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Homology
BLAST of mRNA_H-canaliculatus_F_contig1141.1248.1 vs. uniprot
Match: A0A6H5L8P8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8P8_9PHAE) HSP 1 Score: 141 bits (355), Expect = 5.600e-33 Identity = 83/154 (53.90%), Postives = 96/154 (62.34%), Query Frame = 1
Query: 670 LQGVLEMHAERLEDSANEREELWRAIESLRLAEPSDVTGFTEIDRAHLTFGAGMP-VGGYSTCVEASWHGSRVAVKQLLPPNRTRLEMGGTSVGXXXXXXXWKTGGTPTRGVVWASASSAMRRELRVLQALRFEFLVPIYGACTAPPNGVCLVM 1128
+Q +LEMH+ERLED EREELW+AIE LRLAEPSD+TGFTEIDRAHLTFG+GMP V +S + GSR PT +A+SAMRR++R+LQAL FEFLVPIYGACTAPPNGV LVM
Sbjct: 1 MQRLLEMHSERLEDRVEEREELWKAIEGLRLAEPSDITGFTEIDRAHLTFGSGMPLVCHFSISRDCGGGGSRAL---------------------------------PT------AAASAMRRQIRLLQALHFEFLVPIYGACTAPPNGVSLVM 115
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 77.8 |
| Seed ortholog evalue | 1.2e-11 |
| Seed eggNOG ortholog | 2880.D7FGQ1 |
| EggNOG free text desc. | protein kinase activity |
| EggNOG OGs | COG0515@1,KOG0192@2759 |
| Ec32 ortholog description | Hypothetical leucine rich repeat protein |
| Ec32 ortholog | Ec-21_003710.1 |
| COG Functional cat. | KLT |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1128 |
| Cds size | 1128 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622928825.2188046-CDS-H-canaliculatus_F_contig1141:24180..24711 | 1622928825.2188046-CDS-H-canaliculatus_F_contig1141:24180..24711 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1141 24181..24711 + |
| 1696845579.535157-CDS-H-canaliculatus_F_contig1141:24180..24711 | 1696845579.535157-CDS-H-canaliculatus_F_contig1141:24180..24711 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1141 24181..24711 + |
| 1622928825.2306268-CDS-H-canaliculatus_F_contig1141:25666..25810 | 1622928825.2306268-CDS-H-canaliculatus_F_contig1141:25666..25810 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1141 25667..25810 + |
| 1696845579.5454807-CDS-H-canaliculatus_F_contig1141:25666..25810 | 1696845579.5454807-CDS-H-canaliculatus_F_contig1141:25666..25810 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1141 25667..25810 + |
