mRNA_H-canaliculatus_F_contig11285.1155.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11285.1155.1
Unique NamemRNA_H-canaliculatus_F_contig11285.1155.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11285.1155.1 vs. uniprot
Match: D7G8T1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8T1_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 1.360e-56
Identity = 104/201 (51.74%), Postives = 127/201 (63.18%), Query Frame = 1 
Query:    1 MIAKDSKASRSVVEIVEGCQEVRDLCRAAGLEPKNVKNAVKSGFESLVGGVAWRRHHGEERRNEMVR--EGPATQTLRAHGFAIGPYD---KRVAYRRTTPEIRGETMETAMNAIKSAYYPHGMNVAMWDAALDMETAEFEWLVESGTAKTVKGLVHRYAVFWGQGYLKWEGGLPTGVPDVGCAGNVIMGPDTVYFGNALY 588
            MI K +K S   V +VEG QEVRDLCRAAGL  K+VK+A KS     V   A  RH   E + +M+    GP +  LR  GF+I P+    KRV+ R   P+ R E ME  + ++K AYYPH +NVA WD  L ME  E   +VESGTAK   GL +RYAVF GQG +KW+GGL TGVPDV C GN+ MGPD+V+F   LY
Sbjct:   28 MIQKGAKHSDKAVGLVEGAQEVRDLCRAAGLHHKDVKHAFKSVVGGGVAAFASHRHSSHEEKEQMLAMMSGPGSNVLRVRGFSILPFKEHVKRVSRRHDNPDSRIEAMEAVVTSVKGAYYPHKINVAAWDVGLGMEEPELYDMVESGTAKNPDGLAYRYAVFRGQGVIKWKGGLQTGVPDVCCTGNLNMGPDSVWFSQILY 228
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BLAST of mRNA_H-canaliculatus_F_contig11285.1155.1 vs. uniprot
Match: A0A6H5KHJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ4_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 1.530e-52
Identity = 104/205 (50.73%), Postives = 130/205 (63.41%), Query Frame = 1 
Query:    1 MIAKDSKASRSVVEIVEGCQEVRDLCRAAGLEPKNVKNAVKSGFESLVGG----VAWRRH--HGEERRNEMVREGPATQTLRAHGFAIGPYD---KRVAYRRTTPEIRGETMETAMNAIKSAYYPHGMNVAMWDAALDMETAEFEWLVESGTAKTVKGLVHRYAVFWGQGYLKWEGGLPTGVPDVGCAGNVIMGPDTVYFGNALY 588
            +I K  K +   V +VEG QEVR+LCR AGL  KNVKNA    F+++VGG     A  RH  H EE+   M+  GP +  LR  GF+I P+    KRV+ R   P+ R E ME  + ++K AYYP+ +NVA WD  L ME  E   +VESGTAK   GL +RYAVF GQG +KW+GGL TGVPDV C GN+ MGPD+V+F   LY
Sbjct:    9 LIHKGDKHADKAVSLVEGAQEVRELCRTAGLNHKNVKNA----FKAVVGGGVLAFASHRHSTHEEEQILAMM-SGPGSNALRVRGFSILPFKEHVKRVSRRYDNPDSRIEAMEAVVTSVKGAYYPYQVNVAAWDVGLGMEEPECYDMVESGTAKNPDGLAYRYAVFRGQGVIKWKGGLQTGVPDVCCTGNLNMGPDSVWFNQILY 208
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11285.1155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8T1_ECTSI1.360e-5651.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHJ4_9PHAE1.530e-5250.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11285contigH-canaliculatus_F_contig11285:2230..4093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_011060.1
Exons3
Model size1218
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11285.1155.1prot_H-canaliculatus_F_contig11285.1155.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11285 2230..3472 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928809.0355659-CDS-H-canaliculatus_F_contig11285:2229..24301622928809.0355659-CDS-H-canaliculatus_F_contig11285:2229..2430Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11285 2230..2430 +
