mRNA_H-canaliculatus_F_contig101.128.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig101.128.1
Unique NamemRNA_H-canaliculatus_F_contig101.128.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig101.128.1 vs. uniprot
Match: A0A6H5JLK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLK5_9PHAE)

HSP 1 Score: 340 bits (873), Expect = 2.360e-105
Identity = 231/491 (47.05%), Postives = 270/491 (54.99%), Query Frame = 3 
Query:  207 MSAFQTFAAPPGRHQHQHWQQVSPFSSPTLVGSAASLSCPRRDHLRRRRHLGSCCRQSGAHGAIHPLTFGAKYGREGRSAI--------EGHPSLLGCLASPTSTPEESSGAAPGSAGTS--GSEETAESGGSAA------VGSDARRLGGPTEPGTEGVRGRPVPGWDVGYEATGPLDGRVSDRSRGGXXXXXXXXXXXXXXXXXXXXGGPTQGRLRLKWGFDLDVPVPSELEALVKGPWDPQGDVWARQLDIAAQVIERSGGVVFMEQLAPVLNPREGPPQWFRENVVASGGGY-------------GGFADKSKEPTGLDNTAQTLED--------------------YETDQLNAEGVKGFSTTPEVLQFEEVPKLLKALPKMMPDQGPKVVRDFFQRTALSGLALFLSMWLLLGQLIFHSSPTWLFTGPAYLVWVGLDDTLRRSRDTSARQRDRWRGQWADVCRGDGEAMWRKRAAARSRARRLRD 1532
            MSA + F + P   QH  W    P  SP +   A ++       +   R   SCCR+SG  G    L  G  +  E RSA         E +  L   LAS  +       A+ G+ GT+  G    A SG   A      VGS  R  G   E GT    GRP  G D   +   P     S RSR                           GRLRLKWG DLD+PVP  LEALVKGPWDPQGD+W RQLD+AAQVI RSGGVVFMEQLAP+LNPREGP +W+R    A G  Y             GG A   +    L+ + +   D                     E D  + E   G +  PEVLQFEEVP+LL++LPKM+PDQGPKVV++FFQRTALSGLALFLSM L+LGQLIF+S P WL TGPAYLVWVGLDDTLRRSR+ SA+QRD+WR QWADVCRGDG+A+WRKRAAAR  ARRL D
Sbjct:    1 MSALEAFVSWPV--QHHRWLPYRPLPSPAISALATNVGGDNGAAVGLSRRT-SCCRESGGRGTDQVL-LGLWFSDENRSASFWRKRRRQEPYGRLWLPLASSATXXXXXXXASIGNDGTAAKGDGAPASSGNEVASDESRPVGSGGRMAGDMFEFGTNRRTGRPALGRDEANKTARPSKDESSGRSR---------------------RKSSAPGRLRLKWGVDLDIPVPVALEALVKGPWDPQGDMWERQLDMAAQVISRSGGVVFMEQLAPILNPREGPREWYRVCADAGGDFYEKGDKSGISVDAVGGEALVLRVLLDLNGSPEVTSDGDILYVFPGFARGKRGREGNIEADYRSEESETGSTAAPEVLQFEEVPRLLESLPKMIPDQGPKVVKEFFQRTALSGLALFLSMCLVLGQLIFNSWPIWLATGPAYLVWVGLDDTLRRSRNRSAKQRDQWREQWADVCRGDGDAIWRKRAAARVMARRLDD 466
[Close]
BLAST of mRNA_H-canaliculatus_F_contig101.128.1 vs. uniprot
Match: A0A6H5K1U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1U7_9PHAE)

HSP 1 Score: 268 bits (686), Expect = 2.140e-80
Identity = 157/284 (55.28%), Postives = 176/284 (61.97%), Query Frame = 3 
Query:  837 VPVPSELEALVKGPWDPQGDVWARQLDIAAQVIERSGGVVFMEQLAPVLNPREGPPQWFRENVVASGG----GYG-------------------------------------------GFADKSK--EPTGLDNTAQTLEDYETDQLNAEGV-KGFSTTPEVLQFEEVPKLLKALPKMMPDQGPKVVRDFFQRTALSGLALFLSMWLLLGQLIFHSSPTWLFTGPAYLVWVGLDDTLRRSRDTSARQRDRWRGQWADVCRGDGEAMWRKRAAARSRARRLRDEG 1538
            + VP  LE LV+GPWDPQ D W RQLD+AAQV++RSGGVVFMEQLAPVLNPREGPP+W+RE+    GG    GYG                                           GFA K +  E       A TLE +E +Q    G  K F+ TPEVLQFEEVP LL  LPKM PDQGPK       RTALSGLALFLS  L+L QLIF S P WL  GPAYL WV LDD+LRRSR  SA+QRD WRGQWADVCRGDG+ +WRKR AAR RAR+LR +G
