mRNA_H-canaliculatus_F_contig11284.1154.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11284.1154.1
Unique NamemRNA_H-canaliculatus_F_contig11284.1154.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11284.1154.1 vs. uniprot
Match: A0A6H5KT07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 268 bits (685), Expect = 1.520e-79
Identity = 139/184 (75.54%), Postives = 153/184 (83.15%), Query Frame = 1 
Query:    7 PAVAGEGFRTGKWLWEWHVVSCGSHVGFGVCGRDVAAVSAAGVPVQ-TPGGGAGDRADLWLYRADGNLLHGGESTERACPGGGFDSGDVVGVELDADAGTLAFLKNNSYVGGQFKIVRRSDAGKGDDGGXXXXXSDDGLYPCTSLRGSGDVAVLLGLKDGAATITFRSPPSEKKSGGSGRSSPS 555
            P+VAGEG++TGKWLWEWHV+SCG+ V  GVC RDVAA+SAAGVP+Q   GGGAG RADLWLYR+DGNL HGGESTER CPGGGFDSGDVVGVELDADAGTLAFLKN++YVGGQFKI RRS+     DG         GLYPC SLR +GD AVLLGLK GAATIT+RSPPSEKKSGG  R+SPS
Sbjct: 6552 PSVAGEGYQTGKWLWEWHVMSCGNRVSVGVCRRDVAAISAAGVPLQGAGGGGAGGRADLWLYRSDGNLSHGGESTERMCPGGGFDSGDVVGVELDADAGTLAFLKNDAYVGGQFKIDRRSEGDHSGDGEGGR-----GLYPCVSLRVNGDAAVLLGLKQGAATITYRSPPSEKKSGG--RNSPS 6728
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BLAST of mRNA_H-canaliculatus_F_contig11284.1154.1 vs. uniprot
Match: D8LCZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 8.680e-69
Identity = 119/157 (75.80%), Postives = 131/157 (83.44%), Query Frame = 1 
Query:    7 PAVAGEGFRTGKWLWEWHVVSCGSHVGFGVCGRDVAAVSAAGVPVQ-TPGGGAGDRADLWLYRADGNLLHGGESTERACPGGGFDSGDVVGVELDADAGTLAFLKNNSYVGGQFKIVRRSDAGKGDDGGXXXXXSDDGLYPCTSLRGSGDVAVLLGL 474
            P+VAGEG++TGKWLWEWH+VSCG+    GVC RDVAA+SAAGVP+Q   GGGAGDRADLWLYR+DGNL HGGESTER CPGGGFDSGDVVGVELDADAGTLAFLKN++YVGGQFKI RRS+   GDD G        GL+PC SLR SGD AVLLGL
Sbjct: 6035 PSVAGEGYQTGKWLWEWHIVSCGNRASVGVCRRDVAAISAAGVPLQGAGGGGAGDRADLWLYRSDGNLSHGGESTERMCPGGGFDSGDVVGVELDADAGTLAFLKNDAYVGGQFKIDRRSE---GDDSGDGEGGR--GLFPCVSLRASGDAAVLLGL 6186
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BLAST of mRNA_H-canaliculatus_F_contig11284.1154.1 vs. uniprot
Match: A0A812VSI3_9DINO (HERC1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812VSI3_9DINO)

HSP 1 Score: 60.5 bits (145), Expect = 3.090e-7
Identity = 45/156 (28.85%), Postives = 67/156 (42.95%), Query Frame = 1 
Query:   34 TGKWLWEWHVVSCGSHVGFGVCGRDVAAVSAAGVPVQTPGGGAGDRADLWLYRADGNLLHGGESTERACPGGGFDSGDVVGVELDADAGTLAFLKNNSYVGGQFKIVRRSDAGKGDDGGXXXXXSDDGLYPCTSLRGSGDVAVLLGLKDGAATITF 501
            +GKW+WE  V+S   HV  G+  R     +  G   Q+           W ++++    H G S     P   F  GDV+GVE+D D GT+ +L N + +G  +  +R   A   +           G+ P  +    GD   LLGLK G    T+
Sbjct:    7 SGKWMWEAKVLSVQGHVVVGMATRGAVVRNHLGCERQS-----------WGFKSNRECFHKGSSKPYGKP---FSGGDVIGVEVDMDNGTIEWLVNGTGLGIAYTDLR---AQAMEHSSVCHIPDGKGVVPGLTTYAQGDAVKLLGLKSGHGVRTW 145
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BLAST of mRNA_H-canaliculatus_F_contig11284.1154.1 vs. uniprot
Match: A0A3E0N2T2_9PROT (B30.2/SPRY domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A3E0N2T2_9PROT)

