mRNA_H-canaliculatus_F_contig11409.1244.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11409.1244.1
Unique NamemRNA_H-canaliculatus_F_contig11409.1244.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig11409.1244.1 vs. uniprot
Match: A0A6H5JKU1_9PHAE (ERD protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKU1_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 2.380e-36
Identity = 71/91 (78.02%), Postives = 81/91 (89.01%), Query Frame = 1
Query:   13 ETFNMPYLPTQVLHGAAPGRMAAQESPEPRDIYWFNTRVTQVQRKRRRILVESFLLLLYVFYVVPVTLLYLLLSEDSITSYANWIADLYDD 285
            +TF+   +  QVLHGAAPGRMAA+ESPE RDIYWFNTRVTQ QR RRRILVE FL +LYVFYVVPVTLLYLLLSEDS+TSYA+W+A+LYD+
Sbjct:  533 KTFSAATVARQVLHGAAPGRMAAEESPEARDIYWFNTRVTQNQRNRRRILVEVFLGVLYVFYVVPVTLLYLLLSEDSVTSYADWVAELYDN 623          
BLAST of mRNA_H-canaliculatus_F_contig11409.1244.1 vs. uniprot
Match: A0A835Z3W6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3W6_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.280e-14
Identity = 39/87 (44.83%), Postives = 60/87 (68.97%), Query Frame = 1
Query:   13 ETFNMPYLPTQVLHGAAPGRMAAQESPEPRDIYWFNTRVTQVQRKRRRILVESFLLLLYVFYVVPVTLLYLLLSEDSITSYANWIAD 273
            +TF    +  QV H    GR+ A E+PEPRD+YW N  + +  R RRR+LV++FL +LYVF+VVPVT LYL+ S +++++++  + D
Sbjct:  374 KTFAGATIARQVHHTNKVGRLRAYEAPEPRDVYWQNAHIRRATRLRRRVLVDAFLAVLYVFWVVPVTGLYLVFSTEALSAHSALLRD 460          
BLAST of mRNA_H-canaliculatus_F_contig11409.1244.1 vs. uniprot
Match: A0A7S3NIB5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIB5_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.020e-12
Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:   40 TQVLHGAAPGRMAAQESPEPRDIYWFNTRVTQVQRKRRRILVESFLLLLYVFYVVPVTLLYLLLSEDSITSYANW 264
            TQV H A PG M A  +PEPRDI+W N R++Q  R  RR++    ++LL +FYVVPVTL+ L+LSE +I   A W
Sbjct:  477 TQVFHAATPGGMIAAIAPEPRDIFWPNLRLSQPTRATRRVIANILVVLLLIFYVVPVTLISLVLSEQAIL--ARW 549          
BLAST of mRNA_H-canaliculatus_F_contig11409.1244.1 vs. uniprot
Match: F0Y5Y8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5Y8_AURAN)