Sbjct:    8 IHVPLALEELVRGPWDPQRDTWRRQLDMAAQVVQRSGGVVFMEQLAPVLNPREGPPEWYRESATGGGGRGAAGYGKNGATDGISIEAVGGEALVLRLLFELNGAPEVTDDGDILYVFPGFAAKGEACEGRAAAGEAPTLEAFEAEQRGGGGEEKEFTATPEVLQFEEVPGLLDVLPKM-PDQGPK-------RTALSGLALFLSTCLVLEQLIFRSWPAWLAAGPAYLAWVALDDSLRRSRGKSAKQRDVWRGQWADVCRGDGDPVWRKRVAARLRARKLRGDG 283
[Close]
BLAST of mRNA_H-canaliculatus_F_contig101.128.1 vs. uniprot
Match: D7FXE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE6_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 3.760e-66
Identity = 145/292 (49.66%), Postives = 167/292 (57.19%), Query Frame = 3 
Query:  582 VGSDARRLGGPTEPGTEGVRGRPVPGWDVGYEATGPLDGRVSDRSRGGXXXXXXXXXXXXXXXXXXXXGGPTQGRLRLKWGFDLDVPVPSELEALVKGPWDPQGDVWARQLDIAAQVIERSGGVVFMEQLAPVLNPREGPPQWFRENVVASGGGY--GGFADKSKEPTG-----------LDNTAQTLED--------------------YETDQLNAEGVKGFSTTPEVLQFEEVPKLLKALPKMMPDQGPKVVRDFFQRTALSGLALFLSMWLLLGQLIFHSSPTWLFTG 1358
            VGS  R  G   E GT    GRP  G D  Y+         S RSR                           GRLRLKWG DLD+PVP  LEALVKGPWDPQGD+W RQLD+AAQVI RSGGVVFMEQLAP+LNPREGPP+W+R    A GG Y  G  +D S +  G           L+ + +   D                     E D  + E   G +  PEVLQFEEVP+LL+ALPK++PDQGPKVV++ FQRTALSGLALFLSM L+LGQLIF+S P WL TG
Sbjct:  101 VGSGGRVAGDMFEFGTNRRTGRPALGRDEAYKTARSPKDESSGRSR---------------------RRSSAPGRLRLKWGVDLDIPVPVALEALVKGPWDPQGDMWKRQLDMAAQVISRSGGVVFMEQLAPILNPREGPPEWYRVCADAGGGFYEKGDKSDISVDAVGGEALVLRVLLDLNGSPEVTSDGDILYVFPGFARGKRGREGSIEADYHSEESETGSTAAPEVLQFEEVPRLLEALPKIIPDQGPKVVKELFQRTALSGLALFLSMCLVLGQLIFNSWPIWLATG 371
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig101.128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JLK5_9PHAE2.360e-10547.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1U7_9PHAE2.140e-8055.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXE6_ECTSI3.760e-6649.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig101contigH-canaliculatus_F_contig101:23268..31249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_002920.1
Exons9
Model size2367
Cds size1377
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928637.979771-UTR-H-canaliculatus_F_contig101:23267..240901622928637.979771-UTR-H-canaliculatus_F_contig101:23267..24090Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig101 23268..24090 -
1696845507.128706-UTR-H-canaliculatus_F_contig101:23267..240901696845507.128706-UTR-H-canaliculatus_F_contig101:23267..24090Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig101 23268..24090 -
1622928638.1342382-UTR-H-canaliculatus_F_contig101:30072..301961622928638.1342382-UTR-H-canaliculatus_F_contig101:30072..30196Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig101 30073..30196 -
