mRNA_H-canaliculatus_F_contig11483.1308.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11483.1308.1
Unique NamemRNA_H-canaliculatus_F_contig11483.1308.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11483.1308.1 vs. uniprot
Match: A0A6H5KLR8_9PHAE (Gal_mutarotas_2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLR8_9PHAE)

HSP 1 Score: 320 bits (821), Expect = 2.450e-103
Identity = 161/202 (79.70%), Postives = 166/202 (82.18%), Query Frame = 1 
Query:    1 LWEETFDGHPDSKPDGPTSVGMDVYFPAGSDHVYGIPEHATSMALKTTASAGTEAEGADGETQPPPPHFSEPYRLYTLDVFEYELNSPAALYGSIPVMLGHRAGATAGVFWFNPTETFVDVEQGKGRTSRVCLCVCLFVCGAGEGKRARWISEGGALDLVLLPGPTPRQVFQQYAEVTGKPELPPMFSLGFHQCRWNYRDEQ 606
            LWEE+FDGHPDSKPDGPTSVGMDVYFP GSDHVYGIPEHA SM+LKTT    T     DGE   PP HFSEPYRLYTLDVFEYEL+S AALYG+IPVMLGHR G TAGVFWFNPTETFVDVEQG                GAGEGKRARWISEGGALDLVLLPGPTP  VF+QYAEVTGKPELPPMFSLGFHQCRWNYRDEQ
Sbjct:  289 LWEESFDGHPDSKPDGPTSVGMDVYFP-GSDHVYGIPEHAASMSLKTTTXXTTP----DGEIAAPP-HFSEPYRLYTLDVFEYELDSSAALYGAIPVMLGHRRGQTAGVFWFNPTETFVDVEQG----------------GAGEGKRARWISEGGALDLVLLPGPTPGAVFKQYAEVTGKPELPPMFSLGFHQCRWNYRDEQ 468
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11483.1308.1 vs. uniprot
Match: A0A7S2STM5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STM5_9STRA)

HSP 1 Score: 223 bits (567), Expect = 3.980e-64
Identity = 103/202 (50.99%), Postives = 133/202 (65.84%), Query Frame = 1 
Query:    1 LWEETFDGHPDSKPDGPTSVGMDVYFPAGSDHVYGIPEHATSMALKTTASAGTEAEGADGETQPPPPHFSEPYRLYTLDVFEYELNSPAALYGSIPVMLGHRAGATAGVFWFNPTETFVDVEQGKGRTSRVCLCVCLFVCGAGEGKRARWISEGGALDLVLLPGPTPRQVFQQYAEVTGKPELPPMFSLGFHQCRWNYRDEQ 606
             W+ETF GH DSKP GP SVGMD+ FP G+ H++GIPEHAT ++L+ T                P  H+S+PYR+YTLDVFEY+L+ P ALYG IP+++GH A A+ G FWFNPTETF+DVE+                   G+  R  WISE G +DL+LLPGPTP+ +  Q+    G  ELPP+F+LG+HQCRWNY+DE+
Sbjct:  264 FWQETFAGHTDSKPLGPASVGMDIDFP-GAQHLFGIPEHATRLSLQPTTG--------------PNAHYSDPYRMYTLDVFEYDLDVPMALYGGIPMVMGHTASASVGAFWFNPTETFIDVEKD------------------GKASRTHWISESGIVDLMLLPGPTPKDILHQFTSAVGTQELPPLFALGYHQCRWNYKDEK 432
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BLAST of mRNA_H-canaliculatus_F_contig11483.1308.1 vs. uniprot
Match: A0A7S2FWR3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FWR3_9STRA)

HSP 1 Score: 220 bits (561), Expect = 2.350e-63
Identity = 105/201 (52.24%), Postives = 130/201 (64.68%), Query Frame = 1 
