prot_H-canaliculatus_F_contig1148.1299.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-canaliculatus_F_contig1148.1299.1
Unique Name	prot_H-canaliculatus_F_contig1148.1299.1
Type	polypeptide
Organism	Hapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length	117

Homology

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BLAST of mRNA_H-canaliculatus_F_contig1148.1299.1 vs. uniprot
Match: D8LB29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB29_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 4.410e-50
Identity = 94/109 (86.24%), Postives = 99/109 (90.83%), Query Frame = 0

Query:    8 AAGRPKQGVVAELTLAKSGQSTPLTAISLSSDQRVGVVGGHGIMKVIRLAPEGLSEVATLKAGRRKGPGSAGSKLSMYDVAWCPTGGHVAASLSNGGVAIWDLQHLPSS 116
            A G P +GVVAELTLAKSGQSTPLTAISLSSDQR+  VGGHGIMKVIRLAPEGLSEVATLK GRRK  GSAGSKLSMYDVAW P+GG+VAASLSNGGVA+WDLQHL SS
Sbjct:    7 APGTPNRGVVAELTLAKSGQSTPLTAISLSSDQRLAAVGGHGIMKVIRLAPEGLSEVATLKTGRRKITGSAGSKLSMYDVAWRPSGGNVAASLSNGGVAMWDLQHLSSS 115

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_F_contig1148.1299.1 vs. uniprot

BLAST of mRNA_H-canaliculatus_F_contig1148.1299.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LB29_ECTSI	4.410e-50	86.24	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 11..116 e-value: 7.6E-8 score: 34.1
IPR037590	GATOR complex protein WDR24	PANTHER	PTHR46200	FAMILY NOT NAMED	coord: 26..112
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 96..110
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 25..111

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_F_contig1148	contig	H-canaliculatus_F_contig1148:873..3736 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90	2022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_F_contig1148.1299.1	mRNA_H-canaliculatus_F_contig1148.1299.1	Hapterophycus canaliculatus Oshoro5f female	mRNA	H-canaliculatus_F_contig1148 873..3831 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-canaliculatus_F_contig1148.1299.1 ID=prot_H-canaliculatus_F_contig1148.1299.1|Name=mRNA_H-canaliculatus_F_contig1148.1299.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=117bp
MATSAGAAAGRPKQGVVAELTLAKSGQSTPLTAISLSSDQRVGVVGGHGI
MKVIRLAPEGLSEVATLKAGRRKGPGSAGSKLSMYDVAWCPTGGHVAASL
SNGGVAIWDLQHLPSST

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036322	WD40_repeat_dom_sf
IPR019775	WD40_repeat_CS
IPR037590	WDR24
IPR015943	WD40/YVTN_repeat-like_dom_sf