mRNA_H-canaliculatus_F_contig11380.1227.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11380.1227.1
Unique NamemRNA_H-canaliculatus_F_contig11380.1227.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig11380.1227.1 vs. uniprot
Match: D8LDU2_ECTSI (DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU2_ECTSI)

HSP 1 Score: 409 bits (1052), Expect = 3.110e-132
Identity = 228/317 (71.92%), Postives = 251/317 (79.18%), Query Frame = 1
Query:    1 QALYEAGYITYMRTDRPSLSNEAAGVAELAVRDSFGDEFVRKGDAKAVKVKGSQEAHEAIRPALITGGAPVGAGAAVSATKTSATTET-----------------LSAGAFLHPSDLPQPEEGG----LEEQQRALYDLVYRRTLASAMAESEADFTTVSLGADGISAGGDAGDEEVDVVFRASGKTTVFEGFLKAY-SEGPDDALPATEGVTWDAQETELPVMVEGGTVVCEQAKPVPHRTSPPRRYTEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNMQGRTLTPSLTGFVVADLLREHFPDFTDTGFTAKV 885
            QALYEAGYITYMRTDRPSLS EAAGVAE AVRDSFGDE+VRKGDAK VKVKGSQEAHEAIRPAL+        GA  +AT T+   +                   + G FLHP++LP  E+GG    LEEQ RALYDLVYRRTLASAMAESEADFTTVSLGA G+S G   G+E VDVV +ASGKTTVFEGFLKAY  EG D+++P       D QETELP++VEGG VVCE A+P PHRTSPPRR++EASFIKELEAKGVGRPSTYASIIGTLRTRTYVN+QGR+LTPSLTGFVVADLLREHFPDFTDTGFTAK+
Sbjct:  415 QALYEAGYITYMRTDRPSLSKEAAGVAEGAVRDSFGDEYVRKGDAKTVKVKGSQEAHEAIRPALV--------GATPAATDTADGKQAREEEXXXXXXXXXXXXXTTGGRFLHPTELPVEEDGGGGRGLEEQHRALYDLVYRRTLASAMAESEADFTTVSLGAGGVSLGD--GEEVVDVVLKASGKTTVFEGFLKAYREEGADESVPGGAAAEGDDQETELPLLVEGGKVVCEDARPAPHRTSPPRRFSEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNLQGRSLTPSLTGFVVADLLREHFPDFTDTGFTAKM 721          
BLAST of mRNA_H-canaliculatus_F_contig11380.1227.1 vs. uniprot
Match: A0A6H5KCV2_9PHAE (TOP1Ac domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV2_9PHAE)

HSP 1 Score: 388 bits (996), Expect = 9.470e-127
Identity = 223/320 (69.69%), Postives = 242/320 (75.62%), Query Frame = 1
Query:    1 QALYEAGYITYMRTDRPSLSNEAAGVAELAVRDSFGDEFVRKGDAKAVKVKGSQEAHEAIRPALITGGAPVGAGAAVSATKTSATTET------------------LSAGAFLHPSDLPQPEEG------GLEEQQRALYDLVYRRTLASAMAESEADFTTVSLGADGISAGGDAGDEEVDVVFRASGKTTVFEGFLKAYS-EGPDDALPATEGVTWDAQETELPVMVEGGTVVCEQAKPVPHRTSPPRRYTEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNMQGRTLTPSLTGFVVADLLREHFPDFTDTGFTAKV 885
            QALYEAGYITYMRTDRPSLS EAA VAE AVRDSFG E+VRKGDAK VKVKGSQEAHEAIRPAL+        GA  +AT T    +                      G FLHP++LP  E        GLEEQ RALYDLVYRRTLASAMAESEADFTTVSLGA G+S G   G+E VDVV +ASGKTTVF+GFLKAY  EG D+++P       D QETELP++VEGG VVCE A+P PHRTSPPRRY   SFIKELEAKGVGRPSTYASIIGTLRTRTYVN+QGR+LTPSLTGFVVADLLREHFPDFTDTGFTAK+
Sbjct:  116 QALYEAGYITYMRTDRPSLSKEAARVAEGAVRDSFGGEYVRKGDAKVVKVKGSQEAHEAIRPALV--------GATPAATDTHDGKQAGEEXXXXXXXXXXXXXXXXXGGRFLHPTELPVEEXXXXXXXRGLEEQHRALYDLVYRRTLASAMAESEADFTTVSLGAGGVSLGD--GEEVVDVVLKASGKTTVFDGFLKAYRVEGADESVPGGAAAEGDDQETELPLLVEGGEVVCEDARPAPHRTSPPRRYR--SFIKELEAKGVGRPSTYASIIGTLRTRTYVNLQGRSLTPSLTGFVVADLLREHFPDFTDTGFTAKM 423          
BLAST of mRNA_H-canaliculatus_F_contig11380.1227.1 vs. uniprot
Match: A0A2T4XF30_9BACT (DNA topoisomerase 1 n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A2T4XF30_9BACT)

HSP 1 Score: 209 bits (533), Expect = 2.380e-58
Identity = 124/299 (41.47%), Postives = 170/299 (56.86%), Query Frame = 1
Query:    1 QALYEAGYITYMRTDRPSLSNEAAGVAELAVRDSFGDEF----VRKGDAKAVKVKGSQEAHEAIRPALITGGAPVGAGAAVSATKTSATTETLSAGAFLHPSDLPQPEEGGLEEQQRALYDLVYRRTLASAMAESEADFTTVSLGADGISAGGDAGDEEVDVVFRASGKTTVFEGFLKAYSEGPDDALPATEGVTWDAQETELPVMVEGGTVVCEQAKPVPHRTSPPRRYTEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNMQGRTLTPSLTGFVVADLLREHFPDFTDTGFTAKV 885
            Q LYE G ITYMRTD  +LSN+A   A  AV   +G E+    VR   +KA   KG+QEAHEAIRPA                             AFLHP      E+ G+  +++ LYDL+++RT+A+ MA+++ +FT V+           A D+++   F++SGK  +F GF +AY EG DD   A E      QE +LP + EG TV  ++ + + H T PP RYTEA+ +KELE +GVGRPSTYASII T++ R Y    G+TL P+   F V +LL  HFPD  D+ FT+++
Sbjct:  310 QKLYEKGLITYMRTDSTNLSNQAIQAARSAVESQYGSEYLFERVRNYSSKA---KGAQEAHEAIRPA---------------------------GSAFLHP------EKAGVAGREKKLYDLIWKRTIATQMADAQLEFTNVTT---------TATDKDLSADFKSSGKKILFPGFFRAYVEGSDDPEAALEN-----QEIDLPALAEGDTVSLQELETIGHETKPPARYTEATLVKELENRGVGRPSTYASIISTIQDREYATKDGKTLVPTFIAFAVTELLEAHFPDLVDSDFTSEL 558          
BLAST of mRNA_H-canaliculatus_F_contig11380.1227.1 vs. uniprot
Match: A0A0M2PVX9_PROHO (DNA topoisomerase 1 n=1 Tax=Prochlorothrix hollandica PCC 9006 = CALU 1027 TaxID=317619 RepID=A0A0M2PVX9_PROHO)

HSP 1 Score: 206 bits (523), Expect = 1.010e-56
Identity = 122/296 (41.22%), Postives = 159/296 (53.72%), Query Frame = 1
Query:    1 QALYEAGYITYMRTDRPSLSNEAAGVAELAVRDSFGDEFVR-KGDAKAVKVKGSQEAHEAIRPALITGGAPVGAGAAVSATKTSATTETLSAGAFLHPSDLPQPEEGGLEEQQRALYDLVYRRTLASAMAESEADFTTVSLGADGISAGGDAGDEEVDVVFRASGKTTVFEGFLKAYSEGPDDALPATEGVTWDAQETELPVMVEGGTVVCEQAKPVPHRTSPPRRYTEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNMQGRTLTPSLTGFVVADLLREHFPDFTDTGFTAKV 885
            Q+LYE GYITYMRTD   LS++A   A   V   +G E++  K      K K +QEAHEAIRPA                                  S    P+E GL +Q+R LYDL+++RT+AS MA++     TV +  +             +  FRASGK   F GF +AY EG DD   A E      QE  LP +  G T  C++   V H T PP R+TEA+ +K LE++G+GRPSTYASIIGT+  R Y ++QG  LTP+ T F V + L +HFPD  DTGFTA++
Sbjct:  329 QSLYERGYITYMRTDSVHLSDQAITAARTCVEQKYGSEYLSPKPRQYTTKSKNAQEAHEAIRPA---------------------------------GSQFRTPQETGLVDQERKLYDLIWKRTVASQMADARQTLLTVQVTVE-------------EATFRASGKRIDFPGFFRAYVEGSDDPDAALEN-----QEVLLPPLALGDTPACQELNAVGHETQPPARFTEATLVKALESEGIGRPSTYASIIGTILDRDYAHLQGNALTPTFTAFAVTEFLEKHFPDLVDTGFTARM 573          
BLAST of mRNA_H-canaliculatus_F_contig11380.1227.1 vs. uniprot
Match: K9SQT0_9SYNE (DNA topoisomerase 1 n=1 Tax=Synechococcus sp. PCC 7502 TaxID=1173263 RepID=K9SQT0_9SYNE)

HSP 1 Score: 202 bits (515), Expect = 6.030e-56
Identity = 121/296 (40.88%), Postives = 161/296 (54.39%), Query Frame = 1
Query:    1 QALYEAGYITYMRTDRPSLSNEAAGVAELAVRDSFGDEFVR-KGDAKAVKVKGSQEAHEAIRPALITGGAPVGAGAAVSATKTSATTETLSAGAFLHPSDLPQPEEGGLEEQQRALYDLVYRRTLASAMAESEADFTTVSLGADGISAGGDAGDEEVDVVFRASGKTTVFEGFLKAYSEGPDDALPATEGVTWDAQETELPVMVEGGTVVCEQAKPVPHRTSPPRRYTEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNMQGRTLTPSLTGFVVADLLREHFPDFTDTGFTAKV 885
            QALYE G+ITYMRTD   LS++A   A   V   +G+ ++  K    A K KG+QEAHEAIRPA                                  +    P++ GL  ++ +LYDL+++RT+AS MA++     +V +G +             D +FR+SGK   F GF +AY EG DD   A EG     QE  LP ++ G   VC+Q +PV H T PP RYTEAS +K LE++G+GRPSTYASIIGT+  R Y  +   TL P+ T F V  LL EHFP+  D  FT+K+
Sbjct:  310 QALYEQGFITYMRTDSVHLSDQAISAARNCVSQMYGENYLSPKPRQYATKSKGAQEAHEAIRPA---------------------------------GASFRTPQQTGLSGREFSLYDLIWKRTIASQMADARQTMISVQIGVE-------------DAIFRSSGKRIDFAGFFRAYVEGSDDPDAAIEG-----QEIVLPKLIIGDHPVCQQLQPVGHETQPPARYTEASLVKTLESEGIGRPSTYASIIGTICDRGYAQLTHNTLIPTFTAFAVTSLLEEHFPNLVDPSFTSKM 554          
BLAST of mRNA_H-canaliculatus_F_contig11380.1227.1 vs. uniprot
Match: UPI001EDA1AE5 (type I DNA topoisomerase n=2 Tax=unclassified Rhodohalobacter TaxID=2621813 RepID=UPI001EDA1AE5)

HSP 1 Score: 202 bits (515), Expect = 8.090e-56
Identity = 120/295 (40.68%), Postives = 161/295 (54.58%), Query Frame = 1
Query:    1 QALYEAGYITYMRTDRPSLSNEAAGVAELAVRDSFGDEFVRKGDAKAVKVKGSQEAHEAIRPALITGGAPVGAGAAVSATKTSATTETLSAGAFLHPSDLPQPEEGGLEEQQRALYDLVYRRTLASAMAESEADFTTVSLGADGISAGGDAGDEEVDVVFRASGKTTVFEGFLKAYSEGPDDALPATEGVTWDAQETELPVMVEGGTVVCEQAKPVPHRTSPPRRYTEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNMQGRTLTPSLTGFVVADLLREHFPDFTDTGFTAKV 885
            Q LYE GYITYMRTD  +LS +A   A   V   +G+E++ K      K KG+QEAHEAIRPA                             +F HP      E+ GL  +Q  LYDL+++RT+A+ MAE+  +FT V++ A+          +     F++SGK  +F GF +AY EG DD   A E      QE  LP M EG      + + + H T PP RYTEA+ +KELE  GVGRPSTYA+IIGT++ R Y   +G+ L P+ T F V +LL EHFP   D+ FT+++
Sbjct:  312 QKLYENGYITYMRTDSTNLSGQAISAARNEVEKQYGEEYLFKRVRTYGKAKGAQEAHEAIRPA---------------------------GSSFTHP------EKAGLSGRQFKLYDLIWKRTIATQMAEARLEFTNVTISAE---------HDGTKADFKSSGKKILFPGFFRAYVEGSDDPEAAIEN-----QEIYLPEMKEGDATELHELESISHETKPPARYTEATLVKELEKSGVGRPSTYATIIGTIQERGYAKSEGKALVPTYTAFAVTELLEEHFPHVVDSKFTSQL 559          
BLAST of mRNA_H-canaliculatus_F_contig11380.1227.1 vs. uniprot
Match: UPI001EFFCE5D (type I DNA topoisomerase n=2 Tax=Synechococcus TaxID=1129 RepID=UPI001EFFCE5D)

HSP 1 Score: 202 bits (514), Expect = 1.940e-55
Identity = 123/296 (41.55%), Postives = 160/296 (54.05%), Query Frame = 1
Query:    1 QALYEAGYITYMRTDRPSLSNEAAGVAELAVRDSFGDEFVR-KGDAKAVKVKGSQEAHEAIRPALITGGAPVGAGAAVSATKTSATTETLSAGAFLHPSDLPQPEEGGLEEQQRALYDLVYRRTLASAMAESEADFTTVSLGADGISAGGDAGDEEVDVVFRASGKTTVFEGFLKAYSEGPDDALPATEGVTWDAQETELPVMVEGGTVVCEQAKPVPHRTSPPRRYTEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNMQGRTLTPSLTGFVVADLLREHFPDFTDTGFTAKV 885
            Q LYE GYITYMRTD   LS++A   A   V   +G E++  K      K KG+QEAHEAIRPA                                  S+   P +  L  Q+ ALYDL+++RT+AS MAE+    TTV +G +             D VFRASGK   F GF +AY EG DD   A E      +E  LP++ +G    C++ +PV H T PP R+TEAS +K LE++G+GRPSTYA+I+ T+ +R YV   G  L P+ T F V DLL +HFPD  +T FTAK+
Sbjct:  310 QKLYEEGYITYMRTDSVHLSDQAISAARACVSSMYGKEYLSPKPRQYTTKAKGAQEAHEAIRPA---------------------------------GSEFRLPNQTPLSGQELALYDLIWKRTVASQMAEARQTHTTVLIGVE-------------DAVFRASGKRIDFPGFFRAYVEGSDDPDAALED-----REVHLPLLRQGDHPECQKLEPVGHETQPPARFTEASLVKVLESEGIGRPSTYATILNTIVSRGYVKPMGNALVPTYTAFAVTDLLEKHFPDLVNTRFTAKM 554          
BLAST of mRNA_H-canaliculatus_F_contig11380.1227.1 vs. uniprot
Match: A0A2T2RSE2_9CYAN (DNA topoisomerase 1 n=1 Tax=Cyanobacteria bacterium QH_9_48_43 TaxID=1919126 RepID=A0A2T2RSE2_9CYAN)

HSP 1 Score: 201 bits (512), Expect = 2.910e-55
Identity = 126/296 (42.57%), Postives = 161/296 (54.39%), Query Frame = 1
Query:    1 QALYEAGYITYMRTDRPSLSNEAAGVAELAVRDSFGDEFVR-KGDAKAVKVKGSQEAHEAIRPALITGGAPVGAGAAVSATKTSATTETLSAGAFLHPSDLPQPEEGGLEEQQRALYDLVYRRTLASAMAESEADFTTVSLGADGISAGGDAGDEEVDVVFRASGKTTVFEGFLKAYSEGPDDALPATEGVTWDAQETELPVMVEGGTVVCEQAKPVPHRTSPPRRYTEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNMQGRTLTPSLTGFVVADLLREHFPDFTDTGFTAKV 885
            Q+LYE GYITYMRTD   LS +A   +   V+  +G E++  K    + K KG+QEAHEAIRPA                                  +    P+E GL+ ++R+LYDL+++RT+AS MAE+     +V++  +      DAG       FRASGK   F GF +AY EG DD   A E      QE  LP +    T  C Q + V H T PP RYTEAS +K LE++G+GRPSTYASIIGT+  R Y  M+G  L P+ T F V  LL EHFPD  DTGFTA +
Sbjct:  310 QSLYEQGYITYMRTDSVHLSEQAIAASRECVQQKYGKEYLSPKPRQYSTKSKGAQEAHEAIRPA---------------------------------GASFRTPQETGLQGRERSLYDLIWKRTVASQMAEARLTQISVNVKVE------DAG-------FRASGKRIDFAGFFRAYVEGSDDPEAALEN-----QEVILPSLQAEDTPHCTQLEAVAHETQPPARYTEASLVKTLESEGIGRPSTYASIIGTIVDRGYAQMRGSALVPTFTAFAVTSLLEEHFPDLVDTGFTANM 554          
BLAST of mRNA_H-canaliculatus_F_contig11380.1227.1 vs. uniprot
Match: A0A8J7G7X4_9CYAN (DNA topoisomerase 1 n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A8J7G7X4_9CYAN)

HSP 1 Score: 200 bits (509), Expect = 8.120e-55
Identity = 124/296 (41.89%), Postives = 159/296 (53.72%), Query Frame = 1
Query:    1 QALYEAGYITYMRTDRPSLSNEAAGVAELAVRDSFGDEFVRKGDAK-AVKVKGSQEAHEAIRPALITGGAPVGAGAAVSATKTSATTETLSAGAFLHPSDLPQPEEGGLEEQQRALYDLVYRRTLASAMAESEADFTTVSLGADGISAGGDAGDEEVDVVFRASGKTTVFEGFLKAYSEGPDDALPATEGVTWDAQETELPVMVEGGTVVCEQAKPVPHRTSPPRRYTEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNMQGRTLTPSLTGFVVADLLREHFPDFTDTGFTAKV 885
            Q+LYE GYITYMRTD  +LS +A   A   V   +G E++     + A K KG+QEAHEAIRPA                                  S    P+E GL++++  LYDL+++RT+A+ MAE      TV +          AG+ E    FRA+GK   F GF +AY EG DD   A E      QE  LP +  G    CE+ +P+ H T PP RYTEAS +K LE +G+GRPSTYASIIGT+  R Y  M   +L P+ T F V  LL +HFPD  DTGFTA++
Sbjct:  310 QSLYEQGYITYMRTDSTNLSQQAIAAARSCVEQMYGREYLSPEPRQYATKAKGAQEAHEAIRPA---------------------------------GSTFRTPQETGLKDRELRLYDLIWKRTVATQMAEVRQTHITVQI---------QAGEAE----FRATGKRIDFAGFFRAYVEGSDDPDAAIED-----QEVILPPLRVGDHPSCEELEPIGHETQPPARYTEASLVKTLENEGIGRPSTYASIIGTIIDRGYAQMINNSLVPTFTAFAVTSLLEKHFPDLVDTGFTARM 554          
BLAST of mRNA_H-canaliculatus_F_contig11380.1227.1 vs. uniprot
Match: A0A521DC44_9BACT (DNA topoisomerase 1 n=1 Tax=Gracilimonas mengyeensis TaxID=1302730 RepID=A0A521DC44_9BACT)

HSP 1 Score: 199 bits (507), Expect = 1.050e-54
Identity = 122/299 (40.80%), Postives = 164/299 (54.85%), Query Frame = 1
Query:    1 QALYEAGYITYMRTDRPSLSNEAAGVAELAVRDSFGDEF----VRKGDAKAVKVKGSQEAHEAIRPALITGGAPVGAGAAVSATKTSATTETLSAGAFLHPSDLPQPEEGGLEEQQRALYDLVYRRTLASAMAESEADFTTVSLGADGISAGGDAGDEEVDVVFRASGKTTVFEGFLKAYSEGPDDALPATEGVTWDAQETELPVMVEGGTVVCEQAKPVPHRTSPPRRYTEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNMQGRTLTPSLTGFVVADLLREHFPDFTDTGFTAKV 885
            Q LYE G+ITYMRTD   LS +A G A  AV + +G+++    VR  + K    KG+QEAHEAIRPA                                  S   +PE+ GL  ++  LYDL+++RT+A+ MAE+E +FT V++ A          +   D  FRA GK  +F G+ +AY EG DD   A E      QE  LP M EG +   +    V H T PP R+TEA+ +KELE +GVGRPSTYASII T++ R Y   +G+TL P+ T F V+ LL +HFPD  D+ FT+ +
Sbjct:  312 QKLYEKGFITYMRTDSTRLSGQAIGAARDAVTEEYGEDYLFERVRNYNKKG---KGAQEAHEAIRPA---------------------------------GSRFVKPEKAGLSGREFKLYDLIWKRTIATQMAEAELEFTNVTIRAT---------NNGTDADFRAGGKKILFPGYFRAYVEGSDDPEAALEN-----QENFLPAMNEGDSTELDDLNFVSHETKPPARFTEATLVKELEKRGVGRPSTYASIISTIQDRGYAKSEGKTLIPTFTAFAVSTLLEKHFPDLVDSDFTSSL 560          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11380.1227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDU2_ECTSI3.110e-13271.92DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus si... [more]
A0A6H5KCV2_9PHAE9.470e-12769.69TOP1Ac domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A2T4XF30_9BACT2.380e-5841.47DNA topoisomerase 1 n=1 Tax=Bacteroidetes bacteriu... [more]
A0A0M2PVX9_PROHO1.010e-5641.22DNA topoisomerase 1 n=1 Tax=Prochlorothrix holland... [more]
K9SQT0_9SYNE6.030e-5640.88DNA topoisomerase 1 n=1 Tax=Synechococcus sp. PCC ... [more]
UPI001EDA1AE58.090e-5640.68type I DNA topoisomerase n=2 Tax=unclassified Rhod... [more]
UPI001EFFCE5D1.940e-5541.55type I DNA topoisomerase n=2 Tax=Synechococcus Tax... [more]
A0A2T2RSE2_9CYAN2.910e-5542.57DNA topoisomerase 1 n=1 Tax=Cyanobacteria bacteriu... [more]
A0A8J7G7X4_9CYAN8.120e-5541.89DNA topoisomerase 1 n=2 Tax=Pseudanabaenales TaxID... [more]
A0A521DC44_9BACT1.050e-5440.80DNA topoisomerase 1 n=1 Tax=Gracilimonas mengyeens... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11380contigH-canaliculatus_F_contig11380:331..3603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score413.7
Seed ortholog evalue7.3e-113
Seed eggNOG ortholog2880.D8LDU2
KEGG koko:K03168
EggNOG free text desc.DNA topoisomerase type I activity
EggNOG OGsCOG0550@1,KOG1956@2759
EC5.99.1.2
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons5
Model size885
Cds size885
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11380.1227.1prot_H-canaliculatus_F_contig11380.1227.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11380 331..3603 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928822.0131059-CDS-H-canaliculatus_F_contig11380:330..5411622928822.0131059-CDS-H-canaliculatus_F_contig11380:330..541Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11380 331..541 -
1696845577.863662-CDS-H-canaliculatus_F_contig11380:330..5411696845577.863662-CDS-H-canaliculatus_F_contig11380:330..541Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11380 331..541 -
1622928822.030187-CDS-H-canaliculatus_F_contig11380:876..9761622928822.030187-CDS-H-canaliculatus_F_contig11380:876..976Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11380 877..976 -
1696845577.8738801-CDS-H-canaliculatus_F_contig11380:876..9761696845577.8738801-CDS-H-canaliculatus_F_contig11380:876..976Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11380 877..976 -
1622928822.0512967-CDS-H-canaliculatus_F_contig11380:1671..17831622928822.0512967-CDS-H-canaliculatus_F_contig11380:1671..1783Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11380 1672..1783 -
1696845577.8844862-CDS-H-canaliculatus_F_contig11380:1671..17831696845577.8844862-CDS-H-canaliculatus_F_contig11380:1671..1783Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11380 1672..1783 -
1622928822.0658727-CDS-H-canaliculatus_F_contig11380:2876..32111622928822.0658727-CDS-H-canaliculatus_F_contig11380:2876..3211Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11380 2877..3211 -
1696845577.8929534-CDS-H-canaliculatus_F_contig11380:2876..32111696845577.8929534-CDS-H-canaliculatus_F_contig11380:2876..3211Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11380 2877..3211 -
1622928822.0783193-CDS-H-canaliculatus_F_contig11380:3476..36031622928822.0783193-CDS-H-canaliculatus_F_contig11380:3476..3603Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11380 3477..3603 -
1696845577.901353-CDS-H-canaliculatus_F_contig11380:3476..36031696845577.901353-CDS-H-canaliculatus_F_contig11380:3476..3603Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11380 3477..3603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11380.1227.1

>prot_H-canaliculatus_F_contig11380.1227.1 ID=prot_H-canaliculatus_F_contig11380.1227.1|Name=mRNA_H-canaliculatus_F_contig11380.1227.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=295bp
QALYEAGYITYMRTDRPSLSNEAAGVAELAVRDSFGDEFVRKGDAKAVKV
KGSQEAHEAIRPALITGGAPVGAGAAVSATKTSATTETLSAGAFLHPSDL
PQPEEGGLEEQQRALYDLVYRRTLASAMAESEADFTTVSLGADGISAGGD
AGDEEVDVVFRASGKTTVFEGFLKAYSEGPDDALPATEGVTWDAQETELP
VMVEGGTVVCEQAKPVPHRTSPPRRYTEASFIKELEAKGVGRPSTYASII
GTLRTRTYVNMQGRTLTPSLTGFVVADLLREHFPDFTDTGFTAKV
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mRNA from alignment at H-canaliculatus_F_contig11380:331..3603-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11380.1227.1 ID=mRNA_H-canaliculatus_F_contig11380.1227.1|Name=mRNA_H-canaliculatus_F_contig11380.1227.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3273bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11380:331..3603- (Hapterophycus canaliculatus Oshoro5f female)
CAGGCGCTGTACGAGGCGGGGTACATCACATACATGCGCACGGACAGGCC CAGCCTCAGCAACGAGGCTGCCGGAGTGGCGGAACTGGCGGTCCGGGACT CCTTCGGCGACGAGTTCGTGCGAAAGGGTAAGAACGCTTCGGCACCGCCC CATACACACCGCGTGCTCCGAAATGGGCGGCAAGGCCGTATGGCATCAAG TTGGAACGACGAATCCCGCCGTTGTGGCTATTTCGGACGCCTCGACGAAA AAAACATGTGGGGGATTCGTCTCAAACTTGACCTGTTTTTTTTAGTAAAG CCTTGGTCGAGAACAATAACGCATCAAGCAGCACTCCCCCAGGTCCGTTG CTTTCTTATTTTCATACTTTTCGCGTGTGGATGTTCCTCCAGGGGACGCC AAGGCCGTCAAGGTGAAGGGCAGCCAGGAGGCCCACGAGGCGATTCGCCC GGCGCTCATCACCGGCGGGGCCCCCGTCGGCGCCGGTGCGGCGGTCTCGG CGACGAAGACCTCGGCGACAACCGAGACGCTGTCGGCGGGGGCTTTCCTC CACCCGTCGGACCTGCCCCAGCCGGAAGAAGGGGGTCTGGAGGAGCAGCA GAGGGCGCTGTACGACCTGGTATACCGTAGGACGCTCGCCAGCGCTATGG CCGAGTCGGAGGCGGACTTCACCACCGTTTCGCTCGGGGCCGACGGCATT TCGGCGGGGGGCGACGCCGGGGACGAGGTGCGCCTACCTGTGTTGACGGG CGTCTGCTCGCCCGGCTCCTGCACGAGCGCTTGCTTGTGCTTGTGCCTCC GTATCTCTGTTTCCGTGTCTCCGGGTGCCTAGTTTCTGGCTCCCGGGGTG GCGTCGGCCGCGCCTTTGAAAGCGATGCGTATCGGCTGGCCGGCTGGTGC CGGACGAAAGGCGTCGCTGCTGGGTTATGGCTGTGCGAGATTGGTTCAGC CCGTGGGCTGTGTCTTCGTTCTCTCGGTGCTAGCTGCGTGCCTCGGCCGT GCGTTCAACTGTTCGTGCTTTGCCCGTGTGTGTCGGGGGCGTCGGTTGAA GGCAAAGCCGCACAGCCGCCGTTTTGAGGTCCTTGGCAGGTTGGCCGGCG AGAAGGTTATTAGGGAGGAAGGCAACGCCAGCTCTCCAGTCGGAACGAGC AGCGGGTGGACTATCCTGGCCTGTTTGGCGCTTGAAACTGCAAAAAACGT TTTCAGCCGGTTTGATGAAGGTGGCATCAGTAGTCGCACAACGACGCGGC CTCGCCTCCGAGGGCATCGCTGACGACGAAAACAAGATCAACGACCTGAA TCGGGGTGTGGCTCACCTCTCGGAGACTAATGTCTTGTACCACAGCCTCA ATTCGAAACGAGGGCGACAAATTGGGGGTGCCCTCTCCCCATCACCACCA CACACCACACACCCAAACACCACACCACCCAACTAAACTCATATCTCACT CCNNNNNNNNNNCGAAGGGGGGGGGGGGCCCCCCCCTCGGGAATAAATTT TTTTTCCCCCCCCCCCAATCGCAAACGGGGGGAACAAAGGGGGGGGGCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCGCTCTCTCTCTCGTTCATG TGTATCTGTCCCCCTGTATTTCGCTGCCTCTCTCTCTCCGTACAGCAGTG CCGTTTTAACCAGGCCCCGAGCGTGCCGATTCTGGCGAGTCTCAAGCGGA CATTCGCGCCCGTTCCCGCGTGGGACATTTCGCTCGCGGCCTCGTGGCAT CCTATCCCACTTTTTCTTTGCCCGCTCTTTCCTATGCCGGGGCCTTTGTG TGAACGACCTGACGGAACAGGAGGTCGATGTGGTGTTCAGGGCCTCGGGA AAGACGACGGTTTTCGAGGGGTTCTTGAAGGCCTACAGCGAGGGGCCAGA CGACGCCCTCCCCGCCACCGAAGGTGTGACGTGTAGGCGGACGTAGGTGT CTGATTTTCGCGCGAGTTGGCACTCGGCGGGAGGGGAGGAGAGATGATTG GTGCCGCCGCCGAAGTAGTAAGGTCGTGCGTCACGCTTGGGATAAAGGCG CTGCGGCAAATCAGCCGGTAAGCCGAGCTTCGTGGTTACAAGAGCATTTC TGCAGTCTCGCGCTGTCCTGTCAAGGGCTCTTTCTCCGCCGACTCTCTTC GCCTACCTGGTGTGTTAATCCTTCTTGTGTCTCCTATCCACTTGACCGCC GCCGCCGCCGCTGCTGCCGTTGCTACGGCAATTCATTGCTTCTCCTACCT CTCCATTCGTTTTGCCTTCCCTCGTCGTTCCCCACAATATCGCTGCTACT CGTCTTATCGAAAGTCTTGCGTGGGCGACGAACCATCCCACCCCATAGGT TGTCGCCCCTGTCTACCCCATCGCATCGTTCTGCACCAAGACGCGGCGGT AGCTTTCTCCGGGCAACCGCAGTGAACCCCGCGTGTAGATTTGAATCGAT TCGAGTGTGTAGTTTCGTCTTTTGTTTTTCACAAGCGTTTGTTGGTGGCG ACCTTGAGGTGTCGCATCCCTCGAACGTGCTTCGCGTCGAGCACCCCCTT CGCGGAGTTGGTTTTTGTGTGGACCTGAATGCGTCAGAATGATTCCATCC CTCGCCAATGCCCGCGCAAAAAAACAGGGGACGCGCAAGAGACGGAGTTA CCAGTTATGGTGGAGGGAGGCACGGTTGTGTGCGAGCAGGCGAAGCCCGT GCCTCATCGCACGTCTCCCCCAAGAAGGTACAGGACGAGAGTCACCGTGG CGGCGTCGACAGGGCCAGGGGTGCCACCCGCATTTCGTTTCTAGAGGGGG GGGGTCGAGAAGTCAAGGGGAGTGTGGTGAAAGAGGGTAGGGAGGGCAAA ATATCTTGCGAAGAAACACCGTACCGTGCCGTCGGCTTGGGAAATACAGT GCGAGATCGAGGCACACGGCTGCTTGTTGTCTGTACCGCTGACCGGGGCG CCTTCTAAACACTAGGCGGCATTTGGTTCCTCTTCGCCGTCCGAAGAAAG CGAGAGCAGCAGCAAGCATCACAAGCCATCCCTTCCTCCAACACGCCGCA CACACCATGCAGATACACGGAAGCCAGCTTCATCAAGGAGCTCGAGGCCA AGGGAGTGGGCCGACCCTCCACCTACGCCAGCATCATCGGCACTCTGCGC ACGAGGACGTACGTGAACATGCAGGGCCGGACCCTGACCCCCAGCCTGAC GGGGTTCGTCGTGGCCGATCTCCTCCGTGAGCACTTCCCGGACTTCACCG ACACCGGCTTTACGGCAAAGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11380:331..3603-

>mRNA_H-canaliculatus_F_contig11380.1227.1 ID=mRNA_H-canaliculatus_F_contig11380.1227.1|Name=mRNA_H-canaliculatus_F_contig11380.1227.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1770bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11380:331..3603- (Hapterophycus canaliculatus Oshoro5f female)
CAGGCGCTGTACGAGGCGGGGTACATCACATACATGCGCACGGACAGGCC
CAGCCTCAGCAACGAGGCTGCCGGAGTGGCGGAACTGGCGGTCCGGGACT
CCTTCGGCGACGAGTTCGTGCGAAAGGCAGGCGCTGTACGAGGCGGGGTA
CATCACATACATGCGCACGGACAGGCCCAGCCTCAGCAACGAGGCTGCCG
GAGTGGCGGAACTGGCGGTCCGGGACTCCTTCGGCGACGAGTTCGTGCGA
AAGGGGGACGCCAAGGCCGTCAAGGTGAAGGGCAGCCAGGAGGCCCACGA
GGCGATTCGCCCGGCGCTCATCACCGGCGGGGCCCCCGTCGGCGCCGGTG
CGGCGGTCTCGGCGACGAAGACCTCGGCGACAACCGAGACGCTGTCGGCG
GGGGCTTTCCTCCACCCGTCGGACCTGCCCCAGCCGGAAGAAGGGGGTCT
GGAGGAGCAGCAGAGGGCGCTGTACGACCTGGTATACCGTAGGACGCTCG
CCAGCGCTATGGCCGAGTCGGAGGCGGACTTCACCACCGTTTCGCTCGGG
GCCGACGGCATTTCGGCGGGGGGCGACGCCGGGGACGAGGGGACGCCAAG
GCCGTCAAGGTGAAGGGCAGCCAGGAGGCCCACGAGGCGATTCGCCCGGC
GCTCATCACCGGCGGGGCCCCCGTCGGCGCCGGTGCGGCGGTCTCGGCGA
CGAAGACCTCGGCGACAACCGAGACGCTGTCGGCGGGGGCTTTCCTCCAC
CCGTCGGACCTGCCCCAGCCGGAAGAAGGGGGTCTGGAGGAGCAGCAGAG
GGCGCTGTACGACCTGGTATACCGTAGGACGCTCGCCAGCGCTATGGCCG
AGTCGGAGGCGGACTTCACCACCGTTTCGCTCGGGGCCGACGGCATTTCG
GCGGGGGGCGACGCCGGGGACGAGGAGGTCGATGTGGTGTTCAGGGCCTC
GGGAAAGACGACGGTTTTCGAGGGGTTCTTGAAGGCCTACAGCGAGGGGC
CAGACGACGCCCTCCCCGCCACCGAAGGTGTGACGTGAGGTCGATGTGGT
GTTCAGGGCCTCGGGAAAGACGACGGTTTTCGAGGGGTTCTTGAAGGCCT
ACAGCGAGGGGCCAGACGACGCCCTCCCCGCCACCGAAGGTGTGACGTGG
GACGCGCAAGAGACGGAGTTACCAGTTATGGTGGAGGGAGGCACGGTTGT
GTGCGAGCAGGCGAAGCCCGTGCCTCATCGCACGTCTCCCCCAAGAAGGG
GACGCGCAAGAGACGGAGTTACCAGTTATGGTGGAGGGAGGCACGGTTGT
GTGCGAGCAGGCGAAGCCCGTGCCTCATCGCACGTCTCCCCCAAGAAGAT
ACACGGAAGCCAGCTTCATCAAGGAGCTCGAGGCCAAGGGAGTGGGCCGA
CCCTCCACCTACGCCAGCATCATCGGCACTCTGCGCACGAGGACGTACGT
GAACATGCAGGGCCGGACCCTGACCCCCAGCCTGACGGGGTTCGTCGTGG
CCGATCTCCTCCGTGAGCACTTCCCGGACTTCACCGACACCGGCTTTACG
GCAAAGGTGATACACGGAAGCCAGCTTCATCAAGGAGCTCGAGGCCAAGG
GAGTGGGCCGACCCTCCACCTACGCCAGCATCATCGGCACTCTGCGCACG
AGGACGTACGTGAACATGCAGGGCCGGACCCTGACCCCCAGCCTGACGGG
GTTCGTCGTGGCCGATCTCCTCCGTGAGCACTTCCCGGACTTCACCGACA
CCGGCTTTACGGCAAAGGTG
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