Query:    1 LWEETFDGHPDSKPDGPTSVGMDVYFPAGSDHVYGIPEHATSMALKTTASAGTEAEGADGETQPPPPHFSEPYRLYTLDVFEYELNSPAALYGSIPVMLGHRAGATAGVFWFNPTETFVDVEQGKGRTSRVCLCVCLFVCGAGEGKRARWISEGGALDLVLLPGPTPRQVFQQYAEVTGKPELPPMFSLGFHQCRWNYRDE 603
             WEE+F GH DSKP GP SVG+DV FP GS H+YGIPEHA+SMALK T   G +              +S+PYRLYTLDVFEY+L+ P ALYG IP++  H    T G FWFNPTETF+D+E+                    +  R+RWISE G +DL+L+PGPTP     Q+ ++ G  +LPPMFSLG+HQCRWNY+DE
Sbjct:  247 FWEESFGGHTDSKPLGPASVGIDVDFP-GSKHLYGIPEHASSMALKATTGPGAD--------------YSDPYRLYTLDVFEYDLDVPMALYGGIPLVWSHTTRGTVGAFWFNPTETFIDIEKDD------------------KSARSRWISESGIVDLMLIPGPTPADAISQFTQLVGTTDLPPMFSLGYHQCRWNYKDE 414
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BLAST of mRNA_H-canaliculatus_F_contig11483.1308.1 vs. uniprot
Match: A0A7S0FTU8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FTU8_9STRA)

HSP 1 Score: 213 bits (543), Expect = 1.580e-62
Identity = 109/207 (52.66%), Postives = 134/207 (64.73%), Query Frame = 1 
Query:    1 LWEETFDGHPDSKPDGPTSVGMDVYFPAGSDHVYGIPEHATSMALKTTASAGTEAEGADGETQPPPPHFSEPYRLYTLDVFEYELNSPAALYGSIPVMLGHR-AGATAGVFWFNPTETFVDV-----EQGKGRTSRVCLCVCLFVCGAGEGKRARWISEGGALDLVLLPGPTPRQVFQQYAEVTGKPELPPMFSLGFHQCRWNYRDE 603
            LWEE+F GH DSKP GP SVGMD+ FP GS H++G+PEHA+S  L+TT        G D +       + +PYRLY LDVFEYEL+   ALYG IPV++    +G TAG+FWFNPTETFVDV     + G G T             AG G    ++SE G +DL LLPGP P  +++QY  +TG+  LPPMFSLG+HQCRWNYRDE
Sbjct:  127 LWEESFGGHTDSKPYGPMSVGMDIKFP-GSSHLFGLPEHASSTVLQTT-------HGTDSK-------YHDPYRLYNLDVFEYELDETMALYGEIPVIISQSLSGGTAGIFWFNPTETFVDVYGPNDDGGIGDT-------------AGHGTTTHFMSESGVMDLFLLPGPDPHSLYEQYGRLTGRVSLPPMFSLGYHQCRWNYRDE 305
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11483.1308.1 vs. uniprot
Match: A0A1Z5JSS4_FISSO (Alpha 1,3-glucosidase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSS4_FISSO)

HSP 1 Score: 215 bits (548), Expect = 2.020e-62
Identity = 107/203 (52.71%), Postives = 126/203 (62.07%), Query Frame = 1 
Query:    1 LWEETFDGHPDSKPDGPTSVGMDVYFPAGSDHVYGIPEHATSMALKTTASAGTEAEGADGETQPPPPHFSEPYRLYTLDVFEYELNSPAALYGSIPVMLGH-RAGATAGVFWFNPTETFVDVEQGKGRTSRVCLCVCLFVCGAGEGKRARWISEGGALDLVLLPGPTPRQVFQQYAEVTGKPELPPMFSLGFHQCRWNYRDEQ 606
            LWEETF  H DSKP GP SVGMD+ FP GS H+YGIPEHA+S  LK T   G+              H+ EPYRLY LDVFEYEL+   ALYG+IP ML   +   + GVFWFNP+ETFVD+                          A WISE G +DL LLPGP P  ++QQYA++TG   LPPMFSLG+HQCRWNY+DE+
Sbjct:  306 LWEETFSSHKDSKPFGPMSVGMDISFP-GSKHLYGIPEHASSAVLKATRGEGS--------------HYKEPYRLYNLDVFEYELDETMALYGAIPFMLSQSKTAGSVGVFWFNPSETFVDITS------------------TDSSSTAHWISESGVIDLFLLPGPDPSSIYQQYAKLTGTTPLPPMFSLGYHQCRWNYKDEK 475