1696845507.2175214-UTR-H-canaliculatus_F_contig101:30072..301961696845507.2175214-UTR-H-canaliculatus_F_contig101:30072..30196Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig101 30073..30196 -
1622928638.1481898-UTR-H-canaliculatus_F_contig101:31206..312491622928638.1481898-UTR-H-canaliculatus_F_contig101:31206..31249Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig101 31207..31249 -
1696845507.2265446-UTR-H-canaliculatus_F_contig101:31206..312491696845507.2265446-UTR-H-canaliculatus_F_contig101:31206..31249Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig101 31207..31249 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928637.995439-CDS-H-canaliculatus_F_contig101:24090..242781622928637.995439-CDS-H-canaliculatus_F_contig101:24090..24278Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig101 24091..24278 -
1696845507.1383448-CDS-H-canaliculatus_F_contig101:24090..242781696845507.1383448-CDS-H-canaliculatus_F_contig101:24090..24278Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig101 24091..24278 -
1622928638.0081782-CDS-H-canaliculatus_F_contig101:24967..250821622928638.0081782-CDS-H-canaliculatus_F_contig101:24967..25082Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig101 24968..25082 -
1696845507.1478722-CDS-H-canaliculatus_F_contig101:24967..250821696845507.1478722-CDS-H-canaliculatus_F_contig101:24967..25082Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig101 24968..25082 -
1622928638.024076-CDS-H-canaliculatus_F_contig101:25664..257211622928638.024076-CDS-H-canaliculatus_F_contig101:25664..25721Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig101 25665..25721 -
1696845507.1563892-CDS-H-canaliculatus_F_contig101:25664..257211696845507.1563892-CDS-H-canaliculatus_F_contig101:25664..25721Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig101 25665..25721 -
1622928638.0437496-CDS-H-canaliculatus_F_contig101:26274..264081622928638.0437496-CDS-H-canaliculatus_F_contig101:26274..26408Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig101 26275..26408 -
1696845507.164812-CDS-H-canaliculatus_F_contig101:26274..264081696845507.164812-CDS-H-canaliculatus_F_contig101:26274..26408Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig101 26275..26408 -
1622928638.0615206-CDS-H-canaliculatus_F_contig101:27267..273881622928638.0615206-CDS-H-canaliculatus_F_contig101:27267..27388Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig101 27268..27388 -
1696845507.1761377-CDS-H-canaliculatus_F_contig101:27267..273881696845507.1761377-CDS-H-canaliculatus_F_contig101:27267..27388Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig101 27268..27388 -
1622928638.0789967-CDS-H-canaliculatus_F_contig101:28439..285261622928638.0789967-CDS-H-canaliculatus_F_contig101:28439..28526Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig101 28440..28526 -