HSP 1 Score: 56.6 bits (135), Expect = 6.240e-6
Identity = 45/113 (39.82%), Postives = 57/113 (50.44%), Query Frame = 1 
Query:   10 AVAGE-GFRTGKWLWEWHVVSCGSHVGFGVCGRDVAAVSAAGVPVQTPGGGAGDRADLWLYRADGNLLHGGESTERACPGGGFDSGDVVGVELDADAGTLAFLKNNSYVGGQF 345
            AV G  G  +GK+ WE    + GS+       +DV  + +AG  V    G  G  AD + Y ADGN L+    T     G  + SGDV+GV LD DAGTL F KN +  G  F
Sbjct:  505 AVTGTIGVSSGKYYWE---ATAGSN-------KDVIGIWSAGSHVT---GYPGKTADSYGYFADGNKLNSETGTSY---GATYASGDVIGVALDLDAGTLVFYKNGASQGTAF 601
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BLAST of mRNA_H-canaliculatus_F_contig11284.1154.1 vs. uniprot
Match: UPI0007122A2F (putative HECT E3 ubiquitin n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007122A2F)

HSP 1 Score: 56.2 bits (134), Expect = 8.630e-6
Identity = 34/109 (31.19%), Postives = 49/109 (44.95%), Query Frame = 1 
Query:  181 WLYRADGNLLHGGESTERACPGGGFDSGDVVGVELDADAGTLAFLKNNSYVGGQFKIVRRSDAGKGDDGGXXXXXSDDGLYPCTSLRGSGDVAVLLGLKDGAATITFRS 507
            W ++  G   H         P   +  GDV+ VELD D GTLAF KNN Y+G  F  +   +              ++G +P  +   SGD   +LGL++G  T  + S
Sbjct:  360 WSFQPTGEKWHSNIGYNYGPPRPSYCEGDVISVELDLDQGTLAFYKNNQYLGIAFSDLLVENPSV-----------ENGFFPAVTSYRSGDSIEVLGLREGLITDEYPS 457
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BLAST of mRNA_H-canaliculatus_F_contig11284.1154.1 vs. uniprot
Match: A0A2E7TNJ0_9ACTN (B30.2/SPRY domain-containing protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2E7TNJ0_9ACTN)

HSP 1 Score: 53.1 bits (126), Expect = 9.200e-5
Identity = 34/106 (32.08%), Postives = 50/106 (47.17%), Query Frame = 1 
Query:   25 GFRTGKWLWEWHVVSCGSHVGF--GVCGRDVAAVSAAGVPVQTPGGGAGDRADLWLYRADGNLLHGGESTERACPGGGFDSGDVVGVELDADAGTLAFLKNNSYVG 336
            G  +GKW WE ++++ G+      G+C  +    S+   P+        D    + Y ADG     G +      G  + +GD+VGV LD DAGTL F KN +  G
Sbjct:  782 GLSSGKWYWEIYMITIGAAANCRTGICKTNTYGTSSGTGPI--------DMGVAYTYDADGQKTVPGST---GAYGATYAAGDIVGVALDMDAGTLTFYKNGATQG 876
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11284.1154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KT07_9PHAE1.520e-7975.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCZ5_ECTSI8.680e-6975.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A812VSI3_9DINO3.090e-728.85HERC1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A3E0N2T2_9PROT6.240e-639.82B30.2/SPRY domain-containing protein n=1 Tax=Prote... [more]
UPI0007122A2F8.630e-631.19putative HECT E3 ubiquitin n=1 Tax=Blastocystis sp... [more]
A0A2E7TNJ0_9ACTN9.200e-532.08B30.2/SPRY domain-containing protein (Fragment) n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11284contigH-canaliculatus_F_contig11284:2345..2942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score238.0
Seed ortholog evalue3.7e-60
Seed eggNOG ortholog2880.D8LCZ5
KEGG koko:K10614
KEGG Pathwayko04120,map04120
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
EC2.3.2.26
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size600
Cds size597
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928808.9266446-CDS-H-canaliculatus_F_contig11284:2344..29411622928808.9266446-CDS-H-canaliculatus_F_contig11284:2344..2941Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11284 2345..2941 +
1696845573.219512-CDS-H-canaliculatus_F_contig11284:2344..29411696845573.219512-CDS-H-canaliculatus_F_contig11284:2344..2941Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11284 2345..2941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11284.1154.1prot_H-canaliculatus_F_contig11284.1154.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11284 2345..2941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11284.1154.1