1696845573.2301328-CDS-H-canaliculatus_F_contig11285:2229..24301696845573.2301328-CDS-H-canaliculatus_F_contig11285:2229..2430Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11285 2230..2430 +
1622928809.0772471-CDS-H-canaliculatus_F_contig11285:2683..29811622928809.0772471-CDS-H-canaliculatus_F_contig11285:2683..2981Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11285 2684..2981 +
1696845573.2391582-CDS-H-canaliculatus_F_contig11285:2683..29811696845573.2391582-CDS-H-canaliculatus_F_contig11285:2683..2981Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11285 2684..2981 +
1622928809.0891304-CDS-H-canaliculatus_F_contig11285:3374..34721622928809.0891304-CDS-H-canaliculatus_F_contig11285:3374..3472Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11285 3375..3472 +
1696845573.2505774-CDS-H-canaliculatus_F_contig11285:3374..34721696845573.2505774-CDS-H-canaliculatus_F_contig11285:3374..3472Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11285 3375..3472 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928809.1116946-UTR-H-canaliculatus_F_contig11285:3472..40931622928809.1116946-UTR-H-canaliculatus_F_contig11285:3472..4093Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11285 3473..4093 +
1696845573.269661-UTR-H-canaliculatus_F_contig11285:3472..40931696845573.269661-UTR-H-canaliculatus_F_contig11285:3472..4093Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11285 3473..4093 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11285.1155.1

>prot_H-canaliculatus_F_contig11285.1155.1 ID=prot_H-canaliculatus_F_contig11285.1155.1|Name=mRNA_H-canaliculatus_F_contig11285.1155.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=199bp
MIAKDSKASRSVVEIVEGCQEVRDLCRAAGLEPKNVKNAVKSGFESLVGG
VAWRRHHGEERRNEMVREGPATQTLRAHGFAIGPYDKRVAYRRTTPEIRG
ETMETAMNAIKSAYYPHGMNVAMWDAALDMETAEFEWLVESGTAKTVKGL
VHRYAVFWGQGYLKWEGGLPTGVPDVGCAGNVIMGPDTVYFGNALYVH*
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mRNA from alignment at H-canaliculatus_F_contig11285:2230..4093+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11285.1155.1 ID=mRNA_H-canaliculatus_F_contig11285.1155.1|Name=mRNA_H-canaliculatus_F_contig11285.1155.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1864bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11285:2230..4093+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATCGCCAAAGACAGCAAAGCTTCCAGGAGTGTCGTGGAAATCGTTGA
AGGGTGTCAGGAAGTACGCGACCTTTGCAGGGCGGCCGGGTTGGAGCCGA
AGAATGTAAAAAACGCGGTCAAGTCCGGCTTCGAGTCTCTGGTCGGGGGA
GTCGCTTGGCGCCGTCACCATGGAGAGGAGCGTCGGAACGAGATGGTGCG
TGTCTAGTTGTTGTTCTGTTGTTGTTGTTGTTGTTGTTGGTCGAGGTCGT
CGTGGTCGTCTCTTTTTCGGTCTTGGCCTTGCATCACGACGCCAAGCACG
CTGCCGACAATCAATCCCTCATCCGCTCCGCCGGATGACAACCAACACTC
GAACACGTAAAAAACACGAGGTTCACCCATCTCATGTGCACTCGCTGTCG
CCGCTGTTTTTCTGCTCGATCGTCTCTGTCTGCCTTCCTACGAAACAACC
ACAGGAAGGACCAGCAACGCAGACCCTCAGGGCCCACGGTTTCGCGATCG
GACCCTACGACAAGCGTGTCGCCTACCGCCGTACCACCCCGGAAATTCGT
GGAGAAACAATGGAGACGGCGATGAACGCCATCAAGTCGGCCTACTACCC