| 1622928825.2452626-CDS-H-canaliculatus_F_contig1141:27315..27477 | 1622928825.2452626-CDS-H-canaliculatus_F_contig1141:27315..27477 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1141 27316..27477 + |
| 1696845579.553637-CDS-H-canaliculatus_F_contig1141:27315..27477 | 1696845579.553637-CDS-H-canaliculatus_F_contig1141:27315..27477 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1141 27316..27477 + |
| 1622928825.262354-CDS-H-canaliculatus_F_contig1141:27909..28161 | 1622928825.262354-CDS-H-canaliculatus_F_contig1141:27909..28161 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1141 27910..28161 + |
| 1696845579.5621026-CDS-H-canaliculatus_F_contig1141:27909..28161 | 1696845579.5621026-CDS-H-canaliculatus_F_contig1141:27909..28161 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1141 27910..28161 + |
| 1622928825.278182-CDS-H-canaliculatus_F_contig1141:29355..29394 | 1622928825.278182-CDS-H-canaliculatus_F_contig1141:29355..29394 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1141 29356..29394 + |
| 1696845579.5704892-CDS-H-canaliculatus_F_contig1141:29355..29394 | 1696845579.5704892-CDS-H-canaliculatus_F_contig1141:29355..29394 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1141 29356..29394 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1141.1248.1 >prot_H-canaliculatus_F_contig1141.1248.1 ID=prot_H-canaliculatus_F_contig1141.1248.1|Name=mRNA_H-canaliculatus_F_contig1141.1248.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=376bp
SSGGSVGALHRSVSNVMAGVSPSGDSYGGSSRGSRIGAGAFMRSESLDRE SQPDHDALIEEERRQQQQGGPSRRGSGGSIINDRVANNKGPIDRLLLLVD DAQSLSRRVLGNERQSARLGERLSALKTPLWQLQARVRTQAERCPDFIGR LMEQVSECLQVMLELTHPDWWNQIRRKHDASVFRDLNERLMCTVRGDRQF ETALRFPRAADEDRADRIVDFEHLQGVLEMHAERLEDSANEREELWRAIE SLRLAEPSDVTGFTEIDRAHLTFGAGMPVGGYSTCVEASWHGSRVAVKQL LPPNRTRLEMGGTSVGGGGGGGGWKTGGTPTRGVVWASASSAMRRELRVL QALRFEFLVPIYGACTAPPNGVCLVM back to topmRNA from alignment at H-canaliculatus_F_contig1141:24181..29394+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig1141.1248.1 ID=mRNA_H-canaliculatus_F_contig1141.1248.1|Name=mRNA_H-canaliculatus_F_contig1141.1248.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5214bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1141:24181..29394+ (Hapterophycus canaliculatus Oshoro5f female) AGCAGCGGCGGCAGTGTAGGTGCGCTTCACCGGAGCGTCTCGAACGTCAT