HSP 1 Score: 70.9 bits (172), Expect = 3.580e-12
Identity = 33/82 (40.24%), Postives = 54/82 (65.85%), Query Frame = 1
Query:   40 TQVLHGAAPGRMAAQESPEPRDIYWFNTRVTQVQRKRRRILVESFLLLLYVFYVVPVTLLYLLLSEDSITSYANWIADLYDD 285
            TQV H A PG M A  +PEPRD++W N  ++  QR  RR++ +  ++LL +FY++PVTL+ L+ SE ++ ++   + +L  D
Sbjct:  761 TQVFHAATPGGMVASMAPEPRDVFWKNAELSGKQRTTRRVVADCLVVLLLIFYIIPVTLISLVFSEQALKAHWPALKELASD 842          
BLAST of mRNA_H-canaliculatus_F_contig11409.1244.1 vs. uniprot
Match: A0A7S2NWT0_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NWT0_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.670e-11
Identity = 36/96 (37.50%), Postives = 60/96 (62.50%), Query Frame = 1
Query:    7 LLETFNMPYLPTQVLHGAAPGRMAAQESPEPRDIYWFNTRVTQVQRKRRRILVESFLLLLYVFYVVPVTLLYLLLSEDSITSYANWIADLYDDVSA 294
            ++ TF    +  Q +H + PG M    +PEPRD+ W N  V++  +K R ++ ++ +LLL  FY++PV ++ LL+SE+++ SY+  IA L D  SA
Sbjct:  311 VMRTFTASTIAIQSMHSSKPGSMQVSTAPEPRDLLWENIYVSKGAKKTRSLIADALVLLLISFYIIPVAIISLLVSENALVSYSPRIAQL-DQASA 405          
BLAST of mRNA_H-canaliculatus_F_contig11409.1244.1 vs. uniprot
Match: A0A7S1B8V0_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B8V0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 7.140e-10
Identity = 35/96 (36.46%), Postives = 58/96 (60.42%), Query Frame = 1
Query:    7 LLETFNMPYLPTQVLHGAAPGRMAAQESPEPRDIYWFNTRVTQVQRKRRRILVESFLLLLYVFYVVPVTLLYLLLSEDSITSYANWIADLYDDVSA 294
            ++ TF    +  Q +H + PG M  Q +PEPRDI W N  V++  ++ RR L + F+ +L  FY+VPV L+ ++LSE ++ +++  +  L D  SA
Sbjct:  641 VMRTFTASTIAIQSMHSSKPGSMRVQTAPEPRDILWDNIYVSKGAKRTRRYLADIFVHVLIFFYIVPVALVSMVLSEQALVAFSPRLEQL-DQASA 735          
BLAST of mRNA_H-canaliculatus_F_contig11409.1244.1 vs. uniprot
Match: A0A7S4K333_9STRA (Hypothetical protein (Fragment) n=3 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K333_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 9.750e-10
Identity = 34/90 (37.78%), Postives = 55/90 (61.11%), Query Frame = 1
Query:    7 LLETFNMPYLPTQVLHGAAPGRMAAQESPEPRDIYWFNTRVTQVQRKRRRILVESFLLLLYVFYVVPVTLLYLLLSEDSITSYANWIADL 276
            ++ TF    +  Q +H + PG M    +PEPRDI W N  +++  ++ R I+ E+ +LL+  FYVVPV L+ LL+SE ++ S +  +A L
Sbjct:  641 VMRTFTASTIAIQSMHSSKPGSMQVTTAPEPRDILWGNVYLSKGAKRTRSIIGEALILLIITFYVVPVALVSLLVSESALISSSPRLAQL 730          
BLAST of mRNA_H-canaliculatus_F_contig11409.1244.1 vs. uniprot
Match: A0A1E7ERH2_9STRA (DUF221-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ERH2_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 8.270e-9
Identity = 32/90 (35.56%), Postives = 53/90 (58.89%), Query Frame = 1
Query:    7 LLETFNMPYLPTQVLHGAAPGRMAAQESPEPRDIYWFNTRVTQVQRKRRRILVESFLLLLYVFYVVPVTLLYLLLSEDSITSYANWIADL 276
            ++ TF    +  Q +H + PG M    +PEPRD+ W N  V++   + R IL E  ++L+  FY++PV L+ LL+SE ++ S +  +A L
Sbjct:  203 VMRTFAAATIAIQSMHSSKPGAMQVSSAPEPRDVLWSNVYVSKGATRTRSILGEFLVILIISFYIIPVALVSLLVSEQALVSSSPRLAQL 292          
BLAST of mRNA_H-canaliculatus_F_contig11409.1244.1 vs. uniprot
Match: A0A7S1ZBN9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZBN9_TRICV)

HSP 1 Score: 60.1 bits (144), Expect = 2.130e-8
Identity = 31/90 (34.44%), Postives = 55/90 (61.11%), Query Frame = 1
Query:    7 LLETFNMPYLPTQVLHGAAPGRMAAQESPEPRDIYWFNTRVTQVQRKRRRILVESFLLLLYVFYVVPVTLLYLLLSEDSITSYANWIADL 276
            +++TF    +  Q +H + PG M    +PEPRDI W N  +++  ++ R+ + E+ + L+  FY+VPV L+ LL+SE ++ S +  +A L
Sbjct:   96 VMKTFTASTIAIQSMHSSRPGSMQVTTAPEPRDILWNNVYLSKGAKRTRQYIGETLIHLIITFYIVPVALVSLLVSESALISSSPRLAQL 185          
BLAST of mRNA_H-canaliculatus_F_contig11409.1244.1 vs. uniprot
Match: A0A1X2GGB0_9FUNG (DUF221-domain-containing protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GGB0_9FUNG)