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BLAST of mRNA_H-canaliculatus_F_contig11483.1308.1 vs. uniprot
Match: A0A5A8DPS0_CAFRO (Gal_mutarotas_2 domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DPS0_CAFRO)

HSP 1 Score: 217 bits (552), Expect = 4.990e-62
Identity = 109/201 (54.23%), Postives = 134/201 (66.67%), Query Frame = 1 
Query:    1 LWEETFDGHPDSKPDGPTSVGMDVYFPAGSDHVYGIPEHATSMALKTTASAGTEAEGADGETQPPPPHFSEPYRLYTLDVFEYELNSPAALYGSIPVMLGHRAGATAGVFWFNPTETFVDVEQGKGRTSRVCLCVCLFVCGAGEGKRARWISEGGALDLVLLPGPTPRQVFQQYAEVTGKPELPPMFSLGFHQCRWNYRDE 603
            +  E+F GH D++P GPTSVG+D  FP GS HVYGIPEHA ++AL+ TA   +EA GA           SEPYRLY LDVFEYEL++P ALYGSIPVM+ H  G TAGVFW NP+ETFVDV +                  A  G  ARW+SE G  DL ++PGP+ R+VF+QY  +TG   +PP F+LG+HQCRWNY+DE
Sbjct:  264 MGAESFGGHTDNRPHGPTSVGVDTAFP-GSTHVYGIPEHADTLALRATAPGSSEA-GAH----------SEPYRLYNLDVFEYELHNPMALYGSIPVMIAHGQGRTAGVFWNNPSETFVDVAK------------------ASPGASARWMSESGVFDLTVMPGPSAREVFRQYTAMTGTQAMPPRFALGYHQCRWNYKDE 434
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BLAST of mRNA_H-canaliculatus_F_contig11483.1308.1 vs. uniprot
Match: A0A4D9D2P9_9STRA (Gal_mutarotas_2 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2P9_9STRA)

HSP 1 Score: 217 bits (552), Expect = 6.030e-62
Identity = 109/201 (54.23%), Postives = 133/201 (66.17%), Query Frame = 1 
Query:    4 WEETFDGHPDSKPDGPTSVGMDVYFPAGSDHVYGIPEHATSMALKTTASAGTEAEGADGETQPPPPHFSEPYRLYTLDVFEYELNSPAALYGSIPVMLGHRAGATAGVFWFNPTETFVDVEQGKGRTSRVCLCVCLFVCGAGEGKRARWISEGGALDLVLLPGPTPRQVFQQYAEVTGKPELPPMFSLGFHQCRWNYRDEQ 606
            WEE F GH DS+P GP SVG+DV FP G++H+YG+PEHA+S  LKTT   G  A+            ++EP+RLY LDVFEYEL+ P ALYGSIP +  H A  +AGVF FNP+ETFVDVE G G                G+G +  W+SE G LDL LLPGPTPR V +Q   +TG   LPP+FSLG+HQCRWNY+DE+
Sbjct:  291 WEEYFGGHTDSRPHGPASVGIDVRFP-GAEHLYGLPEHASSFRLKTTK--GPNAQ------------YAEPFRLYNLDVFEYELDEPMALYGSIPFVASHTAALSAGVFLFNPSETFVDVEAGSGH---------------GDGYQTHWMSECGVLDLFLLPGPTPRAVAKQMTTLTGTQALPPLFSLGYHQCRWNYKDEK 461
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BLAST of mRNA_H-canaliculatus_F_contig11483.1308.1 vs. uniprot
Match: A0A812QL50_9DINO (Ganab protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812QL50_9DINO)

HSP 1 Score: 217 bits (552), Expect = 1.210e-61
Identity = 109/201 (54.23%), Postives = 134/201 (66.67%), Query Frame = 1 