1696845507.186508-CDS-H-canaliculatus_F_contig101:28439..285261696845507.186508-CDS-H-canaliculatus_F_contig101:28439..28526Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig101 28440..28526 -
1622928638.1070642-CDS-H-canaliculatus_F_contig101:29107..294951622928638.1070642-CDS-H-canaliculatus_F_contig101:29107..29495Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig101 29108..29495 -
1696845507.20015-CDS-H-canaliculatus_F_contig101:29107..294951696845507.20015-CDS-H-canaliculatus_F_contig101:29107..29495Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig101 29108..29495 -
1622928638.1199071-CDS-H-canaliculatus_F_contig101:29785..300721622928638.1199071-CDS-H-canaliculatus_F_contig101:29785..30072Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig101 29786..30072 -
1696845507.20875-CDS-H-canaliculatus_F_contig101:29785..300721696845507.20875-CDS-H-canaliculatus_F_contig101:29785..30072Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig101 29786..30072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig101.128.1prot_H-canaliculatus_F_contig101.128.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig101 24091..30072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig101.128.1

>prot_H-canaliculatus_F_contig101.128.1 ID=prot_H-canaliculatus_F_contig101.128.1|Name=mRNA_H-canaliculatus_F_contig101.128.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=459bp
MLVPSATPGPPWAMSAFQTFAAPPGRHQHQHWQQVSPFSSPTLVGSAASL
SCPRRDHLRRRRHLGSCCRQSGAHGAIHPLTFGAKYGREGRSAIEGHPSL
LGCLASPTSTPEESSGAAPGSAGTSGSEETAESGGSAAVGSDARRLGGPT
EPGTEGVRGRPVPGWDVGYEATGPLDGRVSDRSRGGGGGGGNGSGEGSSS
GRRRKEGGPTQGRLRLKWGFDLDVPVPSELEALVKGPWDPQGDVWARQLD
IAAQVIERSGGVVFMEQLAPVLNPREGPPQWFRENVVASGGGYGGFADKS
KEPTGLDNTAQTLEDYETDQLNAEGVKGFSTTPEVLQFEEVPKLLKALPK
MMPDQGPKVVRDFFQRTALSGLALFLSMWLLLGQLIFHSSPTWLFTGPAY
LVWVGLDDTLRRSRDTSARQRDRWRGQWADVCRGDGEAMWRKRAAARSRA
RRLRDEGV*
back to top

mRNA from alignment at H-canaliculatus_F_contig101:23268..31249-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig101.128.1 ID=mRNA_H-canaliculatus_F_contig101.128.1|Name=mRNA_H-canaliculatus_F_contig101.128.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=7982bp|location=Sequence derived from alignment at H-canaliculatus_F_contig101:23268..31249- (Hapterophycus canaliculatus Oshoro5f female)
CGCTTCAAACACTAGCTCACTGCTGTAACCCAGACGGAAAACGGTAAGCT
TGTGGGAACAATACCATAAAAAATTGCGTGTTCTTCTTTCTGCTCGCTGG
CTCATATGGTTACGTCTCGTGCGTGCCCACTGCAGTGCTGTCATCTCTTT
CATCTGTTGTCCACGTCCACCCTACTGTACAGTGGTAGAGCTCTCACACG
TCTTCTTTCATGTAAACTCTTTCGATCCACTACACTTGTAAACCTTTGTG
GTGTTTTCTACCACTACTGCTGTACACTTTTATGTGTATGTGCTGCACAG
CTAGACGTTTCAGCCGGGGTCACACAGCAGTTGAGGGCAAGCACGTGTGC