GGCCGGCGTCAGCCCATCGGGAGACTCCTACGGCGGGAGCAGCAGGGGCT
CGCGCATCGGGGCGGGCGCTTTCATGCGCTCCGAGTCGCTGGATCGAGAG
TCGCAGCCGGACCACGATGCGCTTATCGAAGAGGAGCGGCGACAACAGCA
ACAGGGCGGTCCCTCCCGGAGAGGCTCCGGCGGTAGTATCATCAACGACC
GCGTGGCCAACAACAAGGGGCCGATCGACCGCCTCTTGCTGCTTGTCGAT
GATGCCCAGTCGCTCTCCCGCCGCGTACTCGGGAACGAGAGGCAGTCGGC
GCGGCTGGGGGAGAGGTTGTCGGCTCTCAAGACCCCCCTCTGGCAGCTCC
AGGCGAGGGTTCGCACGCAGGCCGAGAGGTGTCCTGATTTCATCGGCCGC
TTGATGGAGCAGGTGTCTGAGTGCCTTCAAGTGATGCTTGAGCTTACTCA
CCCCGATTGGTGGAACCAGATACGCCGAAAGGTGAGCGGGATAGGGCGGG
GGGGGTAAAGGAGAGAGGGTAAGGGTGGCCAGGGCAAGAGGAGAGGCATA
GACAAGCGCAGCACCTAAATCCCTTGATGAGTCTACGTACAGATTGGTTT
TCGTTCGTTTTATCATATTATACGTCTTGTATGTATAGTATTCCCTTCGT
AAATGGCGGCATAACTAATGCGTAACTCGCCGGTGTTTGGGTCTCTTCAT
CCCTGTTCACCAGAGCTCCGCTTATTGTCAGCCCACCACTACCTTTCCGC
CAACACGTCCTGTCGTACGGACACCGAACAGCCGGACGTCGCCCTTAAGT
TGATAAGAGCTCAGCCTCGCATGCGCGTACTCCAAGGGATCCAAATGAAA
GAAAGTAGGCACCAAGTGGCGGCGCGCACAAACAACCACACAGACACCAG
CGGAACGGAACGGGCAGCAAATGGGTTGACTAAAAACATACAAAGTCGAA
GTATTCCGTATCGTTCCACGTTGCATGTATGCATGAATCATGCGAAAGCA
GCTGATGCCTGGAAAACTGTTGCCCTCTTTTCTCTCCCATTCGGACCTCG
AGGAATACTCGTACTTCTTCCAAGATGTGGGGATCACGCTTCCTCGATCT
CGAATTTCTCGTGTGTATTCCGCGTGTCGAGTCCACGCACTCGCGCCCTC
GATTTCGCCCCTGTTGCGGATACAAACCACGACAGCAGGTACATGATACT
TGAGTCCTTGAAACCGTCGCCCTCCTTGTGATCTCTCGGCTCACTCGGGA
GAACGTGCAGTTGTGCAGATCTATCGAATGGTTTCTCACTCGCATGGCCG
CTCCGCGAGCCCGGTCTCCCTCACATCCCAACAGAAACAACGAAAAAAGA
AAAGAAGGGTGATACGAAACCAAGAAATTCATGAAGCATCCGCTCGGTGC
TAACGAACGCACAACGAACGCCGCCGACATGTCCAGCACGATGCGTCGGT
TTTTCGGGATCTTAACGAGCGGCTGATGTGCACGGTGAGGGGCGACCGCC
AGTTCGAGACCGCGCTGAGGTTTCCCCGTGCTGCGGACGAAGACAGAGCG
GACCGCATCGTCGACTTCGAACACCTGCAGGTAGGGACAAGCACCTTTTT
TTTTTTTCTTCGTATTTTTCCTCGTGGGTCGCCGCTCGCTGTCTTTTGGA
GGTGCGGGCGCGTCTCTCGGATTGGTCCTTGCGTCGGTCGATGATGTGCG
GCCGACCATAACATGAAGGCCCCCTCCTTCTCTCTCTCTCTCTCTCTCTC