Query:    1 LWEETFDGHPDSKPDGPTSVGMDVYFPAGSDHVYGIPEHATSMALKTTASAGTEAEGADGETQPPPPHFSEPYRLYTLDVFEYELNSPAALYGSIPVMLGHRAGATAGVFWFNPTETFVDVEQGKGRTSRVCLCVCLFVCGAGEGKRARWISEGGALDLVLLPGPTPRQVFQQYAEVTGKPELPPMFSLGFHQCRWNYRDE 603
            +  E+F GH D++P GPTSVG+D  FP GS HVYGIPEHA ++AL+ TA   +EA GA           SEPYRLY LDVFEYEL++P ALYGSIPVM+ H  G TAGVFW NP+ETFVDV +                  A  G  ARW+SE G  DL ++PGP+ R+VF+QY  +TG   +PP F+LG+HQCRWNY+DE
Sbjct:  196 MGAESFGGHTDNRPHGPTSVGVDTAFP-GSTHVYGIPEHADTLALRATAPGSSEA-GAH----------SEPYRLYNLDVFEYELHNPMALYGSIPVMIAHGQGRTAGVFWNNPSETFVDVAK------------------ASPGASARWMSESGVFDLTVMPGPSAREVFRQYTAMTGTQAMPPRFALGYHQCRWNYKDE 366
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11483.1308.1 vs. uniprot
Match: A0A7S1D5H9_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D5H9_CYCTE)

HSP 1 Score: 213 bits (542), Expect = 1.790e-61
Identity = 105/202 (51.98%), Postives = 131/202 (64.85%), Query Frame = 1 
Query:    1 LWEETFDGHPDSKPDGPTSVGMDVYFPAGSDHVYGIPEHATSMALKTTASAGTEAEGADGETQPPPPHFSEPYRLYTLDVFEYELNSPAALYGSIPVMLGHRAGA-TAGVFWFNPTETFVDVEQGKGRTSRVCLCVCLFVCGAGEGKRARWISEGGALDLVLLPGPTPRQVFQQYAEVTGKPELPPMFSLGFHQCRWNYRDE 603
            +WEE F  H DSKP GP SVGMD+ FP  S H+YG+PEHA+S  L+     GT+ +GA         HFSEPYRLY LDVFEYEL+   ALYG +P+++ H     T+GVFWFNPTETFVDV                     GE K   W+SE G +D+  +PGP+P ++++QYA +TGK  LPPMFSLG+HQCRWNY+DE
Sbjct:   45 MWEEKFSSHHDSKPYGPMSVGMDITFP-NSKHIYGLPEHASSTILQ-----GTQGDGA---------HFSEPYRLYNLDVFEYELDETMALYGEVPLVVSHSVKTGTSGVFWFNPTETFVDVMD------------------EGESKSTHWMSESGIVDIFFMPGPSPSELYEQYALLTGKLALPPMFSLGYHQCRWNYKDE 213
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11483.1308.1 vs. uniprot
Match: A0A835Z3X1_9STRA (Alpha-glucosidase II n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3X1_9STRA)

HSP 1 Score: 214 bits (544), Expect = 3.460e-61
Identity = 108/201 (53.73%), Postives = 128/201 (63.68%), Query Frame = 1 
Query:    1 LWEETFDGHPDSKPDGPTSVGMDVYFPAGSDHVYGIPEHATSMALKTTASAGTEAEGADGETQPPPPHFSEPYRLYTLDVFEYELNSPAALYGSIPVMLGHRAGATAGVFWFNPTETFVDVEQGKGRTSRVCLCVCLFVCGAGEGKRARWISEGGALDLVLLPGPTPRQVFQQYAEVTGKPELPPMFSLGFHQCRWNYRDE 603
            L EE FDGH D+KP G TSVGMDV+FP GS  +YGIPEHA SMALK T   G                +S+PYRLYTLDVFEYEL+ P ALYG+IP+ + H AG TA  FW+NP+ETFVD                        GK  RW+SE G +DL++LPGPTP  +F+QY  +TG P +PP FS+ FHQCRWNYRDE
Sbjct:  176 LGEERFDGHVDTKPFGATSVGMDVWFP-GSQELYGIPEHAASMALKATTGDGAS--------------YSDPYRLYTLDVFEYELDVPMALYGAIPLAVSHGAGGTAAAFWWNPSETFVD-----------------------GGKGVRWLSESGVVDLMILPGPTPADMFKQYMLLTGAPAMPPHFSVAFHQCRWNYRDE 338
