mRNA_H-canaliculatus_F_contig11417.1252.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11417.1252.1
Unique NamemRNA_H-canaliculatus_F_contig11417.1252.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11417.1252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11417contigH-canaliculatus_F_contig11417:273..1295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score65.1
Seed ortholog evalue6.5e-08
Seed eggNOG ortholog391165.GbCGDNIH1_1408
KEGG koko:K15125
KEGG Pathwayko05133,map05133
EggNOG free text desc.Parallel beta-helix repeats
EggNOG OGs1RFJR@1224,2U8FI@28211,COG3210@1,COG3210@2
COG Functional cat.U
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536
Hectar predicted targeting categoryother localisation
Exons2
Model size906
Cds size906
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928825.5687554-CDS-H-canaliculatus_F_contig11417:272..6851622928825.5687554-CDS-H-canaliculatus_F_contig11417:272..685Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11417 273..685 -
1696845579.670796-CDS-H-canaliculatus_F_contig11417:272..6851696845579.670796-CDS-H-canaliculatus_F_contig11417:272..685Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11417 273..685 -
1622928825.5832696-CDS-H-canaliculatus_F_contig11417:802..12951622928825.5832696-CDS-H-canaliculatus_F_contig11417:802..1295Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11417 803..1295 -
1696845579.6879673-CDS-H-canaliculatus_F_contig11417:802..12951696845579.6879673-CDS-H-canaliculatus_F_contig11417:802..1295Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11417 803..1295 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11417.1252.1prot_H-canaliculatus_F_contig11417.1252.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11417 273..1295 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11417.1252.1

>prot_H-canaliculatus_F_contig11417.1252.1 ID=prot_H-canaliculatus_F_contig11417.1252.1|Name=mRNA_H-canaliculatus_F_contig11417.1252.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=302bp
MGDVIGASHAIHLTSAVGQNNITIVDDATVSSLNHAIRLDGIGNTIINDG
SVSSFSASGIYATDDFNQVYNAGTITSGGFGLIAGAIITGKSSLVMNSGS
LTGKQDGIRAEASANITNTGSIFAQEKGISLANSTGQSEVLNSGQISSDD
KGIDAFHNLLVTNSVLNSGEISAGLNGVQLTGDSALVRSTGDITAFNNGV
VIGHSGKVINAGVISAGGDGISTLASIGSVSIINTGQIVSGTNGVISKQI
TSIQNAGLITAEGIGISLEIGGSSARNTGVIQSTSSAISIADNSTVINSG
TL
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mRNA from alignment at H-canaliculatus_F_contig11417:273..1295-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11417.1252.1 ID=mRNA_H-canaliculatus_F_contig11417.1252.1|Name=mRNA_H-canaliculatus_F_contig11417.1252.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1023bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11417:273..1295- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGTGATGTGATTGGCGCTTCTCATGCGATCCATTTGACGAGTGCTGT
GGGTCAAAATAACATTACGATCGTGGATGACGCCACGGTTTCTTCATTAA
ATCACGCAATTCGACTAGATGGTATTGGCAACACAATTATTAATGACGGA
TCAGTCTCTTCATTTTCAGCTTCCGGAATATACGCGACTGATGATTTCAA
TCAGGTCTATAATGCAGGCACAATAACGTCAGGTGGCTTCGGACTTATTG
