSFERSR*
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mRNA from alignment at H-canaliculatus_F_contig10104:196..402+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10104.137.1 ID=mRNA_H-canaliculatus_F_contig10104.137.1|Name=mRNA_H-canaliculatus_F_contig10104.137.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=207bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10104:196..402+ (Hapterophycus canaliculatus Oshoro5f female)
AGCCCTCCGCTGTTCAGGCAGGGCAACCTGGACCACTTTGAGGCCATCGT CGAGGCCGTGGTAGACTGGGTGCCCGAAGGGTCGGGGGTGTGCGAGCTCT ATGCCGGGGTCGGGGTTCTCGGGCTCAACGTGGCCGCCAAGGCCGCCTTT GTCCGCTGCTCGGACGTCAACTCGTTCAACCCGCGCAGCTTCGAGAGGTC GAGGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10104:196..402+

>mRNA_H-canaliculatus_F_contig10104.137.1 ID=mRNA_H-canaliculatus_F_contig10104.137.1|Name=mRNA_H-canaliculatus_F_contig10104.137.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=414bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10104:196..402+ (Hapterophycus canaliculatus Oshoro5f female)
AGCCCTCCGCTGTTCAGGCAGGGCAACCTGGACCACTTTGAGGCCATCGT
CGAGGCCGTGGTAGACTGGGTGCCCGAAGGGTCGGGGGTGTGCGAGCTCT
ATGCCGGGGTCGGGGTTCTCGGGCTCAACGTGGCCGCCAAGGCCGCCTTT
GTCCGCTGCTCGGACGTCAACTCGTTCAACCCGCGCAGCTTCGAGAGGTC
GAGGTAGAGCCCTCCGCTGTTCAGGCAGGGCAACCTGGACCACTTTGAGG
CCATCGTCGAGGCCGTGGTAGACTGGGTGCCCGAAGGGTCGGGGGTGTGC
GAGCTCTATGCCGGGGTCGGGGTTCTCGGGCTCAACGTGGCCGCCAAGGC
CGCCTTTGTCCGCTGCTCGGACGTCAACTCGTTCAACCCGCGCAGCTTCG
AGAGGTCGAGGTAG
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