>prot_H-canaliculatus_F_contig11284.1154.1 ID=prot_H-canaliculatus_F_contig11284.1154.1|Name=mRNA_H-canaliculatus_F_contig11284.1154.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=199bp
GTPAVAGEGFRTGKWLWEWHVVSCGSHVGFGVCGRDVAAVSAAGVPVQTP
GGGAGDRADLWLYRADGNLLHGGESTERACPGGGFDSGDVVGVELDADAG
TLAFLKNNSYVGGQFKIVRRSDAGKGDDGGAGGGGSDDGLYPCTSLRGSG
DVAVLLGLKDGAATITFRSPPSEKKSGGSGRSSPSPPSSSPTPPAGDAS
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mRNA from alignment at H-canaliculatus_F_contig11284:2345..2942+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11284.1154.1 ID=mRNA_H-canaliculatus_F_contig11284.1154.1|Name=mRNA_H-canaliculatus_F_contig11284.1154.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=598bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11284:2345..2942+ (Hapterophycus canaliculatus Oshoro5f female)
GGCACACCTGCGGTGGCAGGAGAGGGCTTCCGGACGGGCAAGTGGCTGTG
GGAGTGGCACGTGGTGTCCTGCGGCAGCCACGTCGGCTTCGGCGTGTGCG
GTCGCGACGTCGCGGCCGTGAGCGCCGCCGGGGTGCCGGTGCAGACGCCC
GGTGGCGGCGCCGGCGACCGCGCGGACCTATGGCTGTACCGCGCGGACGG
GAACCTGCTGCACGGCGGAGAGTCGACCGAGCGGGCGTGCCCGGGCGGTG
GCTTCGACAGCGGAGACGTGGTCGGAGTGGAGCTGGACGCGGATGCCGGG
ACCCTGGCCTTCCTGAAGAACAATTCGTACGTGGGGGGCCAGTTCAAGAT
AGTGCGCCGGTCGGACGCGGGGAAGGGAGACGACGGCGGCGCGGGCGGCG
GAGGCAGCGACGACGGTCTGTACCCGTGCACGTCACTCCGCGGGAGCGGG
GACGTGGCCGTGTTGTTGGGGCTGAAGGATGGGGCGGCCACGATCACCTT
CCGCTCCCCTCCGTCGGAGAAGAAAAGCGGAGGGAGTGGCCGTAGCTCTC
CATCTCCGCCGTCGTCGTCGCCAACGCCCCCGGCCGGAGACGCTAGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11284:2345..2942+

>mRNA_H-canaliculatus_F_contig11284.1154.1 ID=mRNA_H-canaliculatus_F_contig11284.1154.1|Name=mRNA_H-canaliculatus_F_contig11284.1154.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1194bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11284:2345..2942+ (Hapterophycus canaliculatus Oshoro5f female)
GGCACACCTGCGGTGGCAGGAGAGGGCTTCCGGACGGGCAAGTGGCTGTG
GGAGTGGCACGTGGTGTCCTGCGGCAGCCACGTCGGCTTCGGCGTGTGCG
GTCGCGACGTCGCGGCCGTGAGCGCCGCCGGGGTGCCGGTGCAGACGCCC
GGTGGCGGCGCCGGCGACCGCGCGGACCTATGGCTGTACCGCGCGGACGG
GAACCTGCTGCACGGCGGAGAGTCGACCGAGCGGGCGTGCCCGGGCGGTG
GCTTCGACAGCGGAGACGTGGTCGGAGTGGAGCTGGACGCGGATGCCGGG
ACCCTGGCCTTCCTGAAGAACAATTCGTACGTGGGGGGCCAGTTCAAGAT
AGTGCGCCGGTCGGACGCGGGGAAGGGAGACGACGGCGGCGCGGGCGGCG
GAGGCAGCGACGACGGTCTGTACCCGTGCACGTCACTCCGCGGGAGCGGG
GACGTGGCCGTGTTGTTGGGGCTGAAGGATGGGGCGGCCACGATCACCTT
CCGCTCCCCTCCGTCGGAGAAGAAAAGCGGAGGGAGTGGCCGTAGCTCTC
CATCTCCGCCGTCGTCGTCGCCAACGCCCCCGGCCGGAGACGCTAGCGGC
ACACCTGCGGTGGCAGGAGAGGGCTTCCGGACGGGCAAGTGGCTGTGGGA
GTGGCACGTGGTGTCCTGCGGCAGCCACGTCGGCTTCGGCGTGTGCGGTC
GCGACGTCGCGGCCGTGAGCGCCGCCGGGGTGCCGGTGCAGACGCCCGGT
GGCGGCGCCGGCGACCGCGCGGACCTATGGCTGTACCGCGCGGACGGGAA
CCTGCTGCACGGCGGAGAGTCGACCGAGCGGGCGTGCCCGGGCGGTGGCT
TCGACAGCGGAGACGTGGTCGGAGTGGAGCTGGACGCGGATGCCGGGACC
CTGGCCTTCCTGAAGAACAATTCGTACGTGGGGGGCCAGTTCAAGATAGT
GCGCCGGTCGGACGCGGGGAAGGGAGACGACGGCGGCGCGGGCGGCGGAG
GCAGCGACGACGGTCTGTACCCGTGCACGTCACTCCGCGGGAGCGGGGAC
GTGGCCGTGTTGTTGGGGCTGAAGGATGGGGCGGCCACGATCACCTTCCG
CTCCCCTCCGTCGGAGAAGAAAAGCGGAGGGAGTGGCCGTAGCTCTCCAT
CTCCGCCGTCGTCGTCGCCAACGCCCCCGGCCGGAGACGCTAGC
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