CGCACGAAATACCACCTTGAACTACTCGTCTGGATTCAGCAGGTACCGGT
ACACCAGGATCCTGCTACCTTGCCTCCGCCATACCGCCGTGCCTGTAGTT
GGAAGCTGTATCTTGCAAGTGTATACGACAGATAGAATTCCCCCTTCCTG
TGCTCGATGACACCCGTACTTTCGCATACACGTAAGGCAGGACCATGACG
GTAGAACACGCCATTCCTTTCATGCTCGTGTATGGTTAGTCGCCAATTTC
ATCCGAGGCAGTCTACGTGTGACTCCTTGCCGAAGGTTTGGCCGTTTCTT
GAAGAATGTTCAAGTCTGAGGCAGTGTGACCCTCGCCCCAATGTTTGTGT
GGCAAACAAGATCCCTCTGGCTTTGAGGGGGATACTCATAGTAACAACGA
GCCATCAGACACGTGTTTGTCTCTTGTTGGGATTGTTCCCTCGTGTTGTA
GGTCTGGAAGGGCAGGTAGACTATCCTGTCGATCCAGCGTTCGTTGTAAA
ATGAGCCATTCTAAGAACGATTGGAACGATCTGTTGGGTCTTGGGGACAA
ACCAACGCGAAAGAAAGAACGCCCTTGCATTGAATTCTTCTGCAAGGTAG
GATTGCGTGAAGTTGGCAGGGACAAAAAAAATATCATTACAAGAGGTAGA
GGATTCTAACAAGATATCCCCCGTTTTTCTCAACTCATCCTTGGAGTTCG
CAGGCATGCGCTCTGCTGGGTGAGACATCTTCCGACAGGCCAATTCCAAC
AGCTTTGTTGCTGTCGGCGACCGCTAACAACAAGGCACCAAAACTGCGGT
CTACAAAGGAAATTAGGAGAGTTGCTGATGCTCGTGCCGTCGGCCACGCC
TGGTCCACCTTGGGCCATGTCCGCGTTTCAGACCTTCGCCGCCCCGCCCG
GGCGACATCAGCATCAGCACTGGCAGCAAGTCTCGCCCTTCTCCTCTCCG
ACCCTCGTTGGTTCGGCGGCGTCTTTAAGCTGCCCGAGACGCGACCACCT
CCGCCGGCGGCGACATCTGGGAAGCTGCTGCCGCCAAAGCGGTGCACACG
GGGCAATTCACCCCTTGACGTTTGGGGCGAAATACGGGAGGGAGGGTCGA
TCCGCGATCGAAGGGTGAGTTGACTGGTCCAGTGCCTCCTGCCGGTGTTT
CCTGCCGCAAATCTTTGGCCAGCTCTTTTGAACTGCGGGGCCTGCTTGGA
CGTAGCACAGAGCATTTTTGTCACCTGGGTGTCAGATTTTTAGATTTCAT
TTGTGGGTGTCGCAAACGCGGCGGCATCGAGCAGCGTCTTGCCGAGCTGG
GAGAAATACTTTGGGGAGGGGTAAGAAACTTGCAGCTCCGTTGTGTTCGT
TGTTGTTGTTCATCGCATTTGCTTACCCTCTTGTTTTTTTTTCCGATGAG
GCAGGCACCCGAGTCTTCTGGGGTGTTTGGCTTCACCAACATCAACACCG
GAAGAAAGCAGCGGGGCAGCTCCAGGTAGCGCTGGGACATCTGGAAGTGA
AGAGACTGCGGAAAGCGGTGGAAGCGCGGCCGTCGGAAGCGACGCAAGAC
GCCTGGGTGGGCCAACCGAGCCCGGCACCGAAGGAGTTAGAGGTCGGCCG
GTGCCCGGGTGGGATGTTGGCTACGAGGCGACAGGACCTTTGGATGGAAG
AGTAAGCGACAGAAGCCGAGGCGGAGGCGGGGGCGGGGGCAACGGCAGCG
GCGAAGGTAGCAGCAGCGGCAGGAGAAGAAAGGAGGGGGGCCCCACCCAG
GGGAGGCTTCGGCTTAAGTGGGGTTTTGATCTAGATGTCCCGGTGAGGAA
TAGAGGCTGGATAGCCTCGACTGAGAGGACTCATTGTGGTGTGCACCAGA
CGAGAAGTGGACCGGCAGCCTGGCCGCCACAAGTGACTCTTTCGCGAACG
TTTTTTGTCGCACGAGGCAACATTTTCGCGTTTTTATATCGGATCCTTAA
CCCTGTGATTTTGTTGATGACTGCGCTCTGTGCCGTTGCCTACGAGGAGT
TTGCTTCACCGGATCATCGCAACCTTTGTCCCACGCTCGGTGCGGCGCCT
GTTCGAAATCGTTTCCAATGCGCACCTTGGCATGCGCCAGTGTCGGTCGC
CTCGTCTTGCAATGAAAGCCTGAGTGTGAGTGACTATTGGATCGGAAGAA
GCAGTTCGACATGACGCCAGCAGCCGGATGTTCGCGCCGCGGGGGCGTCA
AGGTGTAGATGCGCAAATCGAGGGCCCATCAGCAGCGCGGCGGTGTTGAT
TCTGGTGAAGACCAGCTCGCCCGAATGCCGCATCATCGACGAGATGTTAC
CTCGGTATGAGCGTTTTAAGATCGTTAAGACGGTGTCCTTGCGCTTGTTC
TCCGCGCTGCTATCGGCGTTTAGGTGCCGTCGGAGCTGGAGGCGCTGGTG
AAGGGACCGTGGGACCCGCAGGGAGACGTGTGGGCGAGGCAGCTCGACAT
TGCAGCGCAGGTATGTGCGTGTGGGGGGGGTTCTCGAGATGCCCTCACTG
CGGTGTCTATCGTGTCGCCGCAAGGTGGGCGATCTTGCTTGCGTGCGCCG
TCGGACATCGTGCTCGGGTACAGGAGATTATGTTCCGCTAACCTCTCATA
CGCCGGTGTTTACCCTCCCGTCGGTTGAGCATAGCTTTGCACGGCGTGGT
TATTCAGAGGTGCCACGCCTTACCCTTTGGGATAGGGGGGCTTCACCCAT