CCGGTGCCATTATAACAGGTAAGTCATCCTTGGTTATGAATTCGGGTTCT
TTGACGGGTAAACAAGACGGAATTCGTGCGGAGGCTAGCGCTAATATTAC
GAATACAGGGTCTATTTTCGCTCAAGAAAAAGGTATAAGTCTCGCTAACA
GCACAGGCCAATCTGAGGTTTTGAATAGTGGCCAAATCAGTTCTGACGAT
AAGGGAATAGATGCTTTTCACAACCTCCTCGTCACGAATTCTGGTTTGAT
CCAATCTGGCGGAACAGGCGTTTCTGCAGCGGGTGTTCTGGATATGTCTA
ATACGGGGGAAATTATATCCTTAGGCACCGGCGCACTGTCCACAGTATCA
GCATCGACAGTGCTAAATAGCGGTGAAATTTCAGCAGGATTAAACGGCGT
ACAATTGACAGGCGATAGTGCCTTGGTTCGCAGTACGGGCGACATTACGG
CCTTTAACAATGGTGTCGTCATCGGGCATAGCGGTAAAGTGATCAATGCA
GGTGTCATCAGTGCGGGTGGCGACGGTATAAGTACGCTCGCCTCGATTGG
TAGTGTATCCATAATTAATACGGGACAAATTGTGTCTGGTACAAATGGTG
TGATTTCCAAACAAATCACAAGCATTCAAAATGCGGGCCTTATAACGGCA
GAAGGGATAGGTATTTCGCTAGAAATAGGCGGGTCGTCTGCGCGCAATAC
TGGCGTCATACAGTCCACGTCCTCGGCGATATCGATCGCTGATAATTCTA
CGGTCATAAACTCTGGAACACTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11417:273..1295-

>mRNA_H-canaliculatus_F_contig11417.1252.1 ID=mRNA_H-canaliculatus_F_contig11417.1252.1|Name=mRNA_H-canaliculatus_F_contig11417.1252.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1812bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11417:273..1295- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGTGATGTGATTGGCGCTTCTCATGCGATCCATTTGACGAGTGCTGT
GGGTCAAAATAACATTACGATCGTGGATGACGCCACGGTTTCTTCATTAA
ATCACGCAATTCGACTAGATGGTATTGGCAACACAATTATTAATGACGGA
TCAGTCTCTTCATTTTCAGCTTCCGGAATATACGCGACTGATGATTTCAA
TCAGGTCTATAATGCAGGCACAATAACGTCAGGTGGCTTCGGACTTATTG
CCGGTGCCATTATAACAGGTAAGTCATCCTTGGTTATGAATTCGGGTTCT
TTGACGGGTAAACAAGACGGAATTCGTGCGGAGGCTAGCGCTAATATTAC
GAATACAGGGTCTATTTTCGCTCAAGAAAAAGGTATAAGTCTCGCTAACA
GCACAGGCCAATCTGAGGTTTTGAATAGTGGCCAAATCAGTTCTGACGAT
AAGGGAATAGATGCTTTTCACAACCTCCTCGTCACGAATTCTGATGGGTG
ATGTGATTGGCGCTTCTCATGCGATCCATTTGACGAGTGCTGTGGGTCAA
AATAACATTACGATCGTGGATGACGCCACGGTTTCTTCATTAAATCACGC
AATTCGACTAGATGGTATTGGCAACACAATTATTAATGACGGATCAGTCT
CTTCATTTTCAGCTTCCGGAATATACGCGACTGATGATTTCAATCAGGTC
TATAATGCAGGCACAATAACGTCAGGTGGCTTCGGACTTATTGCCGGTGC
CATTATAACAGGTAAGTCATCCTTGGTTATGAATTCGGGTTCTTTGACGG
GTAAACAAGACGGAATTCGTGCGGAGGCTAGCGCTAATATTACGAATACA
GGGTCTATTTTCGCTCAAGAAAAAGGTATAAGTCTCGCTAACAGCACAGG
CCAATCTGAGGTTTTGAATAGTGGCCAAATCAGTTCTGACGATAAGGGAA
TAGATGCTTTTCACAACCTCCTCGTCACGAATTCTGTGCTAAATAGCGGT
GAAATTTCAGCAGGATTAAACGGCGTACAATTGACAGGCGATAGTGCCTT
GGTTCGCAGTACGGGCGACATTACGGCCTTTAACAATGGTGTCGTCATCG
GGCATAGCGGTAAAGTGATCAATGCAGGTGTCATCAGTGCGGGTGGCGAC
GGTATAAGTACGCTCGCCTCGATTGGTAGTGTATCCATAATTAATACGGG
ACAAATTGTGTCTGGTACAAATGGTGTGATTTCCAAACAAATCACAAGCA
TTCAAAATGCGGGCCTTATAACGGCAGAAGGGATAGGTATTTCGCTAGAA
ATAGGCGGGTCGTCTGCGCGCAATACTGGCGTCATACAGTCCACGTCCTC
GGCGATATCGATCGCTGATAATTCTACGGTCATAAACTCTGGAACACTTT
GCTAAATAGCGGTGAAATTTCAGCAGGATTAAACGGCGTACAATTGACAG
GCGATAGTGCCTTGGTTCGCAGTACGGGCGACATTACGGCCTTTAACAAT
GGTGTCGTCATCGGGCATAGCGGTAAAGTGATCAATGCAGGTGTCATCAG
TGCGGGTGGCGACGGTATAAGTACGCTCGCCTCGATTGGTAGTGTATCCA
TAATTAATACGGGACAAATTGTGTCTGGTACAAATGGTGTGATTTCCAAA
CAAATCACAAGCATTCAAAATGCGGGCCTTATAACGGCAGAAGGGATAGG
TATTTCGCTAGAAATAGGCGGGTCGTCTGCGCGCAATACTGGCGTCATAC
AGTCCACGTCCTCGGCGATATCGATCGCTGATAATTCTACGGTCATAAAC
TCTGGAACACTT
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