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11483.1308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLR8_9PHAE2.450e-10379.70Gal_mutarotas_2 domain-containing protein (Fragmen... [more]
A0A7S2STM5_9STRA3.980e-6450.99Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S2FWR3_9STRA2.350e-6352.24Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0FTU8_9STRA1.580e-6252.66Hypothetical protein (Fragment) n=2 Tax=Minutocell... [more]
A0A1Z5JSS4_FISSO2.020e-6252.71Alpha 1,3-glucosidase n=2 Tax=Fistulifera solaris ... [more]
A0A5A8DPS0_CAFRO4.990e-6254.23Gal_mutarotas_2 domain-containing protein n=2 Tax=... [more]
A0A4D9D2P9_9STRA6.030e-6254.23Gal_mutarotas_2 domain-containing protein n=2 Tax=... [more]
A0A812QL50_9DINO1.210e-6154.23Ganab protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A7S1D5H9_CYCTE1.790e-6151.98Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A835Z3X1_9STRA3.460e-6153.73Alpha-glucosidase II n=1 Tax=Tribonema minus TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11483contigH-canaliculatus_F_contig11483:292..1857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score205.7
Seed ortholog evalue2.1e-50
Seed eggNOG ortholog7739.XP_002590875.1
KEGG koko:K05546
KEGG ReactionR05980,R05981
KEGG Pathwayko00510,ko01100,ko04141,map00510,map01100,map04141
KEGG ModuleM00073,M00074
GOsGO:0000272,GO:0000323,GO:0003674,GO:0003824,GO:0004553,GO:0004558,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0009987,GO:0015926,GO:0015980,GO:0016052,GO:0016787,GO:0016798,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0071704,GO:0090599,GO:1901575
EggNOG free text desc.alpha-1,3-glucosidase activity
EggNOG OGs3AJSB@33154,3BDJ3@33208,3CRKP@33213,4800W@7711,COG1501@1,KOG1066@2759
EC3.2.1.84
COG Functional cat.G
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size606
Cds size606
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11483.1308.1prot_H-canaliculatus_F_contig11483.1308.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11483 292..1857 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928834.823815-CDS-H-canaliculatus_F_contig11483:291..4791622928834.823815-CDS-H-canaliculatus_F_contig11483:291..479Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11483 292..479 -
1696845582.4779532-CDS-H-canaliculatus_F_contig11483:291..4791696845582.4779532-CDS-H-canaliculatus_F_contig11483:291..479Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11483 292..479 -