GACGGTAAGAGCAGTACAGGGGCATTGAAAGAGAGAAGCGAATGATTTGA
AAAAGGCAGCGAGAGGTGGGCATCGCCTCGTTGTCGTGAGTTCGGGCATA
GAGACATCGTTCGTTTTATTTTTCCTTCAGTGTAGCCATGTCAGGTCATG
CATAGCTTTGGTTTTTCTCGTTTTTTCAGCGCGTTGCTTTCAATGTTCGT
GTTCGGTCCAACAATGATCCAACAATTAACGCTTCAATAATGTTCCCGTG
AACACATCAGTGTTCTGCTCCCGATAAGGGGGCTGCTATGTCTTGTCCAG
TGTCGCTTGCCTCGTCTTTGTGCCGTTTTCTCTGATCGTCATGTGGAAAC
TTGGAACGATGCGCTCGTCATAATCCTGCGTAAGTGCTCGTCGACGATCT
GTTGTAAGAGTTAGCACATGTCTCTTTCGCGTGCCTTGCACGATCCTCAC
GGTTACAGTCTCGCGGCACGTTCGCTTTGTGTCTCATGGGCACGCCTCGC
TGACGTCACTGCGTCAGCTCCGTACTACGTTCGTCGATGAGGCAAAGACT
AGACAGAAAGTGCAGATTTTCTTTTGCAGCATGTTCACATCGGAAAATGC
GATAACTCTGCTGGACCGTCTTGCGTGGGAGGCCTCGGCCCCCTTTGTCG
GCAAATCGCTGGTTGTTGATCAACATGTATTGACCTGTTCTTGGGTACCC
CATCCGCTTCATTTCTCAGCCCCCTGGGCGTGTCACGTATGTATCGATTC
CAGCGAATGCCTTGGGCGTACACTTTTTTACACTGTTGTGTCTTGCTGGG
TTGCGCCCTAGGTGATAGAGCGGAGCGGTGGGGTGGTTTTCATGGAGCAG
CTGGCGCCTGTCCTCAACCCACGCGAGGGTCCGCCACAATGGTTTCGAGA
AAACGTCGTGGCTAGCGGCGGCGGCTACGGCGGTAAGGGCTCGATTGATG
GCATCACCACCGATGTAGTCGGCGGTGAGGCGCTTGTGCTGCGGCTATTG
CTCGACCTAAACGGTGTCCCAGAGGTGAGATTGTCAACGCCAAGAAATGC
TTGGGTTCAAGCTCACATCCCGTGCTAGATATTTCACAGCTGAAGAACCA
GACTATGGTAGAGGTCGATGTTGTACTTTCTGGCATCCCCGGCGGAAGAA
GACATATTTGTGCCGTAAATAAACCCGCACCTAAGAGCACAACACCAGCG
GGGCGGTGTAGTCTGAATGGCAGGATGGTACCTGTTTGAGCCCAGGGGCA
ATCACGTGCTTTGATGATGCCAACATGTTTTGGCAGTGTTAGCCCCTCGC
AGATTATTCGTGCTGTTTGAAGGTCGCGATGCAGGGTCAGAATCAAACGG
CAACGACGTACTGATATGACCGTAATCGTAGTACTCCACCAAACCTACCT
TTTCGGTTCTGGTTTCCTATCGGTGAAGCTTAGGATCTTTTGTTCTCACC
TTTCGTCTCCGTGATTATTCAGAGATCCCTAAGTTCTCGACGACATATGC
CCAGCCTGCTTTTGCGCACAAGCTCCTTCGATGCAAACTACACCCCGAGC
TCGATAAGAGATCATTATTCCTGAGCGATGCATTCCCAGTCTACGCATGC
TAAAAACAGCGCCCACTCTCTGTTTCGCTAGACATGAACTACCCTATTCT
GGACTCAAAACTTTGTTGAATACAAAGGACGGCATCTAGGCAATCGCGTC
AGGGTTTTTCTTCCCAACACGGACCACACTTTCATGATGGTCCTTGCTCT
ACAGGTGACAAGCGATGGCGACATACTCTACGTTTTTTCAGGGTTTGCGG
ATAAAAGCAAGGAGCCCACGGGTCTGGACAACACTGCACAGACGCTGGAA
GATTACGAAACAGACCAGCTAAATGCAGAAGGCGTGAAGGGCTTCTCGAC
CACACCTGAGGTTCTTCAATTCGAGGTATCCCCGCCGCAGATGCCGAATG
TGCCGGTGTCCCCGTTGAGTTAACCTTGCTTTGCAGGAGTAAAGCTGCAC
TTTCTTTCTACGACGCCTTCTCCGCACAAAGGGAAACGCAAGCACCGACT
CGTTCGCCTTCGAAAGCATGTGCAAAAACCTCGATGCGAGACCGCTGGAA
AAGTCGTATCAGGGATCTACGAAGTAAAAAAAGGGATGCCAGGAATGTTG
GCGGGTATATAACTCTGTCAACCCGCTCATACCGTTGAAGCACGTAGTAT
GAAGTCACGAAGGGGTCAAGGCCGTGCCACAACCCGAACAGAAACAACCC
CTGACAGCCTGCTGAAACGTTGTTTACTTTCTGTGATCTTCACGCAGTGC
TCTCTCCATTCGCGTGCAAGCTTGCCCCTTTATGTTGCCATCCAAAGAGG
CACTCGCTGTGCTGCTCTGGTATCATGGCCGTCATGCTTGAAGGCAGCGA
TAGGCAAGAAGCCGGGCTCGTCCAGTGCAGTCAACGTGATGTGCTTTTTT
GTTCTGGCGTTCGTTTGCTGTTGACCAGGAAGTTCCGAAGTTGCTGAAGG
CCTTGCCGAAGATGATGCCAGATCAGGGTCCCAAGGTAAACGCGACGTGA
ACCATCCAAAACTGGTGGAAAATCGTTGAAATTTCTACTCATGACAAAAA
AATGTGATTCGCAAACAAATGGACCGGCTCCGCGGCGGTTGTTTTTTTAC
TTTCACGACGTATGCCAGCTTCGCTTCTTCCCACCTGCACCACGAAGGCG