HSP 1 Score: 60.1 bits (144), Expect = 2.180e-8
Identity = 35/90 (38.89%), Postives = 55/90 (61.11%), Query Frame = 1
Query:   16 TFNMPY---LPTQVLHGAAPGRMAAQESPEPRDIYWFNTRVTQVQRKRRRILVESFLLLLYVFYVVPVTLLYLLLSEDSITSYANWIADL 276
            TF  P    + +QVL  + P R+ AQ +PEPRD+ W N  +   +R  R++L+   L++L VF+VVP+++   L SE S+ +Y  W+ DL
Sbjct:  390 TFEEPMSASIASQVLIDSTPFRLNAQLAPEPRDVLWENIAMHGRERYIRKVLMLGILVVLAVFWVVPISIFSALTSESSLRNYFPWLMDL 479          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11409.1244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JKU1_9PHAE2.380e-3678.02ERD protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A835Z3W6_9STRA3.280e-1444.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3NIB5_9STRA1.020e-1252.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
F0Y5Y8_AURAN3.580e-1240.24Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2NWT0_9STRA1.670e-1137.50Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S1B8V0_9STRA7.140e-1036.46Hypothetical protein n=3 Tax=Corethron hystrix Tax... [more]
A0A7S4K333_9STRA9.750e-1037.78Hypothetical protein (Fragment) n=3 Tax=Odontella ... [more]
A0A1E7ERH2_9STRA8.270e-935.56DUF221-domain-containing protein (Fragment) n=1 Ta... [more]
A0A7S1ZBN9_TRICV2.130e-834.44Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A1X2GGB0_9FUNG2.180e-838.89DUF221-domain-containing protein n=1 Tax=Hesseltin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11409contigH-canaliculatus_F_contig11409:121..417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.1
Seed ortholog evalue1.4e-31
Seed eggNOG ortholog2880.D8LQB2
KEGG koko:K21989
EggNOG free text desc.ion transport
EggNOG OGsCOG5594@1,KOG1134@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal anchor
Exons1
Model size297
Cds size297
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928824.8451781-CDS-H-canaliculatus_F_contig11409:120..4171622928824.8451781-CDS-H-canaliculatus_F_contig11409:120..417Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11409 121..417 +
1696845579.3195417-CDS-H-canaliculatus_F_contig11409:120..4171696845579.3195417-CDS-H-canaliculatus_F_contig11409:120..417Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11409 121..417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11409.1244.1prot_H-canaliculatus_F_contig11409.1244.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11409 121..417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11409.1244.1

>prot_H-canaliculatus_F_contig11409.1244.1 ID=prot_H-canaliculatus_F_contig11409.1244.1|Name=mRNA_H-canaliculatus_F_contig11409.1244.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=99bp
MDLLETFNMPYLPTQVLHGAAPGRMAAQESPEPRDIYWFNTRVTQVQRKR
RRILVESFLLLLYVFYVVPVTLLYLLLSEDSITSYANWIADLYDDVSA*
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mRNA from alignment at H-canaliculatus_F_contig11409:121..417+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11409.1244.1 ID=mRNA_H-canaliculatus_F_contig11409.1244.1|Name=mRNA_H-canaliculatus_F_contig11409.1244.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=297bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11409:121..417+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGATCTTCTCGAAACGTTCAACATGCCGTATCTGCCCACACAGGTGCT GCACGGTGCAGCCCCCGGGCGAATGGCCGCCCAGGAGTCCCCCGAGCCCC GCGACATCTACTGGTTCAACACTCGCGTGACGCAGGTGCAGCGCAAGCGC CGGCGGATCCTCGTGGAGTCGTTCCTGCTGCTGCTATACGTCTTCTACGT GGTCCCGGTGACGCTGCTGTACCTCCTGCTGTCGGAGGACTCCATTACGT CCTACGCGAATTGGATAGCGGACCTGTACGACGACGTGAGTGCTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11409:121..417+

>mRNA_H-canaliculatus_F_contig11409.1244.1 ID=mRNA_H-canaliculatus_F_contig11409.1244.1|Name=mRNA_H-canaliculatus_F_contig11409.1244.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=594bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11409:121..417+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGATCTTCTCGAAACGTTCAACATGCCGTATCTGCCCACACAGGTGCT
GCACGGTGCAGCCCCCGGGCGAATGGCCGCCCAGGAGTCCCCCGAGCCCC
GCGACATCTACTGGTTCAACACTCGCGTGACGCAGGTGCAGCGCAAGCGC
CGGCGGATCCTCGTGGAGTCGTTCCTGCTGCTGCTATACGTCTTCTACGT
GGTCCCGGTGACGCTGCTGTACCTCCTGCTGTCGGAGGACTCCATTACGT
CCTACGCGAATTGGATAGCGGACCTGTACGACGACGTGAGTGCTTGAATG
GATCTTCTCGAAACGTTCAACATGCCGTATCTGCCCACACAGGTGCTGCA
CGGTGCAGCCCCCGGGCGAATGGCCGCCCAGGAGTCCCCCGAGCCCCGCG
ACATCTACTGGTTCAACACTCGCGTGACGCAGGTGCAGCGCAAGCGCCGG
CGGATCCTCGTGGAGTCGTTCCTGCTGCTGCTATACGTCTTCTACGTGGT
CCCGGTGACGCTGCTGTACCTCCTGCTGTCGGAGGACTCCATTACGTCCT
ACGCGAATTGGATAGCGGACCTGTACGACGACGTGAGTGCTTGA
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