1622928834.8390749-CDS-H-canaliculatus_F_contig11483:783..11191622928834.8390749-CDS-H-canaliculatus_F_contig11483:783..1119Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11483 784..1119 -
1696845582.4924793-CDS-H-canaliculatus_F_contig11483:783..11191696845582.4924793-CDS-H-canaliculatus_F_contig11483:783..1119Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11483 784..1119 -
1622928834.850545-CDS-H-canaliculatus_F_contig11483:1775..18571622928834.850545-CDS-H-canaliculatus_F_contig11483:1775..1857Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11483 1776..1857 -
1696845582.5039985-CDS-H-canaliculatus_F_contig11483:1775..18571696845582.5039985-CDS-H-canaliculatus_F_contig11483:1775..1857Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11483 1776..1857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11483.1308.1

>prot_H-canaliculatus_F_contig11483.1308.1 ID=prot_H-canaliculatus_F_contig11483.1308.1|Name=mRNA_H-canaliculatus_F_contig11483.1308.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=202bp
LWEETFDGHPDSKPDGPTSVGMDVYFPAGSDHVYGIPEHATSMALKTTAS
AGTEAEGADGETQPPPPHFSEPYRLYTLDVFEYELNSPAALYGSIPVMLG
HRAGATAGVFWFNPTETFVDVEQGKGRTSRVCLCVCLFVCGAGEGKRARW
ISEGGALDLVLLPGPTPRQVFQQYAEVTGKPELPPMFSLGFHQCRWNYRD
EQ
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mRNA from alignment at H-canaliculatus_F_contig11483:292..1857-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11483.1308.1 ID=mRNA_H-canaliculatus_F_contig11483.1308.1|Name=mRNA_H-canaliculatus_F_contig11483.1308.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1566bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11483:292..1857- (Hapterophycus canaliculatus Oshoro5f female)
CTCTGGGAGGAGACCTTCGACGGCCACCCCGATAGCAAGCCCGACGGCCC
TACCAGCGTGGGGATGGACGTATACTTCCCAGGTAAGGAGGCCAAGGCGG
CGATGAGGGGTTTGGGGGGCCGAGGGGAGAGTGAAGGGTAGGTGTTCGCC
TCGATGCGTTTTTCGTGAAGGAGGCGTGCCGGCGCCGGGTACGCGTCGCT
TGGAGGAGGGAAGGTTGTTGGGGGGGAGGTGTGATCGAGTTTCGCGGACG
TGTTTGTAGTCAGGCGTTTTCCGAGGGTGATGCGTGCCGCCGTGTGTTTT
GTCGTTTTGTCGTGGGTGTGTTCGTTGCTTGCCTTTTGTGGGTAAGGATG
TCTCTGGGGAAGCGGGTGTTCGTGGCTTTGAACGGCGTTTTTTTCGGTGG
GTCGACCGAACGTACAGTATCTTCGATATTATTCGGCACTCATCGCTCAC
TCGCTCCACTCACTCTCTTCATTCCTCGAGGGGGTGTGATGACGATGACG
ATCATGGCCGGAACTTAAAGCGAACCACCTCAAAACCCGACGGAGGGGGT
TTGGTCACGCCGCTCGAAAGCCGGTGCCGAACTCTCGAGGCACAAAAACC
CACGCGCACGATCACTCACGCACGGACGCGCACAAGCATGGTGCGTGTGC
CAACAGCTCTACCGGGTCGAAGCACAAATCTAAGGGTCGGGAGTCATGCT
TCTACGCGCCGCCCCGCGCCTGATCTTCGCCGCACGAGCAGGGTCCGACC
ACGTCTACGGCATCCCGGAGCACGCGACCTCCATGGCCCTTAAGACCACA