TTTCTGTCTGTCTGTCTCCTTTTCGTCTCGGGGGATTTGACTTGAAACTG
TCTCGCTTCTATTGGATTGGAGGCAGGAGAGGGTGCAGGACGCGAAGAAA
AGTGCAGAAGTTCGCGGTTGAAACGCCCGGGGCCGCTCCCGCTGCCTCTG
CTGTCTGTGGGCGCTGGTCATTCTGCTTGTTCTCCATTTTAGTCATATCG
TAGTACTTCGAAGTACTGCTGTAGTACCGGAGTATATTTTTTCGACCAGA
GTAACAGAAGTAATCTACCTGCATCTTGCGCAAATCTCCACAAAACTGGA
GGCGTGATAGGTGGGTGCAAAACGAAGTCTTGCGTGCGTGCTCGTGGCTT
GCCCAAGGACGGTCCTCGGTATTGCCCCAATGCTCTGCTTGACGTAAGTA
TCCAGCAGCTAGCAGTGCTGGCAAAGCAGCGGCGATCCTCTTGCCGGCCG
CAGATACGGGACGGTACGTTGGTTGGTGGGCTTGAGAAGCTGAAATCTTC
GCAAGCTGCGACGACGCCTTGCTTTTGAAGGGCATCTACCAATAGGCGGA
AAGTGTCGAGAGACTCGCCCTTCACCCAGTCTCATGTGCTCCTCCTGCTG
TTCCGTGTTTATCTCATAGTTGTTCGTTCCTCTTTGTTTTCCTCCCCATG
GTCTCTTTCGCGTCAAACGTGACTATCACGTATGAGCGGACGCCAACTAT
CGGCTGATGGGTAGGGATGGGCGCGGGTGTTTTTATCGACCACGAAGTAG
CGTCTCTACGCCTCTACACAGCGTGGATCGGGACTAGAGACGTTCGTGTC
TCCGTCGTGGACGGGTACGCCATTTCGTGCCTTTTTCTAGTGGTCAAACT
GCAGCTTCCAACGACTTTCCCCGCTTAATCCTCTCTCAAGATGAAAAGGA
GATAGGGAGCATAGGGCGCAGGCAATGCCTCGAGTTTGGCCTTGGTATGC
TCTTGGTTCATTTTCTTCAGAAGGATTCGAGATGCCGCTTCTCCAAAGTT
GTCGCAAGATTGTCCAGGCTTCACGGGGGCATCTTCTCTCCGGATCAATC
CACTTGATTCAAGCATCTTCACGAACGAAGCCACAGCCACCCGACCAAGT
TCGAGGCCATTCGGGTGCACGGGTGTGGTGTGGTGCACTCTTCGTTGCCT
CCACGTTACTCTCTCTATTTTCGTCTTTCCAGGCGTTTCATACCCCCTGG
GCGACGTACGCCACTGCTTGCGAGCGCCGTACAAACATCGCACCGCGCAA
AACACCCGACAACAAAGGCAACAACGACGACGACAACAACAATAACTGCC
GACAACTGCATGAAAATAATACGTGCCGACGACAGGGGGTGTTGGAAATG
CACGCGGAGAGGCTCGAGGACAGCGCGAACGAGAGGGAGGAGCTGTGGAG
GGCGATCGAAAGCCTGAGGCTCGCCGAGCCGTCGGACGTCACCGGCTTCA
CGGAGATCGACCGCGCGCACCTCACGTTTGGCGCTGGCATGCCCGTGGTG
AGGGACGATTGCAGCGTGGATCGGTAGAGAGATTAATGCATGAATGCCCT
AGGTCTTGCCGGGATGTGGCCGCGTGCACCTCGCCGATTTTGCAACGAAC
GAGGGCACGTGCATGGGCTGAGGACGAGGGAGTGCGGCATCTGCGAAACG
TTCATTTGGTGCGGTCTGTTTCTTAAATTGGTGGGGCAGCAGAGTTCGAC
AAGTTTGAAAGCTGGTGCGGGTGTGACTCCCCAATTCCCAGAACCTCGCG
CAGCCTGTGGGCCTGTCCTACACAGGCGAAGATACGGTATGGACACGTAA
GCACGAAGAAGCCTCCAACCTAAAGAGCAGCCTGACCCTTGTCAGGTGCC
ATCCTTCGACCCGCGCGCGTCATCTCCCTCCGCCCCCATTTGTCGCCCCA
CAAACGTTGGCGAATGAAACAAACAAAAGGGCGGCTACAGTACCTGCGTC
GAAGCGTCATGGCACGGCTCGCGAGTGGCCGTGAAGCAGCTGCTCCCGCC
CAACCGGACCCGGTTAGAAATGGGCGGGACGAGCGTCGGCGGGGGGGGCG