TTGACCTCCGTATTTCCACGATGTCGATGGTGAACCACCCTTACAGCCTC
AAGTGCTGTCGTCCCCCCAGATCAACATTTATGAGTTTTTCGTGCACGGG
CCCCTGTGATTCGCGCGCTTTCTCTGCCGACGCTTCAATTGCGAGAGGTA
TCATGTCAGGTGTACCAACGGGAGGCACTCGTCGTCGTCGTAGAAAAACG
CATGGGAGAGGAAATCGGGTCGATCGCAGCATGTTTCGTCAGAATTCCTT
GCATTTTTCAAGCCGCCGTTCAACTCGGCTGGCACCTACAGCTTGAAGTG
GCATGCATTCGTTGCGTATGGTGCTGGTGGCAGTTTATTCCGTGAACTTT
GTCGTTTTTCAAACCCTGTGCGATCAACTTTGTGCTGCTCATATCTTCGA
CCCGGTGCTTTCATTAGGTTGTGCGAGATTTCTTCCAGAGAACGGCGCTG
TCAGGGTTGGCACTTTTTCTGTCGATGTGGTTGCTCCTGGGCCAGCTGAT
ATTTCATTCTTCACCGACCTGGCTTTTTACCGGTGAGCTGCGATATATTT
CGAAGACAACACCGATGTAGCCGTTGCTCCAGTCGTGATTCTTACCGACT
TGTTTCTGCCTCATGTCGTTCGGGCACTATTGGTCGCTGAGTGAGTGCCT
GGGGTATCGACATTCTGTACGGAACTCGCGAGAGGCGACGGTGATAACAC
CACGAGACAGTGCGTACTCAAGTTTTGGACGGAGGACGGAGAAGGTGCGA
CCCAAGTGCAAAGTGTGAGACCCAAGCCCCTGGCGACCGAGTTATACCCA
CTTCAGCTGTAGCACGAACGACCTCGATGCGCCAAGCTGACCAAATCGTG
GCCCAGTGCCTCTTCGTTCAAGCCGGGTCCCCGACGAAAGATAGAAGACA
GATGGACTACCCGGGCTTGGCATTATGCCCTCGTTTGTCCTTCGGTACCC
GGTGACAATGCGCGGCTGTTCAGGTGCTCAACCTGAACCGATTCGTTGGC
AATGTCTACCAGTTGCTACACAGATTCATCACTTCCCGCAACAACCAGCA
GTGGCTGATCCACCTGTTATCCAGAATTCGCACGAGTGAAAAACCTCGTT
ACGCGGGTTGTCGATGGCCGGACTCACATGTTTTTGAAGAATCTTGGAGA
AATGTTTTTTGACCGCGACACGTGATCCGCGTGCTCCATGGCCGGCTTTA
CGGGATCGGCTGATGTCTCAGGCCCCGCGTATTTGGTCTGGGTGGGGTTG
GACGACACGTTGAGACGGTCTCGTGACACTTCGGCGAGGCAGCGAGACCG
ATGGAGAGGGCAGTGGGCGGACGTTTGTCGCGGGGATGGAGAGGCGATGT
GGCGAAAAAGGGCAGCGGCGAGGTCAAGGGCGAGAAGGCTTCGTGATGAA
GGCGTATGAGGCCTCCAAACAAGCCGGAATCTAGAAAAAAATAAGGGTCG
GGAGCGAGCTGCACAGCTGGCCCACGTGCTCTGCAGTGGGAGGCGTGCCG
CCGACGCTTTGCATTTGGTTGATATGTTCACGTTGGGGCTGCGACGAAGA
CCTACTGCTCCATTACTGTGGCGAAGGGAGGAAGGGCAAGCCGACGCCGA
GTAGAATCAGACCAGAACAGGAATGATCTGCCACTTCGTTCGCCGAGATG
ACCTTCGCCGCGGGCTCCTGCTTTGGGCGATGTTGCTAGTGCTGCGAGTA
CCGGGACATAACACGCGACCAACGATTGGCAAGGAACTACCTCGAGATTC
AAAGAGATTCTCAACCTATTTTGACGATAATGAAATGGGCGACATTGCCA
ACTGCGCGCCTATCACTGGTGCCCTTCAGCTGGCAATATCGGGTGGCATT
ACACTAATGCCTGTCTAGGTACGACCGACTAGAGCACGCCACTCATTTCT
CTTTTTCGCCCGAGGAAAAGCATCATCATCCTCAGTTTCGCGTTCCAATC
GTCCAAGTCTTGTTACCCTTCTTCGTTGCATCCGGTTTGCTTTACTGTGG
AGATTTTTCAGCGACTTCGCTACAGTGTGCTACGATACAACAAAGAGGTC
GCACGAACTGCTTCCACGCGCGCCGGAAGGCGACGAGAAACCTCCCGCAT
CCACTGCGCTGGTGCGCGGTGGGTAACTTTCCACTCATTCGTGTTTGAGA
GATGATACTGAGGAACGGGAACACAACCGGCGTATCGGTGATCTAGCTCA
CCCCGAATAATGTGATCGCGTTTCGAATGGGC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig101:23268..31249-

>mRNA_H-canaliculatus_F_contig101.128.1 ID=mRNA_H-canaliculatus_F_contig101.128.1|Name=mRNA_H-canaliculatus_F_contig101.128.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2754bp|location=Sequence derived from alignment at H-canaliculatus_F_contig101:23268..31249- (Hapterophycus canaliculatus Oshoro5f female)
ATGCTCGTGCCGTCGGCCACGCCTGGTCCACCTTGGGCCATGTCCGCGTT
TCAGACCTTCGCCGCCCCGCCCGGGCGACATCAGCATCAGCACTGGCAGC