TCACGGAATGAACGTCGCCATGTGGGATGCCGCTCTCGACATGGAGACGG
CTGAGTTCGAATGGTTGGTGGAGAGCGGTACCGCGAAGACGGTGAAGGGC
CTCGTGCACCGGTACGCCGTGTTCTGGGGGCAGGGCTACCTCAAGTGGGA
AGGTGAGACTCCGATGGGGTAGGCAGTAAATTTGCTCTTCTTACGATCCT
CACAAGGAATGGGCTTCCGCTCGTCGTTTCCCATACACACCATTTTTCCC
TCCGCTTCCTCCTCCTCTCACCTCATCAATCGCCTCATCCTCCTTCTTCG
CCTCCTGCTCCTCGTCCGCTTCCTCCTCCAAGAGGAAGCTCGATACAAAA
ACAAGAAGACTGGGGATAGGAAGAGCGTTCGCAGAAACGACCCATGCGGC
AGTATCAGCGCTCTCTCCATCACCTGAACAGCAATGTTGCCCCCCTCCCC
CCACGCAAGCCCGCTCACTGTTGTTTCTCTTCCGTCCCTCCACTCTTCTC
TCTCTCCCGCCCTCCTCCTACCCGGACCCCCTCCCGCACCATAAGGTGGA
CTTCCGACGGGTGTTCCAGACGTCGGCTGCGCAGGGAACGTGATCATGGG
GCCCGACACTGTCTATTTTGGCAACGCACTCTATGTTCACTGATGACAGC
CGCAGCCAGTACACTGCTGTTGATTCGTCTTGGCGTGCCTTGTTCGGTTT
TCTCCACGTCTCACGAACCATGGTGGGGAACAAGGTGGCTACTCAAGTGC
ATCTTTGGCAATGATCACAGACGCCGAAGTGTGGGCGGCGGGCGAAGCTT
AATGTGCAGTCCGATCTCCGGCAGAAAATAAGCAAGGCTTTCTTCGCTGA
TAAGGAGATTGGGCGGGGAAGAAACAAGAAATGACGGAATCGCATTTAGC
GCGAAGAGGAGGAAAGAGGAAATGAAATCTGAAAAGAAGAGGAGGATAAG
AATCTCTGGAAGTTAAATGAGGAGGGAAGGACGGCGGTTCCAAATTCGCC
ATGGATCCGACGTGGGTTTTTTGTCTGAATCACATGTTTTTAAAGAAAAC
ATAACAACACCGTTTTTTTGTATGTTGCGTATCCTCGATCCTACACGTCG
TGCTGGGGCAACAATACGCGGTGCTTTTCGTACTGGTTCTGTCTTTCACA
TCTCGAAAAAAGATTTGGAACTCGGCTTTTTTTGTAAAAAAATGTCGGGC
TAGACACGTAATAAAGCGTCACTAGGCTAGACTAAAACGGATGCGTAGAA
GATAGACACTTGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11285:2230..4093+

>mRNA_H-canaliculatus_F_contig11285.1155.1 ID=mRNA_H-canaliculatus_F_contig11285.1155.1|Name=mRNA_H-canaliculatus_F_contig11285.1155.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1194bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11285:2230..4093+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATCGCCAAAGACAGCAAAGCTTCCAGGAGTGTCGTGGAAATCGTTGA
AGGGTGTCAGGAAGTACGCGACCTTTGCAGGGCGGCCGGGTTGGAGCCGA
AGAATGTAAAAAACGCGGTCAAGTCCGGCTTCGAGTCTCTGGTCGGGGGA
GTCGCTTGGCGCCGTCACCATGGAGAGGAGCGTCGGAACGAGATGGTGCG
TATGATCGCCAAAGACAGCAAAGCTTCCAGGAGTGTCGTGGAAATCGTTG
AAGGGTGTCAGGAAGTACGCGACCTTTGCAGGGCGGCCGGGTTGGAGCCG
AAGAATGTAAAAAACGCGGTCAAGTCCGGCTTCGAGTCTCTGGTCGGGGG
AGTCGCTTGGCGCCGTCACCATGGAGAGGAGCGTCGGAACGAGATGGTGC
GTGAAGGACCAGCAACGCAGACCCTCAGGGCCCACGGTTTCGCGATCGGA
CCCTACGACAAGCGTGTCGCCTACCGCCGTACCACCCCGGAAATTCGTGG
AGAAACAATGGAGACGGCGATGAACGCCATCAAGTCGGCCTACTACCCTC
ACGGAATGAACGTCGCCATGTGGGATGCCGCTCTCGACATGGAGACGGCT
GAGTTCGAATGGTTGGTGGAGAGCGGTACCGCGAAGACGGTGAAGGGCCT
CGTGCACCGGTACGCCGTGTTCTGGGGGCAGGGCTACCTCAAGTGGGAAG
GAAGGACCAGCAACGCAGACCCTCAGGGCCCACGGTTTCGCGATCGGACC
CTACGACAAGCGTGTCGCCTACCGCCGTACCACCCCGGAAATTCGTGGAG
AAACAATGGAGACGGCGATGAACGCCATCAAGTCGGCCTACTACCCTCAC
GGAATGAACGTCGCCATGTGGGATGCCGCTCTCGACATGGAGACGGCTGA
GTTCGAATGGTTGGTGGAGAGCGGTACCGCGAAGACGGTGAAGGGCCTCG
TGCACCGGTACGCCGTGTTCTGGGGGCAGGGCTACCTCAAGTGGGAAGGT
GGACTTCCGACGGGTGTTCCAGACGTCGGCTGCGCAGGGAACGTGATCAT
GGGGCCCGACACTGTCTATTTTGGCAACGCACTCTATGTTCACTGAGTGG
ACTTCCGACGGGTGTTCCAGACGTCGGCTGCGCAGGGAACGTGATCATGG
GGCCCGACACTGTCTATTTTGGCAACGCACTCTATGTTCACTGA
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