GGGGCGGCGGGTGGAAAACCGGCGGCACCCCTACAAGAGGGGTGGTGTGG
GCCTCGGCGTCCTCTGCGATGCGGCGGGAGCTTCGGGTGCTGCAGGCGCT
GCGGTTCGAATTCTTGGTGCCCATTTACGGGGTGAGAAAGGAGAGGAGGA
GAAAGATGGATCGTGCCTGCGGAAGGTGTCGCTGCCCACTCGTGCTGTTT
GCGGGGGGGGGGCGGTGTAGCTGGCGATGTCTGTAGCTTCGTTTCGTCCC
TGTCACCGTTGCGGTGATGTGATGGCCGGGTGTGCGCTCTGCCGTTCTTT
TCGGCGGCCGTCGCAGCGCGGGTAGGGGAGCGCCCGTGCCGTGCCGCCTT
TGTTCGTCCTCGCTGCTACCGCTCTGGCAGCTCGAGGCCAGCGCAGAGCC
GTCTTCGCGCATGCGTATCTTCCGGTCGGAGCAACTCCTTTTCGCATACA
TGGGAAAAGCGTTTGGCCGTGGCGCTTGCATGGTAGGCCATGTCAGGGTG
GGCCTGACAGCAGGCTCTCACACCGCAGAAACTCGCCCTCACAGGCATGT
CAGCAAATCGTCGGAGAAGCGCCCTCGCCTTGACGAGCTGGCAAGCGTTT
TTTCGCCGGGTTTTGGTTTCCGTCGGCGGACAACAAGTGCAGACAAATGA
AAGATCTGGCCGCTGAGAGCACCGTTGTTGTAAACGACAGAAAGAGGCAG
ACAGGATGAGCCTGTGTCGTGAAGAGATACGAGGCCGGTGGCAGCTTGTT
AGAATCGAATCTTTGGAGGTAAGACAAAGAGCGCTCCTGTGTAGGAGCTC
CAGGGAATCGGTGAAAGGGTGGGGTTGTTTTCGTATCACGATGAGGAGAG
TGGAGCGCTTTTGCGATTTCTTGCGTCCTTGGTAATACGGTAACAAAAGC
GAGCCGACTCAACAGCCCGACCGACTACGACAAGCGATGTGCCTGACGTT
CCAACAAATAACACGTGTGCCATCAAATACTAGTAGAAAGTCGAACAAAC
ATGAAAGAAAAGTAACGAAAATGCGGTCTGATGTTTGTGTTTTTGCAGGG
CTTCAGGACAAGGCTTGCCCCCGATACTTCCGTGCATGCCCGTGCCATGT
ACCGCTGACGTAGGGTAAGCGTGTAGCAGTGTTTGTGTTCCGCGACAGGT
GTGAAAATGCTCTCCAGCCTACCATGCAGCCTTCCACGTCCGCCCCAACA
GAGGCAAAGCCGACAAATCAGCTCGCCCTGGCGACACGCAGCACCACGCC
CCCGCCATGCCGAGCCAATCCTAACCCGAAACACCCGTATGCACGCGCAC
ACCTCGCTAACGATTCAAAACCCAGGCGTGCACGGCGCCTCCCAACGGCG
TGTGCCTCGTGATG back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig1141:24181..29394+ >mRNA_H-canaliculatus_F_contig1141.1248.1 ID=mRNA_H-canaliculatus_F_contig1141.1248.1|Name=mRNA_H-canaliculatus_F_contig1141.1248.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2256bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1141:24181..29394+ (Hapterophycus canaliculatus Oshoro5f female) AGCAGCGGCGGCAGTGTAGGTGCGCTTCACCGGAGCGTCTCGAACGTCAT GGCCGGCGTCAGCCCATCGGGAGACTCCTACGGCGGGAGCAGCAGGGGCT CGCGCATCGGGGCGGGCGCTTTCATGCGCTCCGAGTCGCTGGATCGAGAG TCGCAGCCGGACCACGATGCGCTTATCGAAGAGGAGCGGCGACAACAGCA ACAGGGCGGTCCCTCCCGGAGAGGCTCCGGCGGTAGTATCATCAACGACC GCGTGGCCAACAACAAGGGGCCGATCGACCGCCTCTTGCTGCTTGTCGAT