AAGTCTCGCCCTTCTCCTCTCCGACCCTCGTTGGTTCGGCGGCGTCTTTA
AGCTGCCCGAGACGCGACCACCTCCGCCGGCGGCGACATCTGGGAAGCTG
CTGCCGCCAAAGCGGTGCACACGGGGCAATTCACCCCTTGACGTTTGGGG
CGAAATACGGGAGGGAGGGTCGATCCGCGATCGAAGGATGCTCGTGCCGT
CGGCCACGCCTGGTCCACCTTGGGCCATGTCCGCGTTTCAGACCTTCGCC
GCCCCGCCCGGGCGACATCAGCATCAGCACTGGCAGCAAGTCTCGCCCTT
CTCCTCTCCGACCCTCGTTGGTTCGGCGGCGTCTTTAAGCTGCCCGAGAC
GCGACCACCTCCGCCGGCGGCGACATCTGGGAAGCTGCTGCCGCCAAAGC
GGTGCACACGGGGCAATTCACCCCTTGACGTTTGGGGCGAAATACGGGAG
GGAGGGTCGATCCGCGATCGAAGGGCACCCGAGTCTTCTGGGGTGTTTGG
CTTCACCAACATCAACACCGGAAGAAAGCAGCGGGGCAGCTCCAGGTAGC
GCTGGGACATCTGGAAGTGAAGAGACTGCGGAAAGCGGTGGAAGCGCGGC
CGTCGGAAGCGACGCAAGACGCCTGGGTGGGCCAACCGAGCCCGGCACCG
AAGGAGTTAGAGGTCGGCCGGTGCCCGGGTGGGATGTTGGCTACGAGGCG
ACAGGACCTTTGGATGGAAGAGTAAGCGACAGAAGCCGAGGCGGAGGCGG
GGGCGGGGGCAACGGCAGCGGCGAAGGTAGCAGCAGCGGCAGGAGAAGAA
AGGAGGGGGGCCCCACCCAGGGGAGGCTTCGGCTTAAGTGGGGTTTTGAT
CTAGATGTCCCGGCACCCGAGTCTTCTGGGGTGTTTGGCTTCACCAACAT
CAACACCGGAAGAAAGCAGCGGGGCAGCTCCAGGTAGCGCTGGGACATCT
GGAAGTGAAGAGACTGCGGAAAGCGGTGGAAGCGCGGCCGTCGGAAGCGA
CGCAAGACGCCTGGGTGGGCCAACCGAGCCCGGCACCGAAGGAGTTAGAG
GTCGGCCGGTGCCCGGGTGGGATGTTGGCTACGAGGCGACAGGACCTTTG
GATGGAAGAGTAAGCGACAGAAGCCGAGGCGGAGGCGGGGGCGGGGGCAA
CGGCAGCGGCGAAGGTAGCAGCAGCGGCAGGAGAAGAAAGGAGGGGGGCC
CCACCCAGGGGAGGCTTCGGCTTAAGTGGGGTTTTGATCTAGATGTCCCG
GTGCCGTCGGAGCTGGAGGCGCTGGTGAAGGGACCGTGGGACCCGCAGGG
AGACGTGTGGGCGAGGCAGCTCGACATTGCAGCGCAGGTGCCGTCGGAGC
TGGAGGCGCTGGTGAAGGGACCGTGGGACCCGCAGGGAGACGTGTGGGCG
AGGCAGCTCGACATTGCAGCGCAGGTGATAGAGCGGAGCGGTGGGGTGGT
TTTCATGGAGCAGCTGGCGCCTGTCCTCAACCCACGCGAGGGTCCGCCAC
AATGGTTTCGAGAAAACGTCGTGGCTAGCGGCGGCGGCTACGGCGGTGAT
AGAGCGGAGCGGTGGGGTGGTTTTCATGGAGCAGCTGGCGCCTGTCCTCA
ACCCACGCGAGGGTCCGCCACAATGGTTTCGAGAAAACGTCGTGGCTAGC
GGCGGCGGCTACGGCGGGTTTGCGGATAAAAGCAAGGAGCCCACGGGTCT
GGACAACACTGCACAGACGCTGGAAGATTACGAAACAGACCAGCTAAATG
CAGAAGGCGTGAAGGGCTTCTCGACCACACCTGAGGTTCTTCAATTCGAG
GGTTTGCGGATAAAAGCAAGGAGCCCACGGGTCTGGACAACACTGCACAG
ACGCTGGAAGATTACGAAACAGACCAGCTAAATGCAGAAGGCGTGAAGGG
CTTCTCGACCACACCTGAGGTTCTTCAATTCGAGGAAGTTCCGAAGTTGC
TGAAGGCCTTGCCGAAGATGATGCCAGATCAGGGTCCCAAGGAAGTTCCG
AAGTTGCTGAAGGCCTTGCCGAAGATGATGCCAGATCAGGGTCCCAAGGT
TGTGCGAGATTTCTTCCAGAGAACGGCGCTGTCAGGGTTGGCACTTTTTC
TGTCGATGTGGTTGCTCCTGGGCCAGCTGATATTTCATTCTTCACCGACC
TGGCTTTTTACCGGTTGTGCGAGATTTCTTCCAGAGAACGGCGCTGTCAG
GGTTGGCACTTTTTCTGTCGATGTGGTTGCTCCTGGGCCAGCTGATATTT
CATTCTTCACCGACCTGGCTTTTTACCGGCCCCGCGTATTTGGTCTGGGT
GGGGTTGGACGACACGTTGAGACGGTCTCGTGACACTTCGGCGAGGCAGC
GAGACCGATGGAGAGGGCAGTGGGCGGACGTTTGTCGCGGGGATGGAGAG
GCGATGTGGCGAAAAAGGGCAGCGGCGAGGTCAAGGGCGAGAAGGCTTCG
TGATGAAGGCGTATGAGCCCCGCGTATTTGGTCTGGGTGGGGTTGGACGA
CACGTTGAGACGGTCTCGTGACACTTCGGCGAGGCAGCGAGACCGATGGA
GAGGGCAGTGGGCGGACGTTTGTCGCGGGGATGGAGAGGCGATGTGGCGA
AAAAGGGCAGCGGCGAGGTCAAGGGCGAGAAGGCTTCGTGATGAAGGCGT
ATGA
back to top