mRNA_H-canaliculatus_F_contig11432.1263.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11432.1263.1
Unique NamemRNA_H-canaliculatus_F_contig11432.1263.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11432.1263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11432contigH-canaliculatus_F_contig11432:249..812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size564
Cds size438
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928826.9463387-UTR-H-canaliculatus_F_contig11432:248..3741622928826.9463387-UTR-H-canaliculatus_F_contig11432:248..374Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11432 249..374 +
1696845580.0916104-UTR-H-canaliculatus_F_contig11432:248..3741696845580.0916104-UTR-H-canaliculatus_F_contig11432:248..374Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11432 249..374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928826.9626904-CDS-H-canaliculatus_F_contig11432:374..8121622928826.9626904-CDS-H-canaliculatus_F_contig11432:374..812Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11432 375..812 +
1696845580.1013534-CDS-H-canaliculatus_F_contig11432:374..8121696845580.1013534-CDS-H-canaliculatus_F_contig11432:374..812Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11432 375..812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11432.1263.1prot_H-canaliculatus_F_contig11432.1263.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11432 375..812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11432.1263.1

>prot_H-canaliculatus_F_contig11432.1263.1 ID=prot_H-canaliculatus_F_contig11432.1263.1|Name=mRNA_H-canaliculatus_F_contig11432.1263.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=146bp
MRYCCCTKDGTLETERAGRCSCRKTAPVIVGSGKQHAEARRWLATPLPTA
EWPGIRRGTASYRDRSAAEAGDTAMSSLSQTSRQQGPRRARQSASKATQY
QRPAAAAAADADARQQKRVKVCPATLSQARSAASRDSCLFPHISSR
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mRNA from alignment at H-canaliculatus_F_contig11432:249..812+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11432.1263.1 ID=mRNA_H-canaliculatus_F_contig11432.1263.1|Name=mRNA_H-canaliculatus_F_contig11432.1263.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=564bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11432:249..812+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCTGTACAGGCAAGAAAAAGCGGGTCGATAGGTGTCCAACGTGGAAGT
GCTCAGCGCGAGAAGCAGGAGCAGCATACCAAAAAGGACATCAATCGCCA
CCTCACCTCGTGAAGATGTTGAGGCTATGCGGTACTGCTGTTGCACGAAG
GACGGAACGCTAGAGACAGAGAGAGCTGGCCGTTGCTCTTGCCGTAAGAC
GGCCCCGGTTATCGTTGGCTCCGGCAAGCAGCACGCAGAGGCACGGCGGT
GGCTCGCGACACCTCTCCCGACCGCTGAGTGGCCGGGGATACGCAGGGGC
ACCGCGAGCTACAGGGACAGGAGCGCCGCCGAGGCTGGGGACACAGCTAT
GTCAAGTTTATCCCAGACATCTCGCCAGCAAGGGCCCAGGCGCGCCCGAC
AGAGTGCATCAAAGGCAACACAGTACCAGCGTCCCGCGGCGGCGGCAGCG
GCAGACGCGGATGCTCGTCAGCAAAAGCGAGTGAAAGTCTGCCCCGCAAC
GCTCTCCCAGGCGCGCTCGGCAGCCTCCCGGGACTCTTGTCTGTTTCCTC
ACATTTCGTCCCGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11432:249..812+

>mRNA_H-canaliculatus_F_contig11432.1263.1 ID=mRNA_H-canaliculatus_F_contig11432.1263.1|Name=mRNA_H-canaliculatus_F_contig11432.1263.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=876bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11432:249..812+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGGTACTGCTGTTGCACGAAGGACGGAACGCTAGAGACAGAGAGAGC
TGGCCGTTGCTCTTGCCGTAAGACGGCCCCGGTTATCGTTGGCTCCGGCA
AGCAGCACGCAGAGGCACGGCGGTGGCTCGCGACACCTCTCCCGACCGCT
GAGTGGCCGGGGATACGCAGGGGCACCGCGAGCTACAGGGACAGGAGCGC
CGCCGAGGCTGGGGACACAGCTATGTCAAGTTTATCCCAGACATCTCGCC
AGCAAGGGCCCAGGCGCGCCCGACAGAGTGCATCAAAGGCAACACAGTAC
CAGCGTCCCGCGGCGGCGGCAGCGGCAGACGCGGATGCTCGTCAGCAAAA
GCGAGTGAAAGTCTGCCCCGCAACGCTCTCCCAGGCGCGCTCGGCAGCCT
CCCGGGACTCTTGTCTGTTTCCTCACATTTCGTCCCGCATGCGGTACTGC
TGTTGCACGAAGGACGGAACGCTAGAGACAGAGAGAGCTGGCCGTTGCTC
TTGCCGTAAGACGGCCCCGGTTATCGTTGGCTCCGGCAAGCAGCACGCAG
AGGCACGGCGGTGGCTCGCGACACCTCTCCCGACCGCTGAGTGGCCGGGG
ATACGCAGGGGCACCGCGAGCTACAGGGACAGGAGCGCCGCCGAGGCTGG
GGACACAGCTATGTCAAGTTTATCCCAGACATCTCGCCAGCAAGGGCCCA
GGCGCGCCCGACAGAGTGCATCAAAGGCAACACAGTACCAGCGTCCCGCG
GCGGCGGCAGCGGCAGACGCGGATGCTCGTCAGCAAAAGCGAGTGAAAGT
CTGCCCCGCAACGCTCTCCCAGGCGCGCTCGGCAGCCTCCCGGGACTCTT
GTCTGTTTCCTCACATTTCGTCCCGC
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