GATGCCCAGTCGCTCTCCCGCCGCGTACTCGGGAACGAGAGGCAGTCGGC GCGGCTGGGGGAGAGGTTGTCGGCTCTCAAGACCCCCCTCTGGCAGCTCC AGGCGAGGGTTCGCACGCAGGCCGAGAGGTGTCCTGATTTCATCGGCCGC TTGATGGAGCAGGTGTCTGAGTGCCTTCAAGTGATGCTTGAGCTTACTCA CCCCGATTGGTGGAACCAGATACGCCGAAAGAGCAGCGGCGGCAGTGTAG GTGCGCTTCACCGGAGCGTCTCGAACGTCATGGCCGGCGTCAGCCCATCG GGAGACTCCTACGGCGGGAGCAGCAGGGGCTCGCGCATCGGGGCGGGCGC TTTCATGCGCTCCGAGTCGCTGGATCGAGAGTCGCAGCCGGACCACGATG CGCTTATCGAAGAGGAGCGGCGACAACAGCAACAGGGCGGTCCCTCCCGG AGAGGCTCCGGCGGTAGTATCATCAACGACCGCGTGGCCAACAACAAGGG GCCGATCGACCGCCTCTTGCTGCTTGTCGATGATGCCCAGTCGCTCTCCC GCCGCGTACTCGGGAACGAGAGGCAGTCGGCGCGGCTGGGGGAGAGGTTG TCGGCTCTCAAGACCCCCCTCTGGCAGCTCCAGGCGAGGGTTCGCACGCA GGCCGAGAGGTGTCCTGATTTCATCGGCCGCTTGATGGAGCAGGTGTCTG AGTGCCTTCAAGTGATGCTTGAGCTTACTCACCCCGATTGGTGGAACCAG ATACGCCGAAAGCACGATGCGTCGGTTTTTCGGGATCTTAACGAGCGGCT GATGTGCACGGTGAGGGGCGACCGCCAGTTCGAGACCGCGCTGAGGTTTC CCCGTGCTGCGGACGAAGACAGAGCGGACCGCATCGTCGACTTCGAACAC CTGCAGCACGATGCGTCGGTTTTTCGGGATCTTAACGAGCGGCTGATGTG CACGGTGAGGGGCGACCGCCAGTTCGAGACCGCGCTGAGGTTTCCCCGTG CTGCGGACGAAGACAGAGCGGACCGCATCGTCGACTTCGAACACCTGCAG GGGGTGTTGGAAATGCACGCGGAGAGGCTCGAGGACAGCGCGAACGAGAG GGAGGAGCTGTGGAGGGCGATCGAAAGCCTGAGGCTCGCCGAGCCGTCGG ACGTCACCGGCTTCACGGAGATCGACCGCGCGCACCTCACGTTTGGCGCT GGCATGCCCGTGGGGGTGTTGGAAATGCACGCGGAGAGGCTCGAGGACAG CGCGAACGAGAGGGAGGAGCTGTGGAGGGCGATCGAAAGCCTGAGGCTCG CCGAGCCGTCGGACGTCACCGGCTTCACGGAGATCGACCGCGCGCACCTC ACGTTTGGCGCTGGCATGCCCGTGGGCGGCTACAGTACCTGCGTCGAAGC GTCATGGCACGGCTCGCGAGTGGCCGTGAAGCAGCTGCTCCCGCCCAACC GGACCCGGTTAGAAATGGGCGGGACGAGCGTCGGCGGGGGGGGCGGGGGC GGCGGGTGGAAAACCGGCGGCACCCCTACAAGAGGGGTGGTGTGGGCCTC GGCGTCCTCTGCGATGCGGCGGGAGCTTCGGGTGCTGCAGGCGCTGCGGT TCGAATTCTTGGTGCCCATTTACGGGGGCGGCTACAGTACCTGCGTCGAA GCGTCATGGCACGGCTCGCGAGTGGCCGTGAAGCAGCTGCTCCCGCCCAA CCGGACCCGGTTAGAAATGGGCGGGACGAGCGTCGGCGGGGGGGGCGGGG GCGGCGGGTGGAAAACCGGCGGCACCCCTACAAGAGGGGTGGTGTGGGCC TCGGCGTCCTCTGCGATGCGGCGGGAGCTTCGGGTGCTGCAGGCGCTGCG GTTCGAATTCTTGGTGCCCATTTACGGGGCGTGCACGGCGCCTCCCAACG GCGTGTGCCTCGTGATGGCGTGCACGGCGCCTCCCAACGGCGTGTGCCTC GTGATG back to top
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