GCATCTGCGGGAACGGAGGCAGAGGGGGCAGACGGCGAGACTCAACCGCC
GCCGCCGCACTTCTCCGAGCCGTACCGGCTGTATACCCTGGATGTGTTCG
AGTACGAGCTGAACTCGCCGGCGGCGCTGTACGGCAGCATCCCCGTGATG
CTGGGGCACAGAGCGGGGGCGACGGCGGGGGTGTTTTGGTTCAACCCCAC
GGAGACGTTCGTCGACGTCGAGCAAGGCAAGGGACGAACGAGTCGGGTCT
GTTTGTGTGTTTGTTTGTTTGTTTGTGTCATTGTTTTTCTTTAACGGCGC
TTGGGCTTTTCGAGCTGGAGTTCGAGCCCCGCGCGTTGGGCCTCCTGCGG
TGGGGTTTCCATCCTCCGTCGGCCTGGGTGGATTCATTTCCGTGAGGTTT
TTTCGTCTTTAAGGGGAAGGGTCTTGCTCCGGGGGGTCTGCAGACGCGGT
CGCAAGCATTCGTGTAGTGATCGTCGGGCTGTCCAAGAACCGCCGTCACA
ACACAATGAACATCACCACCACCACCACCAATAACGACGACGACGACGAC
GACGACGACGACCACAACAACAACATAGGCGGTGCCGGAGAAGGAAAGCG
CGCGCGCTGGATCAGCGAGGGGGGTGCACTGGACCTCGTCCTCCTTCCGG
GCCCCACGCCTCGCCAGGTGTTCCAGCAGTACGCCGAGGTCACCGGCAAG
CCGGAGCTGCCCCCCATGTTCAGCCTGGGCTTCCACCAGTGCCGCTGGAA
CTATCGAGACGAGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11483:292..1857-

>mRNA_H-canaliculatus_F_contig11483.1308.1 ID=mRNA_H-canaliculatus_F_contig11483.1308.1|Name=mRNA_H-canaliculatus_F_contig11483.1308.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1212bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11483:292..1857- (Hapterophycus canaliculatus Oshoro5f female)
CTCTGGGAGGAGACCTTCGACGGCCACCCCGATAGCAAGCCCGACGGCCC
TACCAGCGTGGGGATGGACGTATACTTCCCAGCTCTGGGAGGAGACCTTC
GACGGCCACCCCGATAGCAAGCCCGACGGCCCTACCAGCGTGGGGATGGA
CGTATACTTCCCAGCAGGGTCCGACCACGTCTACGGCATCCCGGAGCACG
CGACCTCCATGGCCCTTAAGACCACAGCATCTGCGGGAACGGAGGCAGAG
GGGGCAGACGGCGAGACTCAACCGCCGCCGCCGCACTTCTCCGAGCCGTA
CCGGCTGTATACCCTGGATGTGTTCGAGTACGAGCTGAACTCGCCGGCGG
CGCTGTACGGCAGCATCCCCGTGATGCTGGGGCACAGAGCGGGGGCGACG
GCGGGGGTGTTTTGGTTCAACCCCACGGAGACGTTCGTCGACGTCGAGCA
AGGCAAGGGACGAACGAGTCGGGTCTGTTTGTGTGTTTGTTTGTTTGTTT
CAGGGTCCGACCACGTCTACGGCATCCCGGAGCACGCGACCTCCATGGCC
CTTAAGACCACAGCATCTGCGGGAACGGAGGCAGAGGGGGCAGACGGCGA
GACTCAACCGCCGCCGCCGCACTTCTCCGAGCCGTACCGGCTGTATACCC
TGGATGTGTTCGAGTACGAGCTGAACTCGCCGGCGGCGCTGTACGGCAGC
ATCCCCGTGATGCTGGGGCACAGAGCGGGGGCGACGGCGGGGGTGTTTTG
GTTCAACCCCACGGAGACGTTCGTCGACGTCGAGCAAGGCAAGGGACGAA
CGAGTCGGGTCTGTTTGTGTGTTTGTTTGTTTGTTTGCGGTGCCGGAGAA
GGAAAGCGCGCGCGCTGGATCAGCGAGGGGGGTGCACTGGACCTCGTCCT
CCTTCCGGGCCCCACGCCTCGCCAGGTGTTCCAGCAGTACGCCGAGGTCA
CCGGCAAGCCGGAGCTGCCCCCCATGTTCAGCCTGGGCTTCCACCAGTGC
CGCTGGAACTATCGAGACGAGCAGGCGGTGCCGGAGAAGGAAAGCGCGCG
CGCTGGATCAGCGAGGGGGGTGCACTGGACCTCGTCCTCCTTCCGGGCCC
CACGCCTCGCCAGGTGTTCCAGCAGTACGCCGAGGTCACCGGCAAGCCGG
AGCTGCCCCCCATGTTCAGCCTGGGCTTCCACCAGTGCCGCTGGAACTAT
CGAGACGAGCAG
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