mRNA_H-canaliculatus_F_contig1139.1230.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1139.1230.1
Unique NamemRNA_H-canaliculatus_F_contig1139.1230.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1139.1230.1 vs. uniprot
Match: A0A6H5JK16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK16_9PHAE)

HSP 1 Score: 287 bits (735), Expect = 2.880e-76
Identity = 247/536 (46.08%), Postives = 289/536 (53.92%), Query Frame = 1 
Query:  430 SFKWSSKLSVSTALSKGTGKFKRRFKASVAETTAAALQELXXXXXXXXXXXXXXXXXXEN--PATTFFPPASPSXXXXXXXXXXXXPLSDAPPSFAAPA--------PVLRSAVAAAADATGSAAPGRHSPXXXXXXXXXXXXDNKDRALVFTSPEEFSPCLAARGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGTVGGGPGGFLKVTACSCNVGSIRIEVAGSKHDGIYNFLAKGLGDTIRDAXXXXXXKAFSEEIEKLVHTINEWIAEVWSGIPPESKQKPARVVCAAVRAKGLARQKGELYVKVRLLQKDGTQLQKRSTAAVGVVGYSFSS-------INTTVGSVARGGDKDREHEKDEERRGPCWVGLDNDLSMELPEEDPVDLSLVFEVWHSGTITNGIVGSTRRVPVVEIKPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEESDSVWLELDSGGMLMVKLAASELTAHRRRNSVNQPTDFDAAKTVSDAATSSSAELTDSQRTIRRW 1986
            S KWS+  S+STALSKGTGK KRR+KA+            XXXXXXX            +  PA++FF P SP               SDA  S + P+        P L SA   AA  T  A P   S             D    +LVF +  EFSP  AA                                  G   GG   FLKVTACSC VGSIRI+V GSKHDGIYNFLAKGLGDTIRDA      KAF+EEI KLV  IN+ IAE+WSG PP SK+   RVVCAAVRA+ L + K +LYVKVRL+++DGTQL+KRSTAAVG V  S +                                R PCWVGLDNDLSM LPEEDP  +SLVFEVWHSGT+ N +VGSTRRV + EI+PPS  XXXXXXXXXXXXXXXXXXXXXXXX                   + +++WL+LDSGG LMVKLA     AHRRR S ++P         +    ++ A   ++QR +RRW
Sbjct:  789 SSKWSTLKSMSTALSKGTGKIKRRWKATXXXXXXXXXXXXXXXXXXXLQRTGHHQPAPTSFQPASSFFHPPSPIDSSDK---------SDAFSSSSVPSTSRGRAITPTLPSAATTAAP-TPEALPSSRS-VPRLSSLGDNDADGGSGSLVFATAAEFSPLAAAAAARRRGSGLEGDDGEAGEVTP-----------SGISAGGTDEFLKVTACSCKVGSIRIDVDGSKHDGIYNFLAKGLGDTIRDAVREAVEKAFAEEIGKLVEGINDRIAEIWSGSPPVSKK--FRVVCAAVRAQDLPKGKTDLYVKVRLIKQDGTQLEKRSTAAVGAVATSAAMSIPXXXXXXXXXXXXXXXXXXXXXXXXXAPARNPCWVGLDNDLSMNLPEEDPDGMSLVFEVWHSGTLANALVGSTRRVTMSEIEPPSPAXXXXXXXXXXXXXXXXXXXXXXXXRDGGATPATVLKD-----SDLNTLWLDLDSGGKLMVKLAVFGRAAHRRRTSFHRPGGXXXXXXXAGIPEAALA-AAETQRALRRW 1294
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1139.1230.1 vs. uniprot
Match: D8LBX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX5_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 3.060e-69
Identity = 154/282 (54.61%), Postives = 172/282 (60.99%), Query Frame = 1 
Query:  829 DNKDRALVFTSPEEFSPCLAARGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGTVGGGPGGFLKVTACSCNVGSIRIEVAGSKHDGIYNFLAKGLGDTIRDAXXXXXXKAFSEEIEKLVHTINEWIAEVWSGIPPESKQKPARVVCAAVRAKGLARQKGELYVKVRLLQKDGTQLQKRSTAAVGVVGYSFSS-------INTTVGSVARGGDKDREHEKDEERRGPCWVGLDNDLSMELPEEDPVDLSLVFEVWHSGTITNGIVGSTRRVPVVEIKPPS 1653
            D    +LVF +  EFSP  AA                                  G  GG   GFLKVTACSC VGSIRIEV GSKHDGIYNFLAKGLGDTIRDA      KAF+EEI KLV  IN+ IAE+WSG  P SK+KPAR+VCAAVRA+GL + K +LYVKVRL++KDGTQL+KRSTAAVG V  S +                                R PCWVGLDNDLSM LPEEDP  LSLVFEVWHSGT+ N +VGSTRRV + EI+PPS
Sbjct:  939 DGGSGSLVFATAAEFSPLAAAAARRRGSGLEGDAREAGELPP------------SGISGGSADGFLKVTACSCKVGSIRIEVDGSKHDGIYNFLAKGLGDTIRDAVREAVEKAFAEEIGKLVEGINDRIAEIWSGSAPVSKKKPARLVCAAVRAQGLPKGKTDLYVKVRLIKKDGTQLEKRSTAAVGAVATSAAMSIPXXXXXXXXXXXXXXXXXXXXXXXXXAPARNPCWVGLDNDLSMNLPEEDPGRLSLVFEVWHSGTLANALVGSTRRVTMSEIEPPS 1208
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1139.1230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JK16_9PHAE2.880e-7646.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBX5_ECTSI3.060e-6954.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1139contigH-canaliculatus_F_contig1139:4..7331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-20_003640.1
Exons9
Model size3692
Cds size1992
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1139.1230.1prot_H-canaliculatus_F_contig1139.1230.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1139 4..5631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928822.1968713-CDS-H-canaliculatus_F_contig1139:3..4551622928822.1968713-CDS-H-canaliculatus_F_contig1139:3..455Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1139 4..455 +
1696845577.9389079-CDS-H-canaliculatus_F_contig1139:3..4551696845577.9389079-CDS-H-canaliculatus_F_contig1139:3..455Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1139 4..455 +
1622928822.2097092-CDS-H-canaliculatus_F_contig1139:1064..16411622928822.2097092-CDS-H-canaliculatus_F_contig1139:1064..1641Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1139 1065..1641 +
1696845577.9479613-CDS-H-canaliculatus_F_contig1139:1064..16411696845577.9479613-CDS-H-canaliculatus_F_contig1139:1064..1641Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1139 1065..1641 +
1622928822.2195704-CDS-H-canaliculatus_F_contig1139:2204..23111622928822.2195704-CDS-H-canaliculatus_F_contig1139:2204..2311Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1139 2205..2311 +
1696845577.9571266-CDS-H-canaliculatus_F_contig1139:2204..23111696845577.9571266-CDS-H-canaliculatus_F_contig1139:2204..2311Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1139 2205..2311 +
1622928822.229174-CDS-H-canaliculatus_F_contig1139:2726..28411622928822.229174-CDS-H-canaliculatus_F_contig1139:2726..2841Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1139 2727..2841 +
1696845577.966621-CDS-H-canaliculatus_F_contig1139:2726..28411696845577.966621-CDS-H-canaliculatus_F_contig1139:2726..2841Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1139 2727..2841 +
1622928822.240427-CDS-H-canaliculatus_F_contig1139:3262..33401622928822.240427-CDS-H-canaliculatus_F_contig1139:3262..3340Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1139 3263..3340 +
1696845577.9765868-CDS-H-canaliculatus_F_contig1139:3262..33401696845577.9765868-CDS-H-canaliculatus_F_contig1139:3262..3340Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1139 3263..3340 +
1622928822.2503307-CDS-H-canaliculatus_F_contig1139:3590..37771622928822.2503307-CDS-H-canaliculatus_F_contig1139:3590..3777Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1139 3591..3777 +
1696845577.9858408-CDS-H-canaliculatus_F_contig1139:3590..37771696845577.9858408-CDS-H-canaliculatus_F_contig1139:3590..3777Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1139 3591..3777 +
1622928822.2624657-CDS-H-canaliculatus_F_contig1139:4256..43121622928822.2624657-CDS-H-canaliculatus_F_contig1139:4256..4312Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1139 4257..4312 +
1696845577.9945083-CDS-H-canaliculatus_F_contig1139:4256..43121696845577.9945083-CDS-H-canaliculatus_F_contig1139:4256..4312Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1139 4257..4312 +
1622928822.2755468-CDS-H-canaliculatus_F_contig1139:4486..47501622928822.2755468-CDS-H-canaliculatus_F_contig1139:4486..4750Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1139 4487..4750 +
1696845578.0026317-CDS-H-canaliculatus_F_contig1139:4486..47501696845578.0026317-CDS-H-canaliculatus_F_contig1139:4486..4750Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1139 4487..4750 +
1622928822.290962-CDS-H-canaliculatus_F_contig1139:5475..56311622928822.290962-CDS-H-canaliculatus_F_contig1139:5475..5631Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1139 5476..5631 +
1696845578.012599-CDS-H-canaliculatus_F_contig1139:5475..56311696845578.012599-CDS-H-canaliculatus_F_contig1139:5475..5631Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1139 5476..5631 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928822.308435-UTR-H-canaliculatus_F_contig1139:5631..73311622928822.308435-UTR-H-canaliculatus_F_contig1139:5631..7331Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1139 5632..7331 +
1696845578.023669-UTR-H-canaliculatus_F_contig1139:5631..73311696845578.023669-UTR-H-canaliculatus_F_contig1139:5631..7331Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1139 5632..7331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1139.1230.1

>prot_H-canaliculatus_F_contig1139.1230.1 ID=prot_H-canaliculatus_F_contig1139.1230.1|Name=mRNA_H-canaliculatus_F_contig1139.1230.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=664bp
SVWLEGVSLSLSLDPGAGVDSLRRSPPPFPFTSASAASAPPPPSPSSSPV
PATSSSPVPATSPPSATPSSPPLPQHERAGGIPSEKAVYVEGDDAVCSGT
RKVAAAVAAAGTAVRVADAAVNAGGGGDGDGSSSSGGGRDGGGSFKWSSK
LSVSTALSKGTGKFKRRFKASVAETTAAALQELHQQQHQQHQQHQHQHTH
QENPATTFFPPASPSPPPPSPCPSPVPPLSDAPPSFAAPAPVLRSAVAAA
ADATGSAAPGRHSPPPSASSTLSPPDDNKDRALVFTSPEEFSPCLAARGR
RRRRRRSSDSGAGTEAAGPEGGDAGGSSPPEGTVGGGPGGFLKVTACSCN
VGSIRIEVAGSKHDGIYNFLAKGLGDTIRDAVREAVEKAFSEEIEKLVHT
INEWIAEVWSGIPPESKQKPARVVCAAVRAKGLARQKGELYVKVRLLQKD
GTQLQKRSTAAVGVVGYSFSSINTTVGSVARGGDKDREHEKDEERRGPCW
VGLDNDLSMELPEEDPVDLSLVFEVWHSGTITNGIVGSTRRVPVVEIKPP
SPAGAAAAATAAAAAAAGEGEGQGDNDSISASAVSAASAPSSASKEESDS
VWLELDSGGMLMVKLAASELTAHRRRNSVNQPTDFDAAKTVSDAATSSSA
ELTDSQRTIRRWC*
back to top

mRNA from alignment at H-canaliculatus_F_contig1139:4..7331+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1139.1230.1 ID=mRNA_H-canaliculatus_F_contig1139.1230.1|Name=mRNA_H-canaliculatus_F_contig1139.1230.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=7328bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1139:4..7331+ (Hapterophycus canaliculatus Oshoro5f female)
AGCGTCTGGCTCGAAGGCGTTTCGCTTTCCCTCTCCCTCGACCCGGGAGC
CGGCGTGGACTCCCTGCGACGGTCGCCCCCGCCGTTCCCTTTCACTTCTG
CTTCTGCTGCTTCGGCCCCGCCGCCGCCGTCGCCGTCGTCGTCTCCCGTC
CCCGCGACGTCGTCGTCTCCCGTCCCCGCGACGTCGCCGCCGTCGGCCAC
GCCAAGCTCGCCACCCCTGCCGCAACACGAGCGTGCCGGCGGGATTCCGT
CGGAGAAGGCCGTGTACGTCGAGGGCGACGATGCGGTTTGTAGTGGCACC
AGGAAGGTGGCGGCGGCGGTGGCGGCGGCGGGGACGGCTGTGCGTGTCGC
CGATGCCGCCGTGAACGCTGGCGGTGGCGGTGATGGCGACGGCAGCAGCA
GCAGCGGTGGAGGCCGGGACGGCGGGGGTTCGTTCAAGTGGTCGTCGAAG
CTGTGAGGCGATGAATGTGGTGGAGGCTTTTTTGCTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTTCATGTCCGTGCTCAGCTGCGTTGCGTC
TATGGTTAGGTCGTTTATGCCATGGTGACCCATCTGGTCGTTGCCGGCGG
TCATAAATTGATTTCTCCCGATTGTTTGTTGTCCGTCCTGGCCCTTTGGT
CGTCGATATCGAGTCAAATCCAGTTGGTGGGCGGTGGAAATGCCGTCTAT
TCGTGTTTTGGCGGTTTTCGCAAGTCTCCGCGTGGCAAGCATTGACGCGC
AGAGAACCTGTTGGTAGCGCGAAGTGGCTGAGCGATGGGCGATGACGTAG
CAGGCCTTCAAACCTTGCGACGGTGCTCACCCAAGAAGATTCGCCGGATT
CGTAAATCGCTCAGCAGTCGAAACGCGGAAAGCTCGAGCGGGCTAACGAC
GCGCACAGATAACAGGGGCGGCACTCTGCCTCCACGCGATCTAGAACGCA
ATGCGCCACACCCTCCCCTAGCGTAACCACCGACTCGACCTCAACTCTTC
TGGGCTCGGTTCGCCTTTTCGTTTTTTTTCCTTGTGTTTTCGACCAAACG
ACGCGCAGGAGCTCCGTATCCACAGCGCTGTCGAAGGGCACCGGGAAGTT
CAAGCGCCGCTTCAAGGCTTCGGTGGCGGAGACGACGGCCGCGGCGCTGC
AGGAGCTCCACCAGCAGCAGCACCAGCAGCACCAGCAGCACCAGCACCAG
CACACGCACCAGGAGAACCCAGCCACCACCTTCTTCCCTCCTGCCTCCCC
TTCCCCCCCCCCTCCTTCTCCGTGCCCGTCCCCTGTGCCCCCTCTCTCCG
ACGCCCCGCCTTCTTTTGCGGCGCCGGCGCCTGTTTTGCGCTCGGCTGTC
GCCGCCGCCGCCGACGCCACCGGCTCCGCCGCGCCGGGACGCCACTCTCC
GCCGCCCTCCGCGTCGTCTACCTTGTCTCCCCCGGACGACAACAAGGACC
GCGCTTTGGTTTTCACATCCCCGGAAGAGTTTTCTCCGTGCTTGGCGGCA
AGGGGGAGGAGGAGGAGGAGGAGGAGGAGCAGTGATTCGGGGGCTGGTAC
GGAGGCGGCAGGACCGGAGGGCGGGGACGCGGGAGGTTCGTCCCCGCCTG
AGGGGACCGTTGGTGGCGGGCCCGGAGGCTTCTTGAAGGTGCCTGATGCG
TGGTGCGGGGTTCCTCTCAGACCCATCTATTCGTGTGCCCTTTTTTGTTC
TCTTGTCTTTCTACGGAAGGGGGGAGGGCTCGCCAGCCCTCGGAGCGCCG
CTAGTGACGCTTGGCACATGCTTTTGTCGCGTGTGCATGCATGTAGTCCA
TGTGCGAAATATGAGCTTGGGTTTGGTCGTTTCTGAATGTATGGCTGTGT
GCGTGCGTGCGGTCGGAGAGACGCCACGGCTTCCACCGGGACGCATTCCC
CTCATGCCCACTACCTTGAACAAAATGCGCTCATCCCCCCCCCCCTCACC
CCCCCGTGTGTGTGTGTGTAAGTCTCTCTCTGGCGGCTCCAGTTTGGCTC
TTTTCCTCTCCCGTCGCTTTTCAGATCTAAGAAAGGGTAACGTGATGCAT
CGACCGTGATCTTCAGGTCGTCCCCTGCGTGGCCTTGTTCATTTTCGTCT
TGTCTCTTGTTTGCGTTGCGTGGAGCTGAGCCCTCTCCCGCGCCCTCTCG
TCTGCTTCCATCCCACCGCGAAACGGATCGGACTCGTGGCTAAACGTCCA
GGTGACGGCCTGCAGCTGCAACGTGGGGTCAATCCGCATCGAAGTTGCCG
GGAGCAAGCACGATGGCATCTACAACTTCCTGGCCAAGGGTCTGGGCGAT
ACCATCCGGTGCGTGCGTTAAGGGGTCCATGGGGGTGGGCGTTGTGGAGA
GGGATCGGGCGGGGGCGTCGAGGGGTGCGCTGCGTTAACACGTGTCCGTG
GCGTGTTTTCACGGTATGCCGAATCCTCGGCACATCAGGATGATGCCGTC
TAGGCATTGGGAAGGTCGGGGGCCGAGATTAGGGTGTGGTTGACATGGGA
TACTCGTTTGGCATTTGCCGAGACCTGAATATCATTCTCCTACTACTATT
ACTGGCCTGGTTTGCCTGTTTGTCAGACCATCGCGTCATGCTGTGCTTAG
CTTACACCGTACAGGACAGCCTTCCCTTTCGCATACATCTGACGGGCTGT
GTCCGTCCGACTCCCGGTCACCATCTTCGTCTTTGGTGATGACACGTGTT
GTGGTGCGCTTGCGCCCGCTCAGCGACGCCGTGCGCGAAGCTGTCGAGAA
GGCGTTTTCCGAGGAGATCGAAAAGCTCGTCCACACCATCAACGAGTGGA
TCGCAGAGGTCTGGTCCGGGATTCCTCCCGAATCAAAGGTGTGATTGGCG
TTGGCGGTGGCGTTGGCGTCACCGTTGTTGTCGGTGGTGTTGGTGCTGGT
GCTGGTGCTGTTGTGCTGTTGCTGTTGCCTTGGGCAGTGTTTTGTTGTGG
TCGTTGGTGTTGTGATGTTGGTGTTGGTGTTGTGGTGGTGTTAGTGTTGT
GGTGGTGGTGGTGGTGTTGTGCTGGTGGTGGCAGTGGTCGTGGCAGTGGT
GGTGGGGACTGCTGCTGTGGTTTCGGTGGCGTTCGTCGCTGGCCCGTTCC
TTCAAATCGCGAGTACCGCTGCATGGCGCCCTCCACTCACTTTTGGCACA
CTTCACCGCATGCGGTCTGTTGCTTCAGCAAGCTAACCCTGTCCTTCCCC
CACACCCTCAAAAACGCCTCTCGGCCGCTGTCCTGTGTCTCTCGCCCCTT
CACGGAGAGCAGAAGCCCGCCAGGGTGGTATGTGCCGCCGTCCGCGCGAA
GGGCTTGGCGAGGCAAAAGGGAGAACTCTACGTCAAGGTATCGAGGGAGT
GCATGATGGACGCCTGCCGCCGCCCCGCTGCCGCAAAAAGTGGTGTCAAC
GTTTCGCAGCGGCTGCAGTAGAAGCAGGCAACGCTCCGTGAGAAACCTCT
GAAGCGTTCCCTTGTTCCCTTCCACGGCTTGGTCTCTCGCGGATCGCGTC
TCGGTTTTGCCGACCTCTCTTCAGCCGCCTTCCTTTTCCCACAGACACAC
AGAAACACGCACGGGCACGTATCACGCGTTCGGACAGGTGCGCCTGCTGC
AGAAAGACGGTACTCAGCTGCAGAAGCGCAGCACGGCTGCCGTCGGAGTT
GTCGGCTACTCGTTTTCCTCCATCAACACGACCGTCGGCAGCGTTGCCAG
GGGCGGCGATAAAGACAGGGAACACGAGAAGGACGAAGAGAGGCGGGGTC
CGTGCTGGGTAGGGTTGGATAACGGTGAGCTTCGCATGCCGTGCACGGGA
AGAGACAGGGTCCGTGCTGGGTAGGGTTGGATAACGGTGGACTTCGCATG
CGGTGCACGGGTCGTGGAATGCGTTGATCTTCGGCTTTGAGCGGGAGGCA
AAGGGTGAGGGGCATGCGTATTTTTTCCTCGGCGGAAGAAAACCGATCGC
TTCGTGACAAGGGATATCGGTAATGTCGCTCACAACGGCGGAAACGGTGT
GCCTGAGACTGGATCGGTAGGAGCACGGGAGGCAAACATGCTGCGTGAAG
AACAGGGCGGGGCTTTGCGCTTGTACTTGAATCATAGTCCAGAGTTGTGA
CCGATAGGTTAAGACCAGGGGATCAATGTGTGAGGACATTAGAAAGCCGC
GTCGATTGGTCGCGCCACTCTTCTCTTTCCCCACAAATCACTGTTTTCGG
CGATGCTCATTTTCCTCCTTCTCTGTCAACGATCAACGTCTGTGGTTTGG
TAGACCTGTCCATGGAGCTCCCGGAGGAAGATCCAGTCGACTTGAGCTTG
GTTTTTGAGGTCAGTGGATTGCTCTTCCTTTGGTGGAGGTGGTGGTGGTG
GTGGTGGTGGTTGTCGTAGTGGTGCTGATTCACAGCATACGCTACGCCCT
CACGAGCGCCGTGCATGTGGGTGGATACCCCAAGATTTTGCTCAGACGCC
GACAAGAACAAGAATCCCTGATTGCTCTTCCAGGTGTGGCACAGCGGCAC
GATCACCAACGGCATCGTCGGGTCCACGCGCCGCGTGCCGGTGGTCGAGA
TCAAACCGCCGTCCCCCGCAGGAGCAGCAGCAGCAGCGACAGCAGCAGCA
GCAGCAGCAGCAGGCGAAGGCGAAGGGCAGGGCGATAATGACAGCATTTC
TGCCTCCGCCGTATCCGCCGCCTCCGCCCCTAGCAGCGCGTCGAAGGAAG
AGTCGGACTCGGTCTGGTTGGAGTTGGACTCCGGGGGGATGCTGATGGTG
AGGGGGAAGGGCGACGTTAGGCGTGGAGGCGTGCGGGGGAGTATCATAGC
ATACTGATGTATAGCCCTCGGAAGGAGCAGCACGGTTCACCATCCGGGTT
AGGGTTGGGGTCATGGTGAGGAGCACTCTCGCCACGAGCGGATCCTGAGG
AAGGAGCGGCACGGTCGACGTCCGGGGGGACGTAGGGTAAATAATAGATA
CCGTTGTGGGATACTGCGCAACGTCATGGAGCAGCCATCTCGGGGGCCCC
GGAATATTTTGCAGTCGTTGAGCGACCAGGCCGAGGAAAGAGTCATTCGA
TTCTCTCTCGAACTTGATTTGCTCGCTCTGGTCTCTTGTCGCCATGTGGG
GTTTTGCTCGTCATCTCCGTCCCCTTAAGCCTGGCCGTTTACGCCCCGCC
CTTCGAAACGCCTCCCTCGCCTCACTATCAAGTAGATACCGCGCGCTTTG
TTTGATTTCGCCGGTTCGCCTCTTCCTTGCCGCGATTTGTCCGCCTCTTC
CTTGCCGCGATTTGCCCGCCTCTTCATTGCCGCGATCGGTCGCTTGTTTT
CCTTGGATTCGTTGGTTGAACCTGGTGGTCTCGAATCTGTGAACCGAACG
GCCGGGCATGACGTCGATCTTGGGCGTCCTTTTGAACGACGCGTTCTTGT
TGCGATGGTGACGACGACGGCGACGACGACGACGATGATGATGATGATGA
TGATGATGTTGGCCAAACGCAGGTGAAGCTTGCCGCGTCCGAGCTGACGG
CTCACCGGCGGCGCAACAGCGTAAATCAGCCGACAGACTTCGATGCCGCG
AAGACAGTGAGCGACGCTGCTACCTCCTCGTCAGCAGAGCTGACCGACAG
CCAGAGGACAATTCGCCGCTGGTGTTAGATGAAGAACCGCGATTGGAACA
TTCGTGGCAGATATGTGTAACAAGAGTCCAGCAGTAACGACTGCAGTTTT
GGCCGGCCATTCTGTCCAGGTCATGAGCACTGAACACAGGGGGGCTTCGT
TAGAGGCTTGTAATTTTGCCGCAAAACGGACGCAGGACTCGGGGATAGTT
GGTGGATTCAGGCTTGCTCAGATTTTGTTTGAGTTTTAGCTATGCACATG
AAAGTCAGGGTAGTTGGATTCGTCACTTCCCAAGCCTCTGTAAGTTTCCA
GATAATTTTACGTTCGTTTGTCGTTGTTGCTGCTGTTGCTGTTGCTGTTG
TGATTGTACTCATGCTAGAAGACGTTTATACCCTGGTACTCAGCAGCGGG
TGCGAAAAGAAAGGGGGGAAATAAGTGGATAAATCTGGAACACTTGCCGA
CGAAAAAAGTGGCCTCTATCTCAACGCGCGACGCCGGCCGATCTGATTTT
GGATGTCGATTTCGAGCCGCACGATCAGCGTCTCAGGGGATGGAAACGCA
ACATGTTCGCGATTCCTCCCGGACACCGTCGTAAAGCGCCGGCCGAACGA
AGCGATCAATGGCACAGCAGGTAGCAGGCAGTGGACCTATCGGGTCCTTC
AGCCGACCGCGGTGTAGTGGAACAAAGCTTTCGATCTCGCGCTGCACCGC
GGTTTCCAGAAGGAAAAGGGGGGAAGGAAGGAAGTGCCGCCCCTTCGCAA
TACAGGGGACTTTTTTTTTCCCAGGCTTCTCACCCGGTCGCGTTTCCCCC
TGGTGTAGATACAAACGGGCAAAGTTCCCTGCGTTTGGGACATGCCGCGG
CGGGTTTCCAGTGAGAGGCTGGTTGAGACCTTGGTGAGCGGCGTGCGTGG
CCAACCTTTTTCGTAGTCAGCGAAGCGCATGCGTGCATTGTTTGCATGCA
CGAGTGTTTATCCCGTCCATTCGGAGGGCGCTGTGTTGCGGGCTCGTCTC
GCGGAGTTTTGCCGTCTGTCGTGGCCTACAGGTGCGGTTTTGCGTTGGGC
GGGACGGATCCCCAAAGATGTTGAGGTGTCTTTTTTGTTGTAGTTGCTCT
GGTGTATGGGGTGGCGAAAAAGTTGCGTGTGTGCGCAGTTGAACCGATGA
GGAAAGGGCTGGACAGCGCTCCCACCCGAGGCAAAGATGTCCGACTTGTC
AGCGTTTTATTGGGGCCTTCACCAGGATTCCGGTCCAGGGATTCCAACTC
CGGGGACAGTATCGAGAGAAAATTGCAGGAGAGAGTCGGATTCGGGATTG
GTAGGCTGAAGTTGCGGTTCAGGGCCGACGCAGCGAAGATATACTTCGAC
ACGACCGGTCAGGGGCGGGGGGGCAATTTTTTGCAAGCGTTCGTTCGTGA
ACATGCCGTTCCCCGCGTTAGAGCGTCTATCGAGATCTGACTCGCTGCTG
CTGCTGCTGCTGGATCGGAAGCTTAGCGGCAAGAAATTGTCCTAGTGGGT
ACTTGTAGGAATGCCCAAGGGAGTGGGGGAAGGAAGGATGGGTCGAATCT
TCCGTGCCCCGTTTCTCCTTATCGATGGCGACTGGCGTTGCCAAATGGGG
GGGACGCTCTCTTGTGTCTTTTTGGTGTGTGTGTGTCTAGAGGAACCGAT
GAAACGATGAAACTGACCGAGGGAAACTCGCTTGCCGATCTTTCCGTCAT
TTCTCGAACACTTTGCGATCGATCCCTG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1139:4..7331+

>mRNA_H-canaliculatus_F_contig1139.1230.1 ID=mRNA_H-canaliculatus_F_contig1139.1230.1|Name=mRNA_H-canaliculatus_F_contig1139.1230.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3984bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1139:4..7331+ (Hapterophycus canaliculatus Oshoro5f female)
AGCGTCTGGCTCGAAGGCGTTTCGCTTTCCCTCTCCCTCGACCCGGGAGC
CGGCGTGGACTCCCTGCGACGGTCGCCCCCGCCGTTCCCTTTCACTTCTG
CTTCTGCTGCTTCGGCCCCGCCGCCGCCGTCGCCGTCGTCGTCTCCCGTC
CCCGCGACGTCGTCGTCTCCCGTCCCCGCGACGTCGCCGCCGTCGGCCAC
GCCAAGCTCGCCACCCCTGCCGCAACACGAGCGTGCCGGCGGGATTCCGT
CGGAGAAGGCCGTGTACGTCGAGGGCGACGATGCGGTTTGTAGTGGCACC
AGGAAGGTGGCGGCGGCGGTGGCGGCGGCGGGGACGGCTGTGCGTGTCGC
CGATGCCGCCGTGAACGCTGGCGGTGGCGGTGATGGCGACGGCAGCAGCA
GCAGCGGTGGAGGCCGGGACGGCGGGGGTTCGTTCAAGTGGTCGTCGAAG
CTAGCGTCTGGCTCGAAGGCGTTTCGCTTTCCCTCTCCCTCGACCCGGGA
GCCGGCGTGGACTCCCTGCGACGGTCGCCCCCGCCGTTCCCTTTCACTTC
TGCTTCTGCTGCTTCGGCCCCGCCGCCGCCGTCGCCGTCGTCGTCTCCCG
TCCCCGCGACGTCGTCGTCTCCCGTCCCCGCGACGTCGCCGCCGTCGGCC
ACGCCAAGCTCGCCACCCCTGCCGCAACACGAGCGTGCCGGCGGGATTCC
GTCGGAGAAGGCCGTGTACGTCGAGGGCGACGATGCGGTTTGTAGTGGCA
CCAGGAAGGTGGCGGCGGCGGTGGCGGCGGCGGGGACGGCTGTGCGTGTC
GCCGATGCCGCCGTGAACGCTGGCGGTGGCGGTGATGGCGACGGCAGCAG
CAGCAGCGGTGGAGGCCGGGACGGCGGGGGTTCGTTCAAGTGGTCGTCGA
AGCTCTCCGTATCCACAGCGCTGTCGAAGGGCACCGGGAAGTTCAAGCGC
CGCTTCAAGGCTTCGGTGGCGGAGACGACGGCCGCGGCGCTGCAGGAGCT
CCACCAGCAGCAGCACCAGCAGCACCAGCAGCACCAGCACCAGCACACGC
ACCAGGAGAACCCAGCCACCACCTTCTTCCCTCCTGCCTCCCCTTCCCCC
CCCCCTCCTTCTCCGTGCCCGTCCCCTGTGCCCCCTCTCTCCGACGCCCC
GCCTTCTTTTGCGGCGCCGGCGCCTGTTTTGCGCTCGGCTGTCGCCGCCG
CCGCCGACGCCACCGGCTCCGCCGCGCCGGGACGCCACTCTCCGCCGCCC
TCCGCGTCGTCTACCTTGTCTCCCCCGGACGACAACAAGGACCGCGCTTT
GGTTTTCACATCCCCGGAAGAGTTTTCTCCGTGCTTGGCGGCAAGGGGGA
GGAGGAGGAGGAGGAGGAGGAGCAGTGATTCGGGGGCTGGTACGGAGGCG
GCAGGACCGGAGGGCGGGGACGCGGGAGGTTCGTCCCCGCCTGAGGGGAC
CGTTGGTGGCGGGCCCGGAGGCTTCTTGAAGCTCCGTATCCACAGCGCTG
TCGAAGGGCACCGGGAAGTTCAAGCGCCGCTTCAAGGCTTCGGTGGCGGA
GACGACGGCCGCGGCGCTGCAGGAGCTCCACCAGCAGCAGCACCAGCAGC
ACCAGCAGCACCAGCACCAGCACACGCACCAGGAGAACCCAGCCACCACC
TTCTTCCCTCCTGCCTCCCCTTCCCCCCCCCCTCCTTCTCCGTGCCCGTC
CCCTGTGCCCCCTCTCTCCGACGCCCCGCCTTCTTTTGCGGCGCCGGCGC
CTGTTTTGCGCTCGGCTGTCGCCGCCGCCGCCGACGCCACCGGCTCCGCC
GCGCCGGGACGCCACTCTCCGCCGCCCTCCGCGTCGTCTACCTTGTCTCC
CCCGGACGACAACAAGGACCGCGCTTTGGTTTTCACATCCCCGGAAGAGT
TTTCTCCGTGCTTGGCGGCAAGGGGGAGGAGGAGGAGGAGGAGGAGGAGC
AGTGATTCGGGGGCTGGTACGGAGGCGGCAGGACCGGAGGGCGGGGACGC
GGGAGGTTCGTCCCCGCCTGAGGGGACCGTTGGTGGCGGGCCCGGAGGCT
TCTTGAAGGTGACGGCCTGCAGCTGCAACGTGGGGTCAATCCGCATCGAA
GTTGCCGGGAGCAAGCACGATGGCATCTACAACTTCCTGGCCAAGGGTCT
GGGCGATACCATCCGGTGACGGCCTGCAGCTGCAACGTGGGGTCAATCCG
CATCGAAGTTGCCGGGAGCAAGCACGATGGCATCTACAACTTCCTGGCCA
AGGGTCTGGGCGATACCATCCGCGACGCCGTGCGCGAAGCTGTCGAGAAG
GCGTTTTCCGAGGAGATCGAAAAGCTCGTCCACACCATCAACGAGTGGAT
CGCAGAGGTCTGGTCCGGGATTCCTCCCGAATCAAAGCGACGCCGTGCGC
GAAGCTGTCGAGAAGGCGTTTTCCGAGGAGATCGAAAAGCTCGTCCACAC
CATCAACGAGTGGATCGCAGAGGTCTGGTCCGGGATTCCTCCCGAATCAA
AGCAGAAGCCCGCCAGGGTGGTATGTGCCGCCGTCCGCGCGAAGGGCTTG
GCGAGGCAAAAGGGAGAACTCTACGTCAAGCAGAAGCCCGCCAGGGTGGT
ATGTGCCGCCGTCCGCGCGAAGGGCTTGGCGAGGCAAAAGGGAGAACTCT
ACGTCAAGGTGCGCCTGCTGCAGAAAGACGGTACTCAGCTGCAGAAGCGC
AGCACGGCTGCCGTCGGAGTTGTCGGCTACTCGTTTTCCTCCATCAACAC
GACCGTCGGCAGCGTTGCCAGGGGCGGCGATAAAGACAGGGAACACGAGA
AGGACGAAGAGAGGCGGGGTCCGTGCTGGGTAGGGTTGGATAACGGTGCG
CCTGCTGCAGAAAGACGGTACTCAGCTGCAGAAGCGCAGCACGGCTGCCG
TCGGAGTTGTCGGCTACTCGTTTTCCTCCATCAACACGACCGTCGGCAGC
GTTGCCAGGGGCGGCGATAAAGACAGGGAACACGAGAAGGACGAAGAGAG
GCGGGGTCCGTGCTGGGTAGGGTTGGATAACGACCTGTCCATGGAGCTCC
CGGAGGAAGATCCAGTCGACTTGAGCTTGGTTTTTGAGACCTGTCCATGG
AGCTCCCGGAGGAAGATCCAGTCGACTTGAGCTTGGTTTTTGAGGTGTGG
CACAGCGGCACGATCACCAACGGCATCGTCGGGTCCACGCGCCGCGTGCC
GGTGGTCGAGATCAAACCGCCGTCCCCCGCAGGAGCAGCAGCAGCAGCGA
CAGCAGCAGCAGCAGCAGCAGCAGGCGAAGGCGAAGGGCAGGGCGATAAT
GACAGCATTTCTGCCTCCGCCGTATCCGCCGCCTCCGCCCCTAGCAGCGC
GTCGAAGGAAGAGTCGGACTCGGTCTGGTTGGAGTTGGACTCCGGGGGGA
TGCTGATGGTGTGGCACAGCGGCACGATCACCAACGGCATCGTCGGGTCC
ACGCGCCGCGTGCCGGTGGTCGAGATCAAACCGCCGTCCCCCGCAGGAGC
AGCAGCAGCAGCGACAGCAGCAGCAGCAGCAGCAGCAGGCGAAGGCGAAG
GGCAGGGCGATAATGACAGCATTTCTGCCTCCGCCGTATCCGCCGCCTCC
GCCCCTAGCAGCGCGTCGAAGGAAGAGTCGGACTCGGTCTGGTTGGAGTT
GGACTCCGGGGGGATGCTGATGGTGAAGCTTGCCGCGTCCGAGCTGACGG
CTCACCGGCGGCGCAACAGCGTAAATCAGCCGACAGACTTCGATGCCGCG
AAGACAGTGAGCGACGCTGCTACCTCCTCGTCAGCAGAGCTGACCGACAG
CCAGAGGACAATTCGCCGCTGGTGTTAGGTGAAGCTTGCCGCGTCCGAGC
TGACGGCTCACCGGCGGCGCAACAGCGTAAATCAGCCGACAGACTTCGAT
GCCGCGAAGACAGTGAGCGACGCTGCTACCTCCTCGTCAGCAGAGCTGAC
CGACAGCCAGAGGACAATTCGCCGCTGGTGTTAG
back to top