mRNA_H-canaliculatus_F_contig11426.1258.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11426.1258.1
Unique NamemRNA_H-canaliculatus_F_contig11426.1258.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11426.1258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11426contigH-canaliculatus_F_contig11426:3318..3708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928826.3261094-CDS-H-canaliculatus_F_contig11426:3317..37071622928826.3261094-CDS-H-canaliculatus_F_contig11426:3317..3707Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11426 3318..3707 +
1696845580.0070157-CDS-H-canaliculatus_F_contig11426:3317..37071696845580.0070157-CDS-H-canaliculatus_F_contig11426:3317..3707Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11426 3318..3707 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11426.1258.1prot_H-canaliculatus_F_contig11426.1258.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11426 3318..3707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11426.1258.1

>prot_H-canaliculatus_F_contig11426.1258.1 ID=prot_H-canaliculatus_F_contig11426.1258.1|Name=mRNA_H-canaliculatus_F_contig11426.1258.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=130bp
GHVSERCLSWRCCRRHRRRPDRRRHRRRSVSEHSAVPGARWLLLAFAKVR
ISSLTLTHSPLRLHEAWRGWNERKLGSGRGIDSRVTSKRAEQRRNIAHEK
TNRDKETLSAIFFTSIDRNAKLRNFSRLRQ
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mRNA from alignment at H-canaliculatus_F_contig11426:3318..3708+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11426.1258.1 ID=mRNA_H-canaliculatus_F_contig11426.1258.1|Name=mRNA_H-canaliculatus_F_contig11426.1258.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=391bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11426:3318..3708+ (Hapterophycus canaliculatus Oshoro5f female)
GGCCACGTTTCGGAGCGATGCCTTTCATGGCGTTGCTGTAGGCGTCATCG
TCGCCGTCCTGATCGTCGTCGTCATCGTCGTCGATCTGTTTCGGAGCATT
CGGCGGTGCCGGGGGCGAGATGGTTGTTGTTGGCTTTTGCCAAGGTGCGC
ATCTCGTCACTCACTCTCACTCACTCACCCCTACGCCTTCACGAAGCCTG
GAGGGGATGGAATGAACGAAAGCTCGGATCGGGGAGGGGCATCGACAGTA
GAGTCACGTCCAAGCGTGCGGAGCAGAGACGAAACATCGCCCACGAGAAG
ACAAACAGGGACAAAGAAACGTTATCAGCGATTTTTTTTACGAGCATTGA
TCGCAACGCGAAGCTGCGCAATTTCTCCCGGCTGAGGCAAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11426:3318..3708+

>mRNA_H-canaliculatus_F_contig11426.1258.1 ID=mRNA_H-canaliculatus_F_contig11426.1258.1|Name=mRNA_H-canaliculatus_F_contig11426.1258.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=780bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11426:3318..3708+ (Hapterophycus canaliculatus Oshoro5f female)
GGCCACGTTTCGGAGCGATGCCTTTCATGGCGTTGCTGTAGGCGTCATCG
TCGCCGTCCTGATCGTCGTCGTCATCGTCGTCGATCTGTTTCGGAGCATT
CGGCGGTGCCGGGGGCGAGATGGTTGTTGTTGGCTTTTGCCAAGGTGCGC
ATCTCGTCACTCACTCTCACTCACTCACCCCTACGCCTTCACGAAGCCTG
GAGGGGATGGAATGAACGAAAGCTCGGATCGGGGAGGGGCATCGACAGTA
GAGTCACGTCCAAGCGTGCGGAGCAGAGACGAAACATCGCCCACGAGAAG
ACAAACAGGGACAAAGAAACGTTATCAGCGATTTTTTTTACGAGCATTGA
TCGCAACGCGAAGCTGCGCAATTTCTCCCGGCTGAGGCAAGGCCACGTTT
CGGAGCGATGCCTTTCATGGCGTTGCTGTAGGCGTCATCGTCGCCGTCCT
GATCGTCGTCGTCATCGTCGTCGATCTGTTTCGGAGCATTCGGCGGTGCC
GGGGGCGAGATGGTTGTTGTTGGCTTTTGCCAAGGTGCGCATCTCGTCAC
TCACTCTCACTCACTCACCCCTACGCCTTCACGAAGCCTGGAGGGGATGG
AATGAACGAAAGCTCGGATCGGGGAGGGGCATCGACAGTAGAGTCACGTC
CAAGCGTGCGGAGCAGAGACGAAACATCGCCCACGAGAAGACAAACAGGG
ACAAAGAAACGTTATCAGCGATTTTTTTTACGAGCATTGATCGCAACGCG
AAGCTGCGCAATTTCTCCCGGCTGAGGCAA
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