mRNA_H-canaliculatus_F_contig1010.133.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1010.133.1
Unique NamemRNA_H-canaliculatus_F_contig1010.133.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1010.133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1010contigH-canaliculatus_F_contig1010:25624..26347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size724
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1010.133.1prot_H-canaliculatus_F_contig1010.133.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1010 25812..26231 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928638.9481683-UTR-H-canaliculatus_F_contig1010:25623..258111622928638.9481683-UTR-H-canaliculatus_F_contig1010:25623..25811Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1010 25624..25811 +
1696845507.6478267-UTR-H-canaliculatus_F_contig1010:25623..258111696845507.6478267-UTR-H-canaliculatus_F_contig1010:25623..25811Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1010 25624..25811 +
1622928638.99856-UTR-H-canaliculatus_F_contig1010:26231..263471622928638.99856-UTR-H-canaliculatus_F_contig1010:26231..26347Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1010 26232..26347 +
1696845507.666041-UTR-H-canaliculatus_F_contig1010:26231..263471696845507.666041-UTR-H-canaliculatus_F_contig1010:26231..26347Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1010 26232..26347 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928638.9778166-CDS-H-canaliculatus_F_contig1010:25811..262311622928638.9778166-CDS-H-canaliculatus_F_contig1010:25811..26231Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1010 25812..26231 +
1696845507.6576316-CDS-H-canaliculatus_F_contig1010:25811..262311696845507.6576316-CDS-H-canaliculatus_F_contig1010:25811..26231Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1010 25812..26231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1010.133.1

>prot_H-canaliculatus_F_contig1010.133.1 ID=prot_H-canaliculatus_F_contig1010.133.1|Name=mRNA_H-canaliculatus_F_contig1010.133.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=140bp
MPSVSDAQPIFLRRSEPVRHCTCTAVDGTRRGVWIQRALWNSDVLVGHGT
TGQCSHPRDAVVANASSHHHVRNANMARALRRKQRAISVDLSFLTSSVFL
VLRIVPFFQRLFVSVGFSTRQTRPPRRLLRIARVERLGE*
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mRNA from alignment at H-canaliculatus_F_contig1010:25624..26347+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1010.133.1 ID=mRNA_H-canaliculatus_F_contig1010.133.1|Name=mRNA_H-canaliculatus_F_contig1010.133.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=724bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1010:25624..26347+ (Hapterophycus canaliculatus Oshoro5f female)
AGATCATGCGCGTGCCGCGTGCCGGCAGTTGAGGACGCGCAGCAGATCAA
GAAGAGAACAAAAAACTCCTTGGACACTTGTTTCACAACGAGACGTTGTC
CCCATCGTCTGGGCTCCGTCTCTCGCTAGGCTGGAGCGATGGTCGATCCG
TTCGGTTCTGTGGGGGCGACTTGCGTCGAAAGCGCGGCATGCCTTCGGTG
TCCGATGCACAGCCGATCTTTCTCAGGAGATCTGAACCTGTCCGGCACTG
TACTTGTACCGCTGTAGATGGTACACGACGAGGCGTCTGGATCCAACGCG
CGTTGTGGAACAGCGACGTCCTTGTAGGCCACGGTACAACAGGACAGTGC
TCCCATCCGCGTGACGCGGTAGTGGCAAACGCATCAAGCCATCACCACGT
TCGAAACGCCAACATGGCACGCGCGCTTCGCCGAAAGCAACGAGCAATCT
CAGTCGACCTCTCGTTCTTGACTTCAAGTGTCTTCCTCGTGTTGCGGATC
GTTCCTTTCTTTCAGCGTCTTTTTGTCAGCGTCGGCTTTTCCACGCGGCA
AACTCGCCCGCCAAGACGTCTACTCCGAATCGCCCGAGTCGAACGCCTCG
GTGAGTGAGCCGATCTTCGCTGCTGTTCCCCCCCTCAACGCCGACCTCCC
TTCGCTCCTGCACCCATCCCCCCGGCAGGACGGCGACATGGTCAGGTACG
ACTCGGAGGAAGAGTTCGTCGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1010:25624..26347+

>mRNA_H-canaliculatus_F_contig1010.133.1 ID=mRNA_H-canaliculatus_F_contig1010.133.1|Name=mRNA_H-canaliculatus_F_contig1010.133.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=840bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1010:25624..26347+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCTTCGGTGTCCGATGCACAGCCGATCTTTCTCAGGAGATCTGAACC
TGTCCGGCACTGTACTTGTACCGCTGTAGATGGTACACGACGAGGCGTCT
GGATCCAACGCGCGTTGTGGAACAGCGACGTCCTTGTAGGCCACGGTACA
ACAGGACAGTGCTCCCATCCGCGTGACGCGGTAGTGGCAAACGCATCAAG
CCATCACCACGTTCGAAACGCCAACATGGCACGCGCGCTTCGCCGAAAGC
AACGAGCAATCTCAGTCGACCTCTCGTTCTTGACTTCAAGTGTCTTCCTC
GTGTTGCGGATCGTTCCTTTCTTTCAGCGTCTTTTTGTCAGCGTCGGCTT
TTCCACGCGGCAAACTCGCCCGCCAAGACGTCTACTCCGAATCGCCCGAG
TCGAACGCCTCGGTGAGTGAATGCCTTCGGTGTCCGATGCACAGCCGATC
TTTCTCAGGAGATCTGAACCTGTCCGGCACTGTACTTGTACCGCTGTAGA
TGGTACACGACGAGGCGTCTGGATCCAACGCGCGTTGTGGAACAGCGACG
TCCTTGTAGGCCACGGTACAACAGGACAGTGCTCCCATCCGCGTGACGCG
GTAGTGGCAAACGCATCAAGCCATCACCACGTTCGAAACGCCAACATGGC
ACGCGCGCTTCGCCGAAAGCAACGAGCAATCTCAGTCGACCTCTCGTTCT
TGACTTCAAGTGTCTTCCTCGTGTTGCGGATCGTTCCTTTCTTTCAGCGT
CTTTTTGTCAGCGTCGGCTTTTCCACGCGGCAAACTCGCCCGCCAAGACG
TCTACTCCGAATCGCCCGAGTCGAACGCCTCGGTGAGTGA
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