mRNA_H-canaliculatus_F_contig11426.1257.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11426.1257.1
Unique NamemRNA_H-canaliculatus_F_contig11426.1257.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11426.1257.1 vs. uniprot
Match: A0A485KNC4_9STRA (DNA topoisomerase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KNC4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.850e-9
Identity = 28/45 (62.22%), Postives = 31/45 (68.89%), Query Frame = 3 
Query:   54 LCKGHQEPCSLLTTRKEGPNKDRQFYRCPRPTKDEDCGHFEWADE 188
            LC GHQ PC   TTRKEGPNK R F+ CPRP + E C  FEW D+
Sbjct:  933 LCPGHQLPCVSRTTRKEGPNKGRFFFVCPRP-QGEQCDFFEWCDQ 976
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11426.1257.1 vs. uniprot
Match: UPI000E6E4BFE (DNA topoisomerase 3-alpha-like n=1 Tax=Ctenocephalides felis TaxID=7515 RepID=UPI000E6E4BFE)

HSP 1 Score: 61.2 bits (147), Expect = 8.730e-9
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 3 
Query:   54 LCKGHQEPCSLLTTRKEGPNKDRQFYRCPRPTKDEDCGHFEWADEEPRDSS 206
            LC G QEP    T +KEGPNK R+FY CP+P  ++ C  FEWA++EP   S
Sbjct:  616 LCSGCQEPARKQTVKKEGPNKGRKFYVCPKPM-EQQCKFFEWAEDEPEHDS 665
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11426.1257.1 vs. uniprot
Match: UPI000E6E4382 (probable serine/threonine-protein kinase clkA n=3 Tax=Ctenocephalides felis TaxID=7515 RepID=UPI000E6E4382)

HSP 1 Score: 61.2 bits (147), Expect = 8.790e-9
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 3 
Query:   54 LCKGHQEPCSLLTTRKEGPNKDRQFYRCPRPTKDEDCGHFEWADEEPRDSS 206
            LC G QEP    T +KEGPNK R+FY CP+P  ++ C  FEWA++EP   S
Sbjct:  707 LCSGCQEPARKQTVKKEGPNKGRKFYVCPKPM-EQQCKFFEWAEDEPEHDS 756
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11426.1257.1 vs. uniprot
Match: UPI000E6E1F26 (DNA topoisomerase 3-alpha n=5 Tax=Ctenocephalides felis TaxID=7515 RepID=UPI000E6E1F26)

HSP 1 Score: 61.2 bits (147), Expect = 8.870e-9
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 3 
Query:   54 LCKGHQEPCSLLTTRKEGPNKDRQFYRCPRPTKDEDCGHFEWADEEPRDSS 206
            LC G QEP    T +KEGPNK R+FY CP+P  ++ C  FEWA++EP   S
Sbjct:  837 LCSGCQEPARKQTVKKEGPNKGRKFYVCPKPM-EQQCKFFEWAEDEPEHDS 886
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11426.1257.1 vs. uniprot
Match: B3MN55_DROAN (DNA topoisomerase n=3 Tax=ananassae subgroup TaxID=32347 RepID=B3MN55_DROAN)

HSP 1 Score: 60.5 bits (145), Expect = 1.670e-8
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 3 
Query:   54 LCKGHQEPCSLLTTRKEGPNKDRQFYRCPRPTKDEDCGHFEWADEEP 194
            LC G Q+    LT R++GPNK RQFY+CP+P   ++C  F+WADE+P
Sbjct: 1025 LCTGCQQAAIQLTVRRDGPNKGRQFYKCPKP---DECKFFQWADEQP 1068
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11426.1257.1 vs. uniprot
Match: V4B1F0_LOTGI (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4B1F0_LOTGI)

HSP 1 Score: 58.5 bits (140), Expect = 7.540e-8
Identity = 25/53 (47.17%), Postives = 33/53 (62.26%), Query Frame = 3 
Query:   54 LCKGHQEPCSLLTTRKEGPNKDRQFYRCPR-----PTKDEDCGHFEWADEEPR 197
            LCKGH+EPC L T +K+GPNK++QFY C R        +  C HF W   +P+
Sbjct:  481 LCKGHKEPCVLRTVKKDGPNKNKQFYVCARGEGHSSNPEARCDHFVWVTHKPK 533
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11426.1257.1 vs. uniprot
Match: A0A1S3K1C6_LINUN (DNA topoisomerase n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3K1C6_LINUN)

HSP 1 Score: 58.2 bits (139), Expect = 1.080e-7
Identity = 29/51 (56.86%), Postives = 34/51 (66.67%), Query Frame = 3 
Query:   45 DGRL-CKGHQEPCSLLTTRKEGPNKDRQFYRCPRPTKDEDCGHFEWADEEP 194
            DG + C+ HQ     LT  KEGPNK R FY CP+P + E CG F+WADEEP
Sbjct: 1001 DGEVQCRCHQS-AKQLTVHKEGPNKGRPFYACPKP-RGEGCGFFQWADEEP 1049
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11426.1257.1 vs. uniprot
Match: A0A812YBF8_9DINO (NEIL3 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812YBF8_9DINO)

HSP 1 Score: 57.8 bits (138), Expect = 1.500e-7
Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 3 
Query:   54 LCKGHQEPCSLLTTRKEGPNKDRQFYRCPRPTKDEDCGHFEWADEEP 194
            LC GH E C  +  RKEGPNK R F+ CPRP +++ C  F WAD  P
Sbjct: 1307 LCPGHGERCREVEVRKEGPNKGRHFFACPRP-REQQCDFFAWADAGP 1352
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11426.1257.1 vs. uniprot
Match: A0A433TU66_ELYCH (DNA-(apurinic or apyrimidinic site) endonuclease (Fragment) n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433TU66_ELYCH)

HSP 1 Score: 57.4 bits (137), Expect = 1.920e-7
Identity = 25/47 (53.19%), Postives = 29/47 (61.70%), Query Frame = 3 
Query:   54 LCKGHQEPCSLLTTRKEGPNKDRQFYRCPRPTKDED-----CGHFEW 179
            LC GH+EPC L T RK GPNK++QFY CPRP          C  F+W
Sbjct:  474 LCPGHKEPCVLKTVRKNGPNKNKQFYSCPRPDGPPGNTQFRCNFFQW 520
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11426.1257.1 vs. uniprot
Match: UPI0003594270 (DNA-(apurinic or apyrimidinic site) endonuclease 2 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI0003594270)

HSP 1 Score: 57.4 bits (137), Expect = 1.940e-7
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 3 
Query:   54 LCKGHQEPCSLLTTRKEGPNKDRQFYRCPRPT----KDE-DCGHFEWADEE 191
            LC GH+EPC L T +K GPNK++QFY CPRP     K E  C  F+W +++
Sbjct:  555 LCPGHKEPCVLKTVKKAGPNKNKQFYSCPRPDGAPGKPEFRCNFFQWLNDK 605
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11426.1257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A485KNC4_9STRA4.850e-962.22DNA topoisomerase n=1 Tax=Aphanomyces stellatus Ta... [more]
UPI000E6E4BFE8.730e-952.94DNA topoisomerase 3-alpha-like n=1 Tax=Ctenocephal... [more]
UPI000E6E43828.790e-952.94probable serine/threonine-protein kinase clkA n=3 ... [more]
UPI000E6E1F268.870e-952.94DNA topoisomerase 3-alpha n=5 Tax=Ctenocephalides ... [more]
B3MN55_DROAN1.670e-853.19DNA topoisomerase n=3 Tax=ananassae subgroup TaxID... [more]
V4B1F0_LOTGI7.540e-847.17DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A1S3K1C6_LINUN1.080e-756.86DNA topoisomerase n=1 Tax=Lingula unguis TaxID=757... [more]
A0A812YBF8_9DINO1.500e-753.19NEIL3 protein n=1 Tax=Symbiodinium sp. CCMP2592 Ta... [more]
A0A433TU66_ELYCH1.920e-753.19DNA-(apurinic or apyrimidinic site) endonuclease (... [more]
UPI00035942701.940e-750.98DNA-(apurinic or apyrimidinic site) endonuclease 2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11426contigH-canaliculatus_F_contig11426:1574..2430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size304
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928826.2162223-CDS-H-canaliculatus_F_contig11426:1574..17731622928826.2162223-CDS-H-canaliculatus_F_contig11426:1574..1773Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11426 1575..1773 -
1696845579.971435-CDS-H-canaliculatus_F_contig11426:1574..17731696845579.971435-CDS-H-canaliculatus_F_contig11426:1574..1773Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11426 1575..1773 -
1622928826.230613-CDS-H-canaliculatus_F_contig11426:2326..24301622928826.230613-CDS-H-canaliculatus_F_contig11426:2326..2430Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11426 2327..2430 -
1696845579.9802637-CDS-H-canaliculatus_F_contig11426:2326..24301696845579.9802637-CDS-H-canaliculatus_F_contig11426:2326..2430Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11426 2327..2430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11426.1257.1prot_H-canaliculatus_F_contig11426.1257.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11426 1575..2430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11426.1257.1

>prot_H-canaliculatus_F_contig11426.1257.1 ID=prot_H-canaliculatus_F_contig11426.1257.1|Name=mRNA_H-canaliculatus_F_contig11426.1257.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=101bp
GTTEEAGGAEVGGAGTVGCARGTRSRAACSRPGKRALTKTGSSTGVPDRR
RTRIAGTSNGQTRNREIALLAAAPAIKAEGAAAVGTGDRATGQGQGQVQR
R
back to top

mRNA from alignment at H-canaliculatus_F_contig11426:1574..2430-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11426.1257.1 ID=mRNA_H-canaliculatus_F_contig11426.1257.1|Name=mRNA_H-canaliculatus_F_contig11426.1257.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=857bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11426:1574..2430- (Hapterophycus canaliculatus Oshoro5f female)
GGGACGACGGAGGAGGCGGGGGGGGCGGAGGTAGGGGGGGCGGGGACGGT
AGGCTGTGCAAGGGGCACCAGGAGCCGTGCAGCTTGCTCACGACCCGGAA
AGAGGTGAGACTTGGAGTGGTAGGGCTTGTGTATCCCGTTTCCCTCCGTC
TGCCCGCCTCGTTGCCTCTCCGCCCGCCCACCCGCCTGCCTACCTCCCCC
TCTGCCTGTCTACCTGGTCGTGTCTGTGTCGCTCTCTGTGTGTATGTCCG
TCTGTTTTTCGGTGTGCCTGTGCCTGTGTGCGTCTTCGTTTGTTCCATGA
ACGTGAATTACACTCACACCAACCGACCAGCCAATAGAAGATGACGTCAC
GTTGGCGATTCGGACGTGAAAAAAAATCGTAATTCCTGTCCGCGAGGTCG
CGACCGAGATAACGCTTTCGGGGACGTTGCGTGTCTGCCATCAGTCGGCG
ACAATTTGGTCGTTTTGAATCGGTCCCGATGAACTTTTTCCGTTCTCGGA
AATATCGAGAATTTGTCCGCTTCGTATAGGGAGCTTGTGGACGAGACAAA
CCGACGCTCCGGCCATTGACGACCTCACACGAGACAAACTGGTGAGAAAC
GCATGCCTTCCCCCCCCCCCCCGATGGCCCATGCCTTCCCTGAAAACGGC
AAAAAAGGGCCCTAACAAAGACCGGCAGTTCTACCGGTGTCCCAGACCGA
CGAAGGACGAGGATTGCGGGCACTTCGAATGGGCAGACGAGGAACCGCGA
GATAGCTCTTCTAGCAGCAGCACCCGCTATCAAAGCGGAGGGGGCGGCGG
CAGTGGGAACTGGGGATCGAGCTACGGGTCAGGGTCAGGGTCAGGTTCAA
CGTCGCG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11426:1574..2430-

>mRNA_H-canaliculatus_F_contig11426.1257.1 ID=mRNA_H-canaliculatus_F_contig11426.1257.1|Name=mRNA_H-canaliculatus_F_contig11426.1257.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=606bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11426:1574..2430- (Hapterophycus canaliculatus Oshoro5f female)
GGGACGACGGAGGAGGCGGGGGGGGCGGAGGTAGGGGGGGCGGGGACGGT
AGGCTGTGCAAGGGGCACCAGGAGCCGTGCAGCTTGCTCACGACCCGGAA
AGAGGGGACGACGGAGGAGGCGGGGGGGGCGGAGGTAGGGGGGGCGGGGA
CGGTAGGCTGTGCAAGGGGCACCAGGAGCCGTGCAGCTTGCTCACGACCC
GGAAAGAGGGCCCTAACAAAGACCGGCAGTTCTACCGGTGTCCCAGACCG
ACGAAGGACGAGGATTGCGGGCACTTCGAATGGGCAGACGAGGAACCGCG
AGATAGCTCTTCTAGCAGCAGCACCCGCTATCAAAGCGGAGGGGGCGGCG
GCAGTGGGAACTGGGGATCGAGCTACGGGTCAGGGTCAGGGTCAGGTTCA
ACGTCGCGGCCCTAACAAAGACCGGCAGTTCTACCGGTGTCCCAGACCGA
CGAAGGACGAGGATTGCGGGCACTTCGAATGGGCAGACGAGGAACCGCGA
GATAGCTCTTCTAGCAGCAGCACCCGCTATCAAAGCGGAGGGGGCGGCGG
CAGTGGGAACTGGGGATCGAGCTACGGGTCAGGGTCAGGGTCAGGTTCAA
CGTCGC
back to top