mRNA_H-canaliculatus_F_contig10.13.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10.13.1
Unique NamemRNA_H-canaliculatus_F_contig10.13.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10.13.1 vs. uniprot
Match: D7FQZ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQZ0_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 2.260e-6
Identity = 28/40 (70.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:  202 RAEDFSGANLAALLREAGLDVLQDLEICKLVVGSGAYTDK 321
            +AE FSGA+LAALLREAGLDVL+ L+  +L+VG GAYT+K
Sbjct:  861 KAEGFSGADLAALLREAGLDVLRQLKSRELIVGKGAYTEK 900
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQZ0_ECTSI2.260e-670.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10contigH-canaliculatus_F_contig10:16254..17076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size629
Cds size354
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10.13.1prot_H-canaliculatus_F_contig10.13.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10 16254..16803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928625.2289445-CDS-H-canaliculatus_F_contig10:16253..164571622928625.2289445-CDS-H-canaliculatus_F_contig10:16253..16457Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10 16254..16457 +
1696845498.7110336-CDS-H-canaliculatus_F_contig10:16253..164571696845498.7110336-CDS-H-canaliculatus_F_contig10:16253..16457Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10 16254..16457 +
1622928625.2456243-CDS-H-canaliculatus_F_contig10:16653..168031622928625.2456243-CDS-H-canaliculatus_F_contig10:16653..16803Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10 16654..16803 +
1696845498.7275534-CDS-H-canaliculatus_F_contig10:16653..168031696845498.7275534-CDS-H-canaliculatus_F_contig10:16653..16803Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10 16654..16803 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928625.2604475-UTR-H-canaliculatus_F_contig10:16803..170761622928625.2604475-UTR-H-canaliculatus_F_contig10:16803..17076Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10 16804..17076 +
1696845498.7448382-UTR-H-canaliculatus_F_contig10:16803..170761696845498.7448382-UTR-H-canaliculatus_F_contig10:16803..17076Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10 16804..17076 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10.13.1

>prot_H-canaliculatus_F_contig10.13.1 ID=prot_H-canaliculatus_F_contig10.13.1|Name=mRNA_H-canaliculatus_F_contig10.13.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=118bp
GAVRYHFSGIRRRPRSDRQKLGGDYHRLVRRRNTFCVLRPPIKSPQGGAT
LFALQRAPPLPRQQEGSRAEDFSGANLAALLREAGLDVLQDLEICKLVVG
SGAYTDKAEKRVAELPT*
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mRNA from alignment at H-canaliculatus_F_contig10:16254..17076+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10.13.1 ID=mRNA_H-canaliculatus_F_contig10.13.1|Name=mRNA_H-canaliculatus_F_contig10.13.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=823bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10:16254..17076+ (Hapterophycus canaliculatus Oshoro5f female)
GGTGCTGTCCGCTACCATTTCTCTGGGATCAGACGTCGACCTCGAAGTGA
TCGACAGAAGTTGGGAGGTGACTACCATCGTCTCGTTCGACGTCGAAACA
CGTTTTGCGTCCTCCGACCTCCCATCAAAAGCCCCCAAGGTGGCGCAACA
CTTTTTGCGTTGCAACGAGCCCCACCTTTGCCGCGGCAGCAGGAGGGTTC
TCGAGTGAGTCAGTGTTTGTTGAAGACACAAGGCTTACACGCACGCCGAT
TGCGCCTTATGAGGTGGAGTGGACCAAATCAGCCGCAGAATGCGCACGCA
CGCTCTCTATGAAAACTGCTGTCTTTTTCGCTTGACACATGTTTGGACAA
CCAAGCAAAATCCAAGCCTGGCTGACGGGCGGCAATTGGTTTCCATGCAG
GCGGAGGACTTCAGCGGAGCGAACTTGGCGGCTCTGTTGCGGGAGGCCGG
GCTGGACGTTCTGCAGGACCTCGAGATCTGCAAGTTGGTCGTGGGCAGCG
GCGCTTACACAGACAAGGCTGAGAAGCGAGTGGCGGAGTTGCCCACATAG
TTCGTCCTCGTGAAGAAAAAGAGTATATTGCACGAAAACAAAAAAGTGTC
GTAACGCGAAGGTGGCCTACCTTTTTTCTTCTTGGAGCAACCAGAGTTCG
TACATGGAGAAAATTGTTGAGAAGGACCTGAGACAGTCTTCTATCAGGGA
TATCGCATACCTGCGACGTCGCTCGCTCCCCCCTGTCTCCTCCCAGTCAC
TCAAGTAAGGGGTGCTACAGAGGGTAGCTCGCGTGCTGTGCCTCGCACCT
TCGAATCCCCGGACGCCTCACAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10:16254..17076+

>mRNA_H-canaliculatus_F_contig10.13.1 ID=mRNA_H-canaliculatus_F_contig10.13.1|Name=mRNA_H-canaliculatus_F_contig10.13.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=708bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10:16254..17076+ (Hapterophycus canaliculatus Oshoro5f female)
GGTGCTGTCCGCTACCATTTCTCTGGGATCAGACGTCGACCTCGAAGTGA
TCGACAGAAGTTGGGAGGTGACTACCATCGTCTCGTTCGACGTCGAAACA
CGTTTTGCGTCCTCCGACCTCCCATCAAAAGCCCCCAAGGTGGCGCAACA
CTTTTTGCGTTGCAACGAGCCCCACCTTTGCCGCGGCAGCAGGAGGGTTC
TCGAGGTGCTGTCCGCTACCATTTCTCTGGGATCAGACGTCGACCTCGAA
GTGATCGACAGAAGTTGGGAGGTGACTACCATCGTCTCGTTCGACGTCGA
AACACGTTTTGCGTCCTCCGACCTCCCATCAAAAGCCCCCAAGGTGGCGC
AACACTTTTTGCGTTGCAACGAGCCCCACCTTTGCCGCGGCAGCAGGAGG
GTTCTCGAGCGGAGGACTTCAGCGGAGCGAACTTGGCGGCTCTGTTGCGG
GAGGCCGGGCTGGACGTTCTGCAGGACCTCGAGATCTGCAAGTTGGTCGT
GGGCAGCGGCGCTTACACAGACAAGGCTGAGAAGCGAGTGGCGGAGTTGC
CCACATAGGCGGAGGACTTCAGCGGAGCGAACTTGGCGGCTCTGTTGCGG
GAGGCCGGGCTGGACGTTCTGCAGGACCTCGAGATCTGCAAGTTGGTCGT
GGGCAGCGGCGCTTACACAGACAAGGCTGAGAAGCGAGTGGCGGAGTTGC